RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	FBXO46	Q6PJ61	603 aa	Predicted RBP	11.47	□□□□□ -0.57
YBX3-215	ENST00000544504	TBC1D9	Q6ZT07	1266 aa		11.47	□□□□□ -0.57
YBX3-215	ENST00000544504	PODN	Q7Z5L7	613 aa		11.47	□□□□□ -0.57
YBX3-215	ENST00000544504	TBC1D22A	Q8WUA7	517 aa		11.47	□□□□□ -0.57
YBX3-215	ENST00000544504	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.47	□□□□□ -0.57
YBX3-215	ENST00000544504	CD209	Q9NNX6	404 aa		11.47	□□□□□ -0.57
YBX3-215	ENST00000544504	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.47	□□□□□ -0.57
YBX3-215	ENST00000544504	SALL1	Q9NSC2	1324 aa		11.46	□□□□□ -0.57
YBX3-215	ENST00000544504		A0A0C4DFX4	3053 aa		11.46	□□□□□ -0.57
YBX3-215	ENST00000544504	EPB41L2	O43491	1005 aa	Known RBP	11.46	□□□□□ -0.57
YBX3-215	ENST00000544504	MAP4K4	O95819	1239 aa	Predicted RBP	11.46	□□□□□ -0.57
YBX3-215	ENST00000544504	RPS12	P25398	132 aa	Known RBP	11.46	□□□□□ -0.57
YBX3-215	ENST00000544504	CHML	P26374	656 aa		11.46	□□□□□ -0.57
YBX3-215	ENST00000544504	MFAP1	P55081	439 aa	Known RBP	11.46	□□□□□ -0.57
YBX3-215	ENST00000544504	SCARF1	Q14162	830 aa		11.46	□□□□□ -0.57
YBX3-215	ENST00000544504	SULF1	Q8IWU6	871 aa		11.46	□□□□□ -0.57
YBX3-215	ENST00000544504	SNRK	Q9NRH2	765 aa		11.46	□□□□□ -0.57
YBX3-215	ENST00000544504	AKAP11	Q9UKA4	1901 aa		11.45	□□□□□ -0.58
YBX3-215	ENST00000544504	MYH13	Q9UKX3	1938 aa		11.45	□□□□□ -0.58
YBX3-215	ENST00000544504	FAM205A	Q6ZU69	1335 aa		11.45	□□□□□ -0.58
YBX3-215	ENST00000544504	RIMBP2	O15034	1052 aa		11.45	□□□□□ -0.58
YBX3-215	ENST00000544504	EGFR	P00533	1210 aa		11.45	□□□□□ -0.58
YBX3-215	ENST00000544504	CYP2E1	P05181	493 aa	Predicted RBP	11.45	□□□□□ -0.58
YBX3-215	ENST00000544504	KLRK1	P26718	216 aa		11.45	□□□□□ -0.58
YBX3-215	ENST00000544504	FKBP1B	P68106	108 aa		11.45	□□□□□ -0.58
YBX3-215	ENST00000544504	NOM1	Q5C9Z4	860 aa	Known RBP	11.45	□□□□□ -0.58
YBX3-215	ENST00000544504	TXNRD3	Q86VQ6	643 aa		11.45	□□□□□ -0.58
YBX3-215	ENST00000544504	RASAL3	Q86YV0	1011 aa		11.45	□□□□□ -0.58
YBX3-215	ENST00000544504	LRP2BP	Q9P2M1	347 aa		11.45	□□□□□ -0.58
YBX3-215	ENST00000544504	SUGT1	Q9Y2Z0	365 aa		11.45	□□□□□ -0.58
YBX3-215	ENST00000544504	WTIP	A6NIX2	430 aa	Predicted RBP	11.44	□□□□□ -0.58
YBX3-215	ENST00000544504	PSMD14	O00487	310 aa		11.44	□□□□□ -0.58
YBX3-215	ENST00000544504	RNF113A	O15541	343 aa	Known RBP	11.44	□□□□□ -0.58
YBX3-215	ENST00000544504	IDH1	O75874	414 aa	Known RBP	11.44	□□□□□ -0.58
YBX3-215	ENST00000544504	FXR1	P51114	621 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
YBX3-215	ENST00000544504	UBE3C	Q15386	1083 aa		11.44	□□□□□ -0.58
YBX3-215	ENST00000544504	KIAA1211	Q6ZU35	1233 aa		11.44	□□□□□ -0.58
YBX3-215	ENST00000544504	ERICH6	Q7L0X2	663 aa		11.44	□□□□□ -0.58
YBX3-215	ENST00000544504	SLF2	Q8IX21	1173 aa		11.44	□□□□□ -0.58
YBX3-215	ENST00000544504	CDCA5	Q96FF9	252 aa		11.44	□□□□□ -0.58
YBX3-215	ENST00000544504	ESYT1	Q9BSJ8	1104 aa		11.44	□□□□□ -0.58
YBX3-215	ENST00000544504	HELLS	Q9NRZ9	838 aa		11.44	□□□□□ -0.58
YBX3-215	ENST00000544504	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	11.44	□□□□□ -0.58
YBX3-215	ENST00000544504	TBC1D8	O95759	1140 aa		11.43	□□□□□ -0.58
YBX3-215	ENST00000544504	FKBP1A	P62942	108 aa	Known RBP	11.43	□□□□□ -0.58
YBX3-215	ENST00000544504	GSTO1	P78417	241 aa		11.43	□□□□□ -0.58
YBX3-215	ENST00000544504	CHAF1A	Q13111	956 aa	Predicted RBP	11.43	□□□□□ -0.58
YBX3-215	ENST00000544504	RBM26	Q5T8P6	1007 aa	Known RBP	11.43	□□□□□ -0.58
YBX3-215	ENST00000544504	PI16	Q6UXB8	463 aa		11.43	□□□□□ -0.58
YBX3-215	ENST00000544504	CERS3	Q8IU89	383 aa		11.43	□□□□□ -0.58
YBX3-215	ENST00000544504	APPBP2	Q92624	585 aa		11.43	□□□□□ -0.58
YBX3-215	ENST00000544504	EDC3	Q96F86	508 aa	Known RBP	11.43	□□□□□ -0.58
YBX3-215	ENST00000544504	GGA3	Q9NZ52	723 aa		11.43	□□□□□ -0.58
YBX3-215	ENST00000544504	ABCF2	Q9UG63	623 aa		11.43	□□□□□ -0.58
YBX3-215	ENST00000544504	MAST3	O60307	1309 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	GPR25	O00155	361 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	SGSM2	O43147	1006 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	ECE2	O60344	883 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	LDHB	P07195	334 aa	Known RBP	11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	LDHC	P07864	332 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	ADD2	P35612	726 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	KIF4B	Q2VIQ3	1234 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	MCMDC2	Q4G0Z9	681 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	ZMYM1	Q5SVZ6	1142 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	SLC9C2	Q5TAH2	1124 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	STRIP1	Q5VSL9	837 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	CWC27	Q6UX04	472 aa	Known RBP	11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	ANTXR1	Q9H6X2	564 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	PIH1D3	Q9NQM4	214 aa	Known RBP	11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	RAI14	Q9P0K7	980 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	NDUFB9	Q9Y6M9	179 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	DOCK2	Q92608	1830 aa		11.42	□□□□□ -0.58
YBX3-215	ENST00000544504	MYO3B	Q8WXR4	1341 aa		11.41	□□□□□ -0.58
YBX3-215	ENST00000544504	MYH7	P12883	1935 aa		11.41	□□□□□ -0.58
YBX3-215	ENST00000544504	USP17L3	A6NCW0	530 aa		11.41	□□□□□ -0.58
YBX3-215	ENST00000544504	USP17L4	A6NCW7	530 aa		11.41	□□□□□ -0.58
YBX3-215	ENST00000544504	PDE6A	P16499	860 aa		11.41	□□□□□ -0.58
YBX3-215	ENST00000544504	MCC	P23508	829 aa		11.41	□□□□□ -0.58
YBX3-215	ENST00000544504	TM4SF4	P48230	202 aa		11.41	□□□□□ -0.58
YBX3-215	ENST00000544504	NMI	Q13287	307 aa	Predicted RBP	11.41	□□□□□ -0.58
YBX3-215	ENST00000544504	TTLL5	Q6EMB2	1281 aa		11.41	□□□□□ -0.58
YBX3-215	ENST00000544504	NAA16	Q6N069	864 aa	Predicted RBP	11.41	□□□□□ -0.58
YBX3-215	ENST00000544504	USP17L1	Q7RTZ2	530 aa		11.41	□□□□□ -0.58
YBX3-215	ENST00000544504	DZIP1	Q86YF9	867 aa	Known RBP	11.41	□□□□□ -0.58
YBX3-215	ENST00000544504	DBNDD1	Q9H9R9	158 aa		11.41	□□□□□ -0.58
YBX3-215	ENST00000544504	COL1A1	P02452	1464 aa	Predicted RBP	11.4	□□□□□ -0.58
YBX3-215	ENST00000544504	MMP14	P50281	582 aa		11.4	□□□□□ -0.58
YBX3-215	ENST00000544504	GTF2I	P78347	998 aa		11.4	□□□□□ -0.58
YBX3-215	ENST00000544504	DOK7	Q18PE1	504 aa		11.4	□□□□□ -0.58
YBX3-215	ENST00000544504	MFSD14B	Q5SR56	506 aa		11.4	□□□□□ -0.58
YBX3-215	ENST00000544504	NOL10	Q9BSC4	688 aa	Known RBP	11.4	□□□□□ -0.58
YBX3-215	ENST00000544504	CFHR5	Q9BXR6	569 aa		11.4	□□□□□ -0.58
YBX3-215	ENST00000544504	ANO2	Q9NQ90	1003 aa		11.4	□□□□□ -0.58
YBX3-215	ENST00000544504	CCDC171	Q6TFL3	1326 aa		11.39	□□□□□ -0.59
YBX3-215	ENST00000544504	ZNF532	Q9HCE3	1301 aa		11.39	□□□□□ -0.59
YBX3-215	ENST00000544504	MAST2	Q6P0Q8	1798 aa		11.39	□□□□□ -0.59
YBX3-215	ENST00000544504	FKTN	O75072	461 aa		11.39	□□□□□ -0.59
YBX3-215	ENST00000544504	GNAT2	P19087	354 aa		11.39	□□□□□ -0.59
YBX3-215	ENST00000544504	CYP7A1	P22680	504 aa		11.39	□□□□□ -0.59
YBX3-215	ENST00000544504	RANBP2	P49792	3224 aa	Known RBP	11.39	□□□□□ -0.59

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