RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 RTN4Q9NQC3 1192 aaKnown RBP17.07■□□□□ 0.32
CLIP1-216ENST00000541410 ZSWIM5Q9P217 1185 aa17.07■□□□□ 0.32
CLIP1-216ENST00000541410 FDPSP14324 419 aaKnown RBP17.07■□□□□ 0.32
CLIP1-216ENST00000541410 ZNF445P59923 1031 aa17.07■□□□□ 0.32
CLIP1-216ENST00000541410 ZNF827Q17R98 1081 aa17.07■□□□□ 0.32
CLIP1-216ENST00000541410 TMEM87AQ8NBN3 555 aa17.07■□□□□ 0.32
CLIP1-216ENST00000541410 LLPHQ9BRT6 129 aaKnown RBP17.07■□□□□ 0.32
CLIP1-216ENST00000541410 MECOMQ03112 1051 aa17.06■□□□□ 0.32
CLIP1-216ENST00000541410 EVX2Q03828 476 aa17.06■□□□□ 0.32
CLIP1-216ENST00000541410 ALX1Q15699 326 aa17.06■□□□□ 0.32
CLIP1-216ENST00000541410 SLC4A8Q2Y0W8 1093 aa17.06■□□□□ 0.32
CLIP1-216ENST00000541410 APBA3O96018 575 aa17.06■□□□□ 0.32
CLIP1-216ENST00000541410 KRT85P78386 507 aa17.06■□□□□ 0.32
CLIP1-216ENST00000541410 MICU3Q86XE3 530 aa17.06■□□□□ 0.32
CLIP1-216ENST00000541410 RIOK1Q9BRS2 568 aaKnown RBP17.06■□□□□ 0.32
CLIP1-216ENST00000541410 NACAP1Q9BZK3 213 aa17.06■□□□□ 0.32
CLIP1-216ENST00000541410 AATFQ9NY61 560 aaKnown RBP eCLIP17.06■□□□□ 0.32
CLIP1-216ENST00000541410 ANGEL1Q9UNK9 670 aaKnown RBP17.06■□□□□ 0.32
CLIP1-216ENST00000541410 PNPLA7Q6ZV29 1317 aa17.05■□□□□ 0.32
CLIP1-216ENST00000541410 SALL1Q9NSC2 1324 aa17.05■□□□□ 0.32
CLIP1-216ENST00000541410 EVCP57679 992 aa17.05■□□□□ 0.32
CLIP1-216ENST00000541410 ST5P78524 1137 aa17.05■□□□□ 0.32
CLIP1-216ENST00000541410 AKNAD1Q5T1N1 836 aa17.05■□□□□ 0.32
CLIP1-216ENST00000541410 NFXL1Q6ZNB6 911 aa17.05■□□□□ 0.32
CLIP1-216ENST00000541410 MFSD6Q6ZSS7 791 aa17.05■□□□□ 0.32
CLIP1-216ENST00000541410 FTOQ9C0B1 505 aaKnown RBP eCLIP17.05■□□□□ 0.32
CLIP1-216ENST00000541410 RBSNQ9H1K0 784 aa17.05■□□□□ 0.32
CLIP1-216ENST00000541410 SH2B2O14492 632 aaPredicted RBP17.04■□□□□ 0.32
CLIP1-216ENST00000541410 ADD1P35611 737 aaKnown RBP17.04■□□□□ 0.32
CLIP1-216ENST00000541410 UBE2HP62256 183 aa17.04■□□□□ 0.32
CLIP1-216ENST00000541410 RESTQ13127 1097 aa17.04■□□□□ 0.32
CLIP1-216ENST00000541410 NSUN4Q96CB9 384 aaKnown RBP17.04■□□□□ 0.32
CLIP1-216ENST00000541410 CPLX1O14810 134 aa17.04■□□□□ 0.32
CLIP1-216ENST00000541410 GNAT2P19087 354 aa17.04■□□□□ 0.32
CLIP1-216ENST00000541410 RBM6P78332 1123 aaKnown RBP17.04■□□□□ 0.32
CLIP1-216ENST00000541410 GPSM2P81274 684 aa17.04■□□□□ 0.32
CLIP1-216ENST00000541410 HMGN5P82970 282 aaKnown RBP17.04■□□□□ 0.32
CLIP1-216ENST00000541410 TMEM67Q5HYA8 995 aa17.04■□□□□ 0.32
CLIP1-216ENST00000541410 FBXL16Q8N461 479 aa17.04■□□□□ 0.32
CLIP1-216ENST00000541410 IGDCC4Q8TDY8 1250 aa17.04■□□□□ 0.32
CLIP1-216ENST00000541410 MYH2Q9UKX2 1941 aa17.04■□□□□ 0.32
CLIP1-216ENST00000541410 IFIT3O14879 490 aaKnown RBP17.03■□□□□ 0.32
CLIP1-216ENST00000541410 PPARAQ07869 468 aa17.03■□□□□ 0.32
CLIP1-216ENST00000541410 POLRMTO00411 1230 aaKnown RBP17.03■□□□□ 0.32
CLIP1-216ENST00000541410 RNF214Q8ND24 703 aa17.03■□□□□ 0.32
CLIP1-216ENST00000541410 AIFM3Q96NN9 605 aa17.03■□□□□ 0.32
CLIP1-216ENST00000541410 UBE2Q2LH0YL09 131 aa17.02■□□□□ 0.32
CLIP1-216ENST00000541410 PRDM1O75626 825 aa17.02■□□□□ 0.32
CLIP1-216ENST00000541410 CDC27P30260 824 aa17.02■□□□□ 0.32
CLIP1-216ENST00000541410 GRIK5Q16478 980 aa17.02■□□□□ 0.32
CLIP1-216ENST00000541410 APOA5Q6Q788 366 aa17.02■□□□□ 0.32
CLIP1-216ENST00000541410 SPATA32Q96LK8 384 aa17.02■□□□□ 0.32
CLIP1-216ENST00000541410 LY9Q9HBG7 655 aa17.02■□□□□ 0.32
CLIP1-216ENST00000541410 ORC3Q9UBD5 711 aaPredicted RBP17.02■□□□□ 0.32
CLIP1-216ENST00000541410 IRS2Q9Y4H2 1338 aa17.02■□□□□ 0.32
CLIP1-216ENST00000541410 NASPP49321 788 aaPredicted RBP17.02■□□□□ 0.31
CLIP1-216ENST00000541410 METAP2P50579 478 aaKnown RBP eCLIP17.02■□□□□ 0.31
CLIP1-216ENST00000541410 LRSAM1Q6UWE0 723 aa17.02■□□□□ 0.31
CLIP1-216ENST00000541410 COL23A1Q86Y22 540 aaPredicted RBP17.02■□□□□ 0.31
CLIP1-216ENST00000541410 PHKBQ93100 1093 aa17.02■□□□□ 0.31
CLIP1-216ENST00000541410 UFL1O94874 794 aa17.01■□□□□ 0.31
CLIP1-216ENST00000541410 MSL1Q68DK7 614 aa17.01■□□□□ 0.31
CLIP1-216ENST00000541410 ISY1Q9ULR0 285 aaKnown RBP17.01■□□□□ 0.31
CLIP1-216ENST00000541410 ZMYM6O95789 1325 aa17.01■□□□□ 0.31
CLIP1-216ENST00000541410 XDHP47989 1333 aa17.01■□□□□ 0.31
CLIP1-216ENST00000541410 CRY2Q49AN0 593 aa17.01■□□□□ 0.31
CLIP1-216ENST00000541410 OLFM4Q6UX06 510 aa17.01■□□□□ 0.31
CLIP1-216ENST00000541410 LEO1Q8WVC0 666 aaPredicted RBP17.01■□□□□ 0.31
CLIP1-216ENST00000541410 STAG1Q8WVM7 1258 aa17.01■□□□□ 0.31
CLIP1-216ENST00000541410 CCDC88AQ3V6T2 1871 aa17■□□□□ 0.31
CLIP1-216ENST00000541410 SEMA3EO15041 775 aa17■□□□□ 0.31
CLIP1-216ENST00000541410 DIXDC1Q155Q3 683 aa17■□□□□ 0.31
CLIP1-216ENST00000541410 SYAP1Q96A49 352 aaPredicted RBP17■□□□□ 0.31
CLIP1-216ENST00000541410 WDR19Q8NEZ3 1342 aa17■□□□□ 0.31
CLIP1-216ENST00000541410 PDIA4P13667 645 aaKnown RBP17■□□□□ 0.31
CLIP1-216ENST00000541410 LIG1P18858 919 aa17■□□□□ 0.31
CLIP1-216ENST00000541410 CSPP1Q1MSJ5 1256 aa17■□□□□ 0.31
CLIP1-216ENST00000541410 ZNF772Q68DY9 489 aaPredicted RBP17■□□□□ 0.31
CLIP1-216ENST00000541410 DZIP1Q86YF9 867 aaKnown RBP17■□□□□ 0.31
CLIP1-216ENST00000541410 CMTR1Q8N1G2 835 aaKnown RBP17■□□□□ 0.31
CLIP1-216ENST00000541410 CCDC82Q8N4S0 544 aa17■□□□□ 0.31
CLIP1-216ENST00000541410 TMEM87BQ96K49 555 aa17■□□□□ 0.31
CLIP1-216ENST00000541410 KRT23Q9C075 422 aa17■□□□□ 0.31
CLIP1-216ENST00000541410 USP17L12C9JPN9 530 aa16.99■□□□□ 0.31
CLIP1-216ENST00000541410 USP17L21D6R901 530 aa16.99■□□□□ 0.31
CLIP1-216ENST00000541410 ZBTB43O43298 467 aa16.99■□□□□ 0.31
CLIP1-216ENST00000541410 ILDR1Q86SU0 546 aaPredicted RBP16.99■□□□□ 0.31
CLIP1-216ENST00000541410 RBM17Q96I25 401 aaKnown RBP16.99■□□□□ 0.31
CLIP1-216ENST00000541410 C8orf76Q96K31 380 aa16.99■□□□□ 0.31
CLIP1-216ENST00000541410 CNNM2Q9H8M5 875 aa16.99■□□□□ 0.31
CLIP1-216ENST00000541410 KIF3AQ9Y496 699 aa16.99■□□□□ 0.31
CLIP1-216ENST00000541410 CCDC69A6NI79 296 aa16.99■□□□□ 0.31
CLIP1-216ENST00000541410 DHX16O60231 1041 aaKnown RBP16.99■□□□□ 0.31
CLIP1-216ENST00000541410 POLR3DP05423 398 aaPredicted RBP16.99■□□□□ 0.31
CLIP1-216ENST00000541410 CYP2D6P10635 497 aa16.99■□□□□ 0.31
CLIP1-216ENST00000541410 GIMAP6Q6P9H5 292 aa16.99■□□□□ 0.31
CLIP1-216ENST00000541410 LEMD3Q9Y2U8 911 aa16.99■□□□□ 0.31
CLIP1-216ENST00000541410 SLC12A7Q9Y666 1083 aa16.99■□□□□ 0.31
CLIP1-216ENST00000541410 MYH15Q9Y2K3 1946 aa16.99■□□□□ 0.31
CLIP1-216ENST00000541410 GOLGA8AA7E2F4 631 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms