RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TRIOBPQ9H2D6 2365 aa22.43■■□□□ 1.18
CLSTN3-214ENST00000542663 PHIPQ8WWQ0 1821 aa22.43■■□□□ 1.18
CLSTN3-214ENST00000542663 ADGRA2Q96PE1 1338 aa22.42■■□□□ 1.18
CLSTN3-214ENST00000542663 WDHD1O75717 1129 aaPredicted RBP22.42■■□□□ 1.18
CLSTN3-214ENST00000542663 GNRH1P01148 92 aa22.42■■□□□ 1.18
CLSTN3-214ENST00000542663 FGFR2P21802 821 aa22.42■■□□□ 1.18
CLSTN3-214ENST00000542663 INPP5BP32019 993 aa22.42■■□□□ 1.18
CLSTN3-214ENST00000542663 MIGA2Q7L4E1 593 aa22.42■■□□□ 1.18
CLSTN3-214ENST00000542663 SHISA4Q96DD7 197 aa22.42■■□□□ 1.18
CLSTN3-214ENST00000542663 HOOK2Q96ED9 719 aa22.42■■□□□ 1.18
CLSTN3-214ENST00000542663 SUGT1Q9Y2Z0 365 aa22.42■■□□□ 1.18
CLSTN3-214ENST00000542663 MAST3O60307 1309 aa22.41■■□□□ 1.18
CLSTN3-214ENST00000542663 KIF16BQ96L93 1317 aa22.41■■□□□ 1.18
CLSTN3-214ENST00000542663 H0YGN5 161 aa22.41■■□□□ 1.18
CLSTN3-214ENST00000542663 ECM2O94769 699 aaPredicted RBP22.41■■□□□ 1.18
CLSTN3-214ENST00000542663 PPATQ06203 517 aa22.41■■□□□ 1.18
CLSTN3-214ENST00000542663 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.41■■□□□ 1.18
CLSTN3-214ENST00000542663 ZNF341Q9BYN7 854 aa22.41■■□□□ 1.18
CLSTN3-214ENST00000542663 PRMT2P55345 433 aa22.4■■□□□ 1.18
CLSTN3-214ENST00000542663 MTFR1Q15390 333 aa22.4■■□□□ 1.18
CLSTN3-214ENST00000542663 DCAF15Q66K64 600 aa22.4■■□□□ 1.18
CLSTN3-214ENST00000542663 TRIM47Q96LD4 638 aa22.4■■□□□ 1.18
CLSTN3-214ENST00000542663 CPA4Q9UI42 421 aa22.4■■□□□ 1.18
CLSTN3-214ENST00000542663 MOGSQ13724 837 aa22.39■■□□□ 1.17
CLSTN3-214ENST00000542663 ANKRD23Q86SG2 305 aa22.39■■□□□ 1.17
CLSTN3-214ENST00000542663 KCNH4Q9UQ05 1017 aa22.39■■□□□ 1.17
CLSTN3-214ENST00000542663 PUM3Q15397 648 aaKnown RBP22.38■■□□□ 1.17
CLSTN3-214ENST00000542663 FAM151AQ8WW52 585 aa22.38■■□□□ 1.17
CLSTN3-214ENST00000542663 SRRDQ9UH36 339 aa22.38■■□□□ 1.17
CLSTN3-214ENST00000542663 ZNF112Q9UJU3 913 aa22.38■■□□□ 1.17
CLSTN3-214ENST00000542663 DOCK1Q14185 1865 aa22.38■■□□□ 1.17
CLSTN3-214ENST00000542663 RANBP2P49792 3224 aaKnown RBP22.38■■□□□ 1.17
CLSTN3-214ENST00000542663 PDHXO00330 501 aa22.37■■□□□ 1.17
CLSTN3-214ENST00000542663 PSMC4P43686 418 aa22.37■■□□□ 1.17
CLSTN3-214ENST00000542663 MRPL50Q8N5N7 158 aaKnown RBP22.37■■□□□ 1.17
CLSTN3-214ENST00000542663 DAGLAQ9Y4D2 1042 aa22.37■■□□□ 1.17
CLSTN3-214ENST00000542663 DOCK3Q8IZD9 2030 aa22.36■■□□□ 1.17
CLSTN3-214ENST00000542663 IFIT1P09914 478 aaKnown RBP22.36■■□□□ 1.17
CLSTN3-214ENST00000542663 OSBPP22059 807 aa22.36■■□□□ 1.17
CLSTN3-214ENST00000542663 CDC42EP5Q6NZY7 148 aa22.36■■□□□ 1.17
CLSTN3-214ENST00000542663 USP44Q9H0E7 712 aa22.36■■□□□ 1.17
CLSTN3-214ENST00000542663 ALPK3Q96L96 1907 aa22.35■■□□□ 1.17
CLSTN3-214ENST00000542663 RFX5P48382 616 aaPredicted RBP22.35■■□□□ 1.17
CLSTN3-214ENST00000542663 TCP10Q12799 353 aa22.35■■□□□ 1.17
CLSTN3-214ENST00000542663 NFIAQ12857 509 aa22.35■■□□□ 1.17
CLSTN3-214ENST00000542663 DIXDC1Q155Q3 683 aa22.35■■□□□ 1.17
CLSTN3-214ENST00000542663 ZNF521Q96K83 1311 aa22.34■■□□□ 1.17
CLSTN3-214ENST00000542663 NOL9Q5SY16 702 aaKnown RBP22.34■■□□□ 1.17
CLSTN3-214ENST00000542663 UBE2Q1Q7Z7E8 422 aa22.34■■□□□ 1.17
CLSTN3-214ENST00000542663 WDR66Q8TBY9 1149 aa22.34■■□□□ 1.17
CLSTN3-214ENST00000542663 FAM198AQ9UFP1 575 aa22.34■■□□□ 1.17
CLSTN3-214ENST00000542663 MYPNQ86TC9 1320 aa22.33■■□□□ 1.17
CLSTN3-214ENST00000542663 PRDX5P30044 214 aa22.33■■□□□ 1.17
CLSTN3-214ENST00000542663 GRK4P32298 578 aa22.33■■□□□ 1.17
CLSTN3-214ENST00000542663 CHRDL2Q6WN34 429 aa22.33■■□□□ 1.17
CLSTN3-214ENST00000542663 ATAD5Q96QE3 1844 aa22.33■■□□□ 1.16
CLSTN3-214ENST00000542663 PTPRCP08575 1304 aa22.32■■□□□ 1.16
CLSTN3-214ENST00000542663 EYA2O00167 538 aa22.32■■□□□ 1.16
CLSTN3-214ENST00000542663 FMNL1O95466 1100 aaPredicted RBP22.32■■□□□ 1.16
CLSTN3-214ENST00000542663 SLC5A1P13866 664 aa22.32■■□□□ 1.16
CLSTN3-214ENST00000542663 GPAT2Q6NUI2 795 aa22.32■■□□□ 1.16
CLSTN3-214ENST00000542663 ATG9AQ7Z3C6 839 aa22.32■■□□□ 1.16
CLSTN3-214ENST00000542663 RAET1EQ8TD07 263 aa22.32■■□□□ 1.16
CLSTN3-214ENST00000542663 LPIN2Q92539 896 aa22.32■■□□□ 1.16
CLSTN3-214ENST00000542663 ATRNL1Q5VV63 1379 aa22.32■■□□□ 1.16
CLSTN3-214ENST00000542663 BCRP11274 1271 aa22.31■■□□□ 1.16
CLSTN3-214ENST00000542663 CCL5P13501 91 aa22.31■■□□□ 1.16
CLSTN3-214ENST00000542663 HOXD10P28358 340 aa22.31■■□□□ 1.16
CLSTN3-214ENST00000542663 GJA8P48165 433 aa22.31■■□□□ 1.16
CLSTN3-214ENST00000542663 ZFPM1Q8IX07 1006 aa22.31■■□□□ 1.16
CLSTN3-214ENST00000542663 ANP32CO43423 234 aa22.3■■□□□ 1.16
CLSTN3-214ENST00000542663 GJB1P08034 283 aa22.3■■□□□ 1.16
CLSTN3-214ENST00000542663 CYP2C8P10632 490 aa22.3■■□□□ 1.16
CLSTN3-214ENST00000542663 FAM9BQ8IZU0 186 aa22.3■■□□□ 1.16
CLSTN3-214ENST00000542663 DPF3Q92784 378 aa22.3■■□□□ 1.16
CLSTN3-214ENST00000542663 RBM27Q9P2N5 1060 aaKnown RBP22.3■■□□□ 1.16
CLSTN3-214ENST00000542663 PRKCZQ05513 592 aa22.29■■□□□ 1.16
CLSTN3-214ENST00000542663 NKX2-3Q8TAU0 364 aa22.29■■□□□ 1.16
CLSTN3-214ENST00000542663 PHF20L1A8MW92 1017 aa22.28■■□□□ 1.16
CLSTN3-214ENST00000542663 ZEB1P37275 1124 aaPredicted RBP22.28■■□□□ 1.16
CLSTN3-214ENST00000542663 SSH1Q8WYL5 1049 aa22.28■■□□□ 1.16
CLSTN3-214ENST00000542663 PARK7Q99497 189 aaKnown RBP22.28■■□□□ 1.16
CLSTN3-214ENST00000542663 RNF208Q9H0X6 261 aa22.28■■□□□ 1.16
CLSTN3-214ENST00000542663 PRO3102Q9H379 93 aa22.28■■□□□ 1.16
CLSTN3-214ENST00000542663 USP40Q9NVE5 1235 aa22.28■■□□□ 1.16
CLSTN3-214ENST00000542663 GABRQQ9UN88 632 aa22.28■■□□□ 1.16
CLSTN3-214ENST00000542663 SALL1Q9NSC2 1324 aa22.28■■□□□ 1.16
CLSTN3-214ENST00000542663 RFX7Q2KHR2 1363 aa22.27■■□□□ 1.16
CLSTN3-214ENST00000542663 CXCL11O14625 94 aa22.27■■□□□ 1.16
CLSTN3-214ENST00000542663 LDHBP07195 334 aaKnown RBP22.27■■□□□ 1.16
CLSTN3-214ENST00000542663 LOC285556D6RIA3 1793 aa22.27■■□□□ 1.16
CLSTN3-214ENST00000542663 A0A0G2JLL6 359 aaPredicted RBP22.26■■□□□ 1.15
CLSTN3-214ENST00000542663 FCGRTP55899 365 aa22.26■■□□□ 1.15
CLSTN3-214ENST00000542663 PRRT2Q7Z6L0 340 aaPredicted RBP22.26■■□□□ 1.15
CLSTN3-214ENST00000542663 ATP2B3Q16720 1220 aa22.25■■□□□ 1.15
CLSTN3-214ENST00000542663 SH3BP5LQ7L8J4 393 aa22.25■■□□□ 1.15
CLSTN3-214ENST00000542663 SCYL3Q8IZE3 742 aa22.25■■□□□ 1.15
CLSTN3-214ENST00000542663 U2AF1L4Q8WU68 220 aaKnown RBP22.25■■□□□ 1.15
CLSTN3-214ENST00000542663 SIL1Q9H173 461 aa22.25■■□□□ 1.15
CLSTN3-214ENST00000542663 UNC93B1Q9H1C4 597 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms