RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	SLFNL1	Q499Z3	407 aa		14.26	□□□□□ -0.13
DDB1-223	ENST00000543658	OSBP2	Q969R2	916 aa		14.26	□□□□□ -0.13
DDB1-223	ENST00000543658	FAM163A	Q96GL9	167 aa	Predicted RBP	14.26	□□□□□ -0.13
DDB1-223	ENST00000543658	CRNKL1	Q9BZJ0	848 aa	Known RBP	14.26	□□□□□ -0.13
DDB1-223	ENST00000543658	PUS7L	Q9H0K6	701 aa	Known RBP	14.26	□□□□□ -0.13
DDB1-223	ENST00000543658	UPF2	Q9HAU5	1272 aa	Known RBP	14.26	□□□□□ -0.13
DDB1-223	ENST00000543658	MYOZ2	Q9NPC6	264 aa		14.26	□□□□□ -0.13
DDB1-223	ENST00000543658	CNOT7	Q9UIV1	285 aa	Known RBP	14.26	□□□□□ -0.13
DDB1-223	ENST00000543658	MYH8	P13535	1937 aa		14.25	□□□□□ -0.13
DDB1-223	ENST00000543658	LAMA4	Q16363	1823 aa		14.25	□□□□□ -0.13
DDB1-223	ENST00000543658	SGSM2	O43147	1006 aa		14.25	□□□□□ -0.13
DDB1-223	ENST00000543658	CHGB	P05060	677 aa		14.25	□□□□□ -0.13
DDB1-223	ENST00000543658	C8orf34	Q49A92	452 aa		14.25	□□□□□ -0.13
DDB1-223	ENST00000543658	CCDC129	Q6ZRS4	1044 aa		14.25	□□□□□ -0.13
DDB1-223	ENST00000543658	ADGRA1	Q86SQ6	560 aa		14.25	□□□□□ -0.13
DDB1-223	ENST00000543658	ZNF384	Q8TF68	577 aa		14.25	□□□□□ -0.13
DDB1-223	ENST00000543658	ZDHHC15	Q96MV8	337 aa		14.25	□□□□□ -0.13
DDB1-223	ENST00000543658	SEC62	Q99442	399 aa	Known RBP	14.25	□□□□□ -0.13
DDB1-223	ENST00000543658	ARMT1	Q9H993	441 aa		14.25	□□□□□ -0.13
DDB1-223	ENST00000543658	ANO2	Q9NQ90	1003 aa		14.25	□□□□□ -0.13
DDB1-223	ENST00000543658	GPRC5D	Q9NZD1	345 aa		14.25	□□□□□ -0.13
DDB1-223	ENST00000543658	GPR75-ASB3	A0A0A6YYF3	556 aa		14.24	□□□□□ -0.13
DDB1-223	ENST00000543658	IQCA1L	A6NCM1	817 aa		14.24	□□□□□ -0.13
DDB1-223	ENST00000543658	APP	P05067	770 aa		14.24	□□□□□ -0.13
DDB1-223	ENST00000543658	USP5	P45974	858 aa		14.24	□□□□□ -0.13
DDB1-223	ENST00000543658	DYNLL1	P63167	89 aa	Known RBP	14.24	□□□□□ -0.13
DDB1-223	ENST00000543658	KIF4B	Q2VIQ3	1234 aa		14.24	□□□□□ -0.13
DDB1-223	ENST00000543658	RBM26	Q5T8P6	1007 aa	Known RBP	14.24	□□□□□ -0.13
DDB1-223	ENST00000543658	TEX11	Q8IYF3	940 aa		14.24	□□□□□ -0.13
DDB1-223	ENST00000543658	LCORL	Q8N3X6	602 aa		14.24	□□□□□ -0.13
DDB1-223	ENST00000543658	NACAP1	Q9BZK3	213 aa		14.24	□□□□□ -0.13
DDB1-223	ENST00000543658	SLC4A4	Q9Y6R1	1079 aa		14.24	□□□□□ -0.13
DDB1-223	ENST00000543658	ZNF280A	P59817	542 aa	Predicted RBP	14.23	□□□□□ -0.13
DDB1-223	ENST00000543658	ZNF589	Q86UQ0	364 aa	Predicted RBP	14.23	□□□□□ -0.13
DDB1-223	ENST00000543658	AMOTL1	Q8IY63	956 aa		14.23	□□□□□ -0.13
DDB1-223	ENST00000543658	L3MBTL3	Q96JM7	780 aa	Predicted RBP	14.23	□□□□□ -0.13
DDB1-223	ENST00000543658	ADARB2	Q9NS39	739 aa	Known RBP	14.23	□□□□□ -0.13
DDB1-223	ENST00000543658	USP40	Q9NVE5	1235 aa		14.23	□□□□□ -0.13
DDB1-223	ENST00000543658	HACL1	Q9UJ83	578 aa		14.23	□□□□□ -0.13
DDB1-223	ENST00000543658	RPAP1	Q9BWH6	1393 aa	Predicted RBP	14.22	□□□□□ -0.13
DDB1-223	ENST00000543658	POLR2A	P24928	1970 aa	Known RBP	14.22	□□□□□ -0.13
DDB1-223	ENST00000543658	SPDYE2B	A6NHP3	402 aa		14.22	□□□□□ -0.13
DDB1-223	ENST00000543658	SPDYE6	P0CI01	402 aa		14.22	□□□□□ -0.13
DDB1-223	ENST00000543658	MCC	P23508	829 aa		14.22	□□□□□ -0.13
DDB1-223	ENST00000543658	TDO2	P48775	406 aa		14.22	□□□□□ -0.13
DDB1-223	ENST00000543658	PPP4C	P60510	307 aa		14.22	□□□□□ -0.13
DDB1-223	ENST00000543658	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	14.22	□□□□□ -0.13
DDB1-223	ENST00000543658	MTMR14	Q8NCE2	650 aa		14.22	□□□□□ -0.13
DDB1-223	ENST00000543658	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	14.22	□□□□□ -0.13
DDB1-223	ENST00000543658	STRBP	Q96SI9	672 aa	Known RBP	14.22	□□□□□ -0.13
DDB1-223	ENST00000543658	RIOK1	Q9BRS2	568 aa	Known RBP	14.22	□□□□□ -0.13
DDB1-223	ENST00000543658	DDX60L	Q5H9U9	1706 aa	Known RBP	14.21	□□□□□ -0.13
DDB1-223	ENST00000543658	SHTN1	A0MZ66	631 aa		14.21	□□□□□ -0.13
DDB1-223	ENST00000543658	EPS15	P42566	896 aa		14.21	□□□□□ -0.13
DDB1-223	ENST00000543658	CDC42EP5	Q6NZY7	148 aa		14.21	□□□□□ -0.13
DDB1-223	ENST00000543658	SAMD7	Q7Z3H4	446 aa		14.21	□□□□□ -0.13
DDB1-223	ENST00000543658	DSCC1	Q9BVC3	393 aa		14.21	□□□□□ -0.13
DDB1-223	ENST00000543658	NAPB	Q9H115	298 aa		14.21	□□□□□ -0.13
DDB1-223	ENST00000543658	TDRD3	Q9H7E2	651 aa	Known RBP	14.21	□□□□□ -0.13
DDB1-223	ENST00000543658	VEZT	Q9HBM0	779 aa		14.21	□□□□□ -0.13
DDB1-223	ENST00000543658	PATL2	C9JE40	543 aa	Known RBP	14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	WNT10B	O00744	389 aa		14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	HSPD1	P10809	573 aa	Known RBP	14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	TNNI2	P48788	182 aa		14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	PICALM	Q13492	652 aa		14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	TNFAIP1	Q13829	316 aa		14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	APOBEC3H	Q6NTF7	200 aa	Known RBP	14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	TGFBRAP1	Q8WUH2	860 aa		14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	SDR42E1	Q8WUS8	393 aa		14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	PRMT6	Q96LA8	375 aa	Predicted RBP	14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	BACH2	Q9BYV9	841 aa		14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	IL25	Q9H293	177 aa		14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	ATP8A2	Q9NTI2	1148 aa		14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	CTNNA3	Q9UI47	895 aa		14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	PCDHAC2	Q9Y5I4	1007 aa		14.2	□□□□□ -0.14
DDB1-223	ENST00000543658	CLRN2	A0PK11	232 aa		14.19	□□□□□ -0.14
DDB1-223	ENST00000543658	EPB41L2	O43491	1005 aa	Known RBP	14.19	□□□□□ -0.14
DDB1-223	ENST00000543658	EPHX2	P34913	555 aa		14.19	□□□□□ -0.14
DDB1-223	ENST00000543658	RHBDL3	P58872	404 aa		14.19	□□□□□ -0.14
DDB1-223	ENST00000543658	MAPKAPK5	Q8IW41	473 aa		14.19	□□□□□ -0.14
DDB1-223	ENST00000543658	ZNF70	Q9UC06	446 aa	Predicted RBP	14.19	□□□□□ -0.14
DDB1-223	ENST00000543658		U3KPZ7	1027 aa	Predicted RBP	14.19	□□□□□ -0.14
DDB1-223	ENST00000543658	PRKAB2	O43741	272 aa		14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	NBPF9	Q3BBW0	867 aa		14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	SPDYE2	Q495Y8	402 aa		14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	EAPP	Q56P03	285 aa	Predicted RBP	14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	VPS53	Q5VIR6	699 aa		14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	RNF20	Q5VTR2	975 aa		14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	GIMAP6	Q6P9H5	292 aa		14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	USP50	Q70EL3	339 aa	Predicted RBP	14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	PNMA8A	Q86V59	439 aa	Predicted RBP	14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	APOBEC3F	Q8IUX4	373 aa	Known RBP	14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	IFNL3	Q8IZI9	196 aa		14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	TRPM4	Q8TD43	1214 aa		14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	ZNF526	Q8TF50	670 aa	Predicted RBP	14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	LSG1	Q9H089	658 aa	Known RBP	14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	MCM9	Q9NXL9	1143 aa		14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	ARPP21	Q9UBL0	812 aa	Predicted RBP	14.18	□□□□□ -0.14
DDB1-223	ENST00000543658	ZMYM6	O95789	1325 aa		14.17	□□□□□ -0.14

Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms