RNA–Protein interactions for RNA: ENST00000542817.1

NPIPB3-210, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 5 BASIC

Gene NPIPB3, Length 1,342 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-210ENST00000542817 H7C1D1 291 aa12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 ZFYP08048 801 aaPredicted RBP12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 EPHX2P34913 555 aa12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 GSTO1P78417 241 aa12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 NFIAQ12857 509 aa12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 SPDYE2Q495Y8 402 aa12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 RBM26Q5T8P6 1007 aaKnown RBP12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 CCDC129Q6ZRS4 1044 aa12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 ZNF589Q86UQ0 364 aaPredicted RBP12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 LCORLQ8N3X6 602 aa12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 OGFOD1Q8N543 542 aa12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 ZNF526Q8TF50 670 aaPredicted RBP12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 STRBPQ96SI9 672 aaKnown RBP12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 AATFQ9NY61 560 aaKnown RBP eCLIP12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 MKRN1Q9UHC7 482 aaKnown RBP12.89□□□□□ -0.35
NPIPB3-210ENST00000542817 KIF3CO14782 793 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 WDHD1O75717 1129 aaPredicted RBP12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 DLGAP5Q15398 846 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 SH3RF3Q8TEJ3 882 aaPredicted RBP12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 TDRD3Q9H7E2 651 aaKnown RBP12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 DDX4Q9NQI0 724 aaKnown RBP12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 ZNF70Q9UC06 446 aaPredicted RBP12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 FAM198AQ9UFP1 575 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 HDAC9Q9UKV0 1011 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 CNTNAP1P78357 1384 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 IQCA1LA6NCM1 817 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 PRKAB2O43741 272 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 MBD4O95243 580 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 LDHCP07864 332 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 VEGFAP15692 232 aaPredicted RBP12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 CACNB3P54284 484 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 VPS53Q5VIR6 699 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 ZSCAN25Q6NSZ9 544 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 CWC27Q6UX04 472 aaKnown RBP12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 USP50Q70EL3 339 aaPredicted RBP12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 ZFPM1Q8IX07 1006 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 ARMT1Q9H993 441 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 HELLSQ9NRZ9 838 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 USP40Q9NVE5 1235 aa12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 SCAF8Q9UPN6 1271 aaKnown RBP12.88□□□□□ -0.35
NPIPB3-210ENST00000542817 AK9Q5TCS8 1911 aa12.87□□□□□ -0.35
NPIPB3-210ENST00000542817 MAGEB6P1A0A0J9YX57 407 aa12.87□□□□□ -0.35
NPIPB3-210ENST00000542817 CLRN2A0PK11 232 aa12.87□□□□□ -0.35
NPIPB3-210ENST00000542817 SGSM2O43147 1006 aa12.87□□□□□ -0.35
NPIPB3-210ENST00000542817 GPAA1O43292 621 aa12.87□□□□□ -0.35
NPIPB3-210ENST00000542817 LMOD1P29536 600 aaPredicted RBP12.87□□□□□ -0.35
NPIPB3-210ENST00000542817 MCMDC2Q4G0Z9 681 aa12.87□□□□□ -0.35
NPIPB3-210ENST00000542817 DLK2Q6UY11 383 aa12.87□□□□□ -0.35
NPIPB3-210ENST00000542817 CDAN1Q8IWY9 1227 aa12.87□□□□□ -0.35
NPIPB3-210ENST00000542817 SLF2Q8IX21 1173 aa12.87□□□□□ -0.35
NPIPB3-210ENST00000542817 ZNF784Q8NCA9 323 aaPredicted RBP12.87□□□□□ -0.35
NPIPB3-210ENST00000542817 IDI2Q9BXS1 227 aa12.87□□□□□ -0.35
NPIPB3-210ENST00000542817 CDK5RAP2Q96SN8 1893 aa12.86□□□□□ -0.35
NPIPB3-210ENST00000542817 GSG1L2A8MUP6 293 aa12.86□□□□□ -0.35
NPIPB3-210ENST00000542817 YY1P25490 414 aa12.86□□□□□ -0.35
NPIPB3-210ENST00000542817 RBM5P52756 815 aaKnown RBP eCLIP12.86□□□□□ -0.35
NPIPB3-210ENST00000542817 EVX2Q03828 476 aa12.86□□□□□ -0.35
NPIPB3-210ENST00000542817 C8orf34Q49A92 452 aa12.86□□□□□ -0.35
NPIPB3-210ENST00000542817 ANGEL2Q5VTE6 544 aaKnown RBP12.86□□□□□ -0.35
NPIPB3-210ENST00000542817 SH3BP5LQ7L8J4 393 aa12.86□□□□□ -0.35
NPIPB3-210ENST00000542817 ESYT1Q9BSJ8 1104 aa12.86□□□□□ -0.35
NPIPB3-210ENST00000542817 SMIM22K7EJ46 135 aa12.85□□□□□ -0.35
NPIPB3-210ENST00000542817 HIP1O00291 1037 aa12.85□□□□□ -0.35
NPIPB3-210ENST00000542817 CDC45O75419 566 aa12.85□□□□□ -0.35
NPIPB3-210ENST00000542817 NPM3O75607 178 aaKnown RBP12.85□□□□□ -0.35
NPIPB3-210ENST00000542817 LRRFIP1Q32MZ4 808 aaKnown RBP12.85□□□□□ -0.35
NPIPB3-210ENST00000542817 ZC3H15Q8WU90 426 aaKnown RBP12.85□□□□□ -0.35
NPIPB3-210ENST00000542817 SDR42E1Q8WUS8 393 aa12.85□□□□□ -0.35
NPIPB3-210ENST00000542817 TEPSINQ96N21 525 aa12.85□□□□□ -0.35
NPIPB3-210ENST00000542817 EPB41L4AQ9HCS5 686 aaPredicted RBP12.85□□□□□ -0.35
NPIPB3-210ENST00000542817 DIAPH3Q9NSV4 1193 aa12.85□□□□□ -0.35
NPIPB3-210ENST00000542817 GGA3Q9NZ52 723 aa12.85□□□□□ -0.35
NPIPB3-210ENST00000542817 POLR2AP24928 1970 aaKnown RBP12.84□□□□□ -0.35
NPIPB3-210ENST00000542817 ECM29Q5VYK3 1845 aa12.84□□□□□ -0.35
NPIPB3-210ENST00000542817 RPAP1Q9BWH6 1393 aaPredicted RBP12.84□□□□□ -0.35
NPIPB3-210ENST00000542817 DDX60LQ5H9U9 1706 aaKnown RBP12.84□□□□□ -0.35
NPIPB3-210ENST00000542817 BAG3O95817 575 aa12.84□□□□□ -0.35
NPIPB3-210ENST00000542817 SLURP2P0DP57 97 aa12.84□□□□□ -0.35
NPIPB3-210ENST00000542817 PTH1RQ03431 593 aa12.84□□□□□ -0.35
NPIPB3-210ENST00000542817 FKBP1CQ5VVH2 108 aa12.84□□□□□ -0.35
NPIPB3-210ENST00000542817 PNMA8AQ86V59 439 aaPredicted RBP12.84□□□□□ -0.35
NPIPB3-210ENST00000542817 TEX11Q8IYF3 940 aa12.84□□□□□ -0.35
NPIPB3-210ENST00000542817 AIDAQ96BJ3 306 aa12.84□□□□□ -0.35
NPIPB3-210ENST00000542817 DCP1AQ9NPI6 582 aaPredicted RBP12.84□□□□□ -0.35
NPIPB3-210ENST00000542817 FLT1P17948 1338 aa12.83□□□□□ -0.35
NPIPB3-210ENST00000542817 CCDC171Q6TFL3 1326 aa12.83□□□□□ -0.35
NPIPB3-210ENST00000542817 PITPNM2Q9BZ72 1349 aa12.83□□□□□ -0.35
NPIPB3-210ENST00000542817 FOCADQ5VW36 1801 aa12.83□□□□□ -0.35
NPIPB3-210ENST00000542817 ATRNL1Q5VV63 1379 aa12.83□□□□□ -0.36
NPIPB3-210ENST00000542817 SEC24BO95487 1268 aa12.83□□□□□ -0.36
NPIPB3-210ENST00000542817 HSPD1P10809 573 aaKnown RBP12.83□□□□□ -0.36
NPIPB3-210ENST00000542817 MAPKAPK5Q8IW41 473 aa12.83□□□□□ -0.36
NPIPB3-210ENST00000542817 TGFBRAP1Q8WUH2 860 aa12.83□□□□□ -0.36
NPIPB3-210ENST00000542817 LSG1Q9H089 658 aaKnown RBP12.83□□□□□ -0.36
NPIPB3-210ENST00000542817 GPBP1L1Q9HC44 474 aaPredicted RBP12.83□□□□□ -0.36
NPIPB3-210ENST00000542817 RAD50Q92878 1312 aa12.82□□□□□ -0.36
NPIPB3-210ENST00000542817 SSC5DA1L4H1 1573 aa12.82□□□□□ -0.36
NPIPB3-210ENST00000542817 DDTLA6NHG4 134 aaPredicted RBP12.82□□□□□ -0.36
NPIPB3-210ENST00000542817 TCP10L2B9ZVM9 353 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms