RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 CLASRPQ8N2M8 674 aaKnown RBP16.06■□□□□ 0.16
LTBR-208ENST00000541005 IL1RAPL2Q9NP60 686 aa16.06■□□□□ 0.16
LTBR-208ENST00000541005 WBP1LQ9NX94 342 aa16.06■□□□□ 0.16
LTBR-208ENST00000541005 UNCXA6NJT0 531 aa16.05■□□□□ 0.16
LTBR-208ENST00000541005 TCP10L2B9ZVM9 353 aa16.05■□□□□ 0.16
LTBR-208ENST00000541005 MAP2K1Q02750 393 aaPredicted RBP16.05■□□□□ 0.16
LTBR-208ENST00000541005 MECOMQ03112 1051 aa16.05■□□□□ 0.16
LTBR-208ENST00000541005 LDLRAD1Q5T700 205 aa16.05■□□□□ 0.16
LTBR-208ENST00000541005 NBPF12Q5TAG4 269 aaPredicted RBP16.05■□□□□ 0.16
LTBR-208ENST00000541005 CDC42EP5Q6NZY7 148 aa16.05■□□□□ 0.16
LTBR-208ENST00000541005 MOB2Q70IA6 237 aa16.05■□□□□ 0.16
LTBR-208ENST00000541005 RASAL3Q86YV0 1011 aa16.05■□□□□ 0.16
LTBR-208ENST00000541005 NSUN4Q96CB9 384 aaKnown RBP16.05■□□□□ 0.16
LTBR-208ENST00000541005 UBE2Q2LH0YL09 131 aa16.04■□□□□ 0.16
LTBR-208ENST00000541005 PPP1R12BO60237 982 aaPredicted RBP16.04■□□□□ 0.16
LTBR-208ENST00000541005 AOC2O75106 756 aa16.04■□□□□ 0.16
LTBR-208ENST00000541005 CYP2E1P05181 493 aaPredicted RBP16.04■□□□□ 0.16
LTBR-208ENST00000541005 ZNF157P51786 506 aaPredicted RBP16.04■□□□□ 0.16
LTBR-208ENST00000541005 CACNB3P54284 484 aa16.04■□□□□ 0.16
LTBR-208ENST00000541005 GSTO1P78417 241 aa16.04■□□□□ 0.16
LTBR-208ENST00000541005 TTLL12Q14166 644 aaPredicted RBP16.04■□□□□ 0.16
LTBR-208ENST00000541005 TBC1D9Q6ZT07 1266 aa16.04■□□□□ 0.16
LTBR-208ENST00000541005 CRBNQ96SW2 442 aa16.04■□□□□ 0.16
LTBR-208ENST00000541005 TMEM39BQ9GZU3 492 aa16.04■□□□□ 0.16
LTBR-208ENST00000541005 DCTPP1Q9H773 170 aa16.04■□□□□ 0.16
LTBR-208ENST00000541005 PCDHB15Q9Y5E8 787 aa16.04■□□□□ 0.16
LTBR-208ENST00000541005 MYH1P12882 1939 aa16.04■□□□□ 0.16
LTBR-208ENST00000541005 GPR75-ASB3A0A0A6YYF3 556 aa16.03■□□□□ 0.16
LTBR-208ENST00000541005 MAP4K4O95819 1239 aaPredicted RBP16.03■□□□□ 0.16
LTBR-208ENST00000541005 GRM1Q13255 1194 aa16.03■□□□□ 0.16
LTBR-208ENST00000541005 AAMPQ13685 434 aa16.03■□□□□ 0.16
LTBR-208ENST00000541005 CDAN1Q8IWY9 1227 aa16.03■□□□□ 0.16
LTBR-208ENST00000541005 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.03■□□□□ 0.16
LTBR-208ENST00000541005 IDI2Q9BXS1 227 aa16.03■□□□□ 0.16
LTBR-208ENST00000541005 LRRCC1Q9C099 1032 aa16.03■□□□□ 0.16
LTBR-208ENST00000541005 SNRKQ9NRH2 765 aa16.03■□□□□ 0.16
LTBR-208ENST00000541005 ANGEL1Q9UNK9 670 aaKnown RBP16.03■□□□□ 0.16
LTBR-208ENST00000541005 COL2A1P02458 1487 aaPredicted RBP16.03■□□□□ 0.16
LTBR-208ENST00000541005 APBB1O00213 710 aa16.02■□□□□ 0.16
LTBR-208ENST00000541005 LDHCP07864 332 aa16.02■□□□□ 0.16
LTBR-208ENST00000541005 ZAP70P43403 619 aa16.02■□□□□ 0.16
LTBR-208ENST00000541005 FAM151AQ8WW52 585 aa16.02■□□□□ 0.16
LTBR-208ENST00000541005 RAI14Q9P0K7 980 aa16.02■□□□□ 0.16
LTBR-208ENST00000541005 LRP2BPQ9P2M1 347 aa16.02■□□□□ 0.16
LTBR-208ENST00000541005 SIPA1L1O43166 1804 aa16.02■□□□□ 0.16
LTBR-208ENST00000541005 DOCK1Q14185 1865 aa16.01■□□□□ 0.15
LTBR-208ENST00000541005 ATAD5Q96QE3 1844 aa16.01■□□□□ 0.15
LTBR-208ENST00000541005 NPM3O75607 178 aaKnown RBP16.01■□□□□ 0.15
LTBR-208ENST00000541005 IFIT2P09913 472 aaKnown RBP16.01■□□□□ 0.15
LTBR-208ENST00000541005 BTDP43251 543 aa16.01■□□□□ 0.15
LTBR-208ENST00000541005 IREB2P48200 963 aaKnown RBP16.01■□□□□ 0.15
LTBR-208ENST00000541005 RHBDL3P58872 404 aa16.01■□□□□ 0.15
LTBR-208ENST00000541005 NFIAQ12857 509 aa16.01■□□□□ 0.15
LTBR-208ENST00000541005 TMED8Q6PL24 325 aaPredicted RBP16.01■□□□□ 0.15
LTBR-208ENST00000541005 HOOK2Q96ED9 719 aa16.01■□□□□ 0.15
LTBR-208ENST00000541005 ZIC5Q96T25 663 aa16.01■□□□□ 0.15
LTBR-208ENST00000541005 PIH1D3Q9NQM4 214 aaKnown RBP16.01■□□□□ 0.15
LTBR-208ENST00000541005 USP40Q9NVE5 1235 aa16.01■□□□□ 0.15
LTBR-208ENST00000541005 FAM198AQ9UFP1 575 aa16.01■□□□□ 0.15
LTBR-208ENST00000541005 DDX60LQ5H9U9 1706 aaKnown RBP16■□□□□ 0.15
LTBR-208ENST00000541005 PTPRFP10586 1907 aa16■□□□□ 0.15
LTBR-208ENST00000541005 ENTPD3O75355 529 aa16■□□□□ 0.15
LTBR-208ENST00000541005 USP2O75604 605 aaPredicted RBP16■□□□□ 0.15
LTBR-208ENST00000541005 WDHD1O75717 1129 aaPredicted RBP16■□□□□ 0.15
LTBR-208ENST00000541005 PRKG1Q13976 671 aa16■□□□□ 0.15
LTBR-208ENST00000541005 REM2Q8IYK8 340 aaPredicted RBP16■□□□□ 0.15
LTBR-208ENST00000541005 AIDAQ96BJ3 306 aa16■□□□□ 0.15
LTBR-208ENST00000541005 FZD1Q9UP38 647 aa16■□□□□ 0.15
LTBR-208ENST00000541005 CASP8AP2Q9UKL3 1982 aa16■□□□□ 0.15
LTBR-208ENST00000541005 ATRNL1Q5VV63 1379 aa16■□□□□ 0.15
LTBR-208ENST00000541005 NAV1Q8NEY1 1877 aa15.99■□□□□ 0.15
LTBR-208ENST00000541005 PHIPQ8WWQ0 1821 aa15.99■□□□□ 0.15
LTBR-208ENST00000541005 FOXN1O15353 648 aa15.99■□□□□ 0.15
LTBR-208ENST00000541005 CA12O43570 354 aa15.99■□□□□ 0.15
LTBR-208ENST00000541005 NAA16Q6N069 864 aaPredicted RBP15.99■□□□□ 0.15
LTBR-208ENST00000541005 ANKRD13AQ8IZ07 590 aa15.99■□□□□ 0.15
LTBR-208ENST00000541005 ATP5JP18859 108 aa15.98■□□□□ 0.15
LTBR-208ENST00000541005 CTCFP49711 727 aaPredicted RBP15.98■□□□□ 0.15
LTBR-208ENST00000541005 RGS3P49796 1198 aa15.98■□□□□ 0.15
LTBR-208ENST00000541005 PPP4CP60510 307 aa15.98■□□□□ 0.15
LTBR-208ENST00000541005 KIF23Q02241 960 aaPredicted RBP15.98■□□□□ 0.15
LTBR-208ENST00000541005 TCP10Q12799 353 aa15.98■□□□□ 0.15
LTBR-208ENST00000541005 HDAC1Q13547 482 aaPredicted RBP15.98■□□□□ 0.15
LTBR-208ENST00000541005 DCAF15Q66K64 600 aa15.98■□□□□ 0.15
LTBR-208ENST00000541005 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.98■□□□□ 0.15
LTBR-208ENST00000541005 CLMNQ96JQ2 1002 aa15.98■□□□□ 0.15
LTBR-208ENST00000541005 ZBTB48P10074 688 aaPredicted RBP15.97■□□□□ 0.15
LTBR-208ENST00000541005 PLCG2P16885 1265 aa15.97■□□□□ 0.15
LTBR-208ENST00000541005 TTF1Q15361 905 aaPredicted RBP15.97■□□□□ 0.15
LTBR-208ENST00000541005 SPRYD7Q5W111 196 aa15.97■□□□□ 0.15
LTBR-208ENST00000541005 ADGRA1Q86SQ6 560 aa15.97■□□□□ 0.15
LTBR-208ENST00000541005 BEGAINQ9BUH8 593 aa15.97■□□□□ 0.15
LTBR-208ENST00000541005 ANTXR1Q9H6X2 564 aa15.97■□□□□ 0.15
LTBR-208ENST00000541005 DDX4Q9NQI0 724 aaKnown RBP15.97■□□□□ 0.15
LTBR-208ENST00000541005 NDUFB9Q9Y6M9 179 aa15.97■□□□□ 0.15
LTBR-208ENST00000541005 SMARCA5O60264 1052 aaPredicted RBP15.96■□□□□ 0.15
LTBR-208ENST00000541005 IDH1O75874 414 aaKnown RBP15.96■□□□□ 0.15
LTBR-208ENST00000541005 HSPA8P11142 646 aaKnown RBP15.96■□□□□ 0.15
LTBR-208ENST00000541005 MAP3K12Q12852 859 aa15.96■□□□□ 0.15
LTBR-208ENST00000541005 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms