RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 LAMB1P07942 1786 aa17.47■□□□□ 0.39
USP28-209ENST00000540925 MYH2Q9UKX2 1941 aa17.47■□□□□ 0.39
USP28-209ENST00000540925 OTOFQ9HC10 1997 aa17.46■□□□□ 0.39
USP28-209ENST00000540925 CA12O43570 354 aa17.46■□□□□ 0.39
USP28-209ENST00000540925 TNNI2P48788 182 aa17.46■□□□□ 0.39
USP28-209ENST00000540925 PRKG1Q13976 671 aa17.46■□□□□ 0.39
USP28-209ENST00000540925 TTLL12Q14166 644 aaPredicted RBP17.46■□□□□ 0.39
USP28-209ENST00000540925 GORABQ5T7V8 394 aa17.46■□□□□ 0.39
USP28-209ENST00000540925 SPTY2D1Q68D10 685 aaPredicted RBP17.46■□□□□ 0.39
USP28-209ENST00000540925 ERC1Q8IUD2 1116 aa17.46■□□□□ 0.39
USP28-209ENST00000540925 PPP1R12BO60237 982 aaPredicted RBP17.45■□□□□ 0.38
USP28-209ENST00000540925 MECOMQ03112 1051 aa17.45■□□□□ 0.38
USP28-209ENST00000540925 RHPN1Q8TCX5 695 aa17.45■□□□□ 0.38
USP28-209ENST00000540925 ABCF2Q9UG63 623 aa17.45■□□□□ 0.38
USP28-209ENST00000540925 LBX1P52954 281 aa17.44■□□□□ 0.38
USP28-209ENST00000540925 NFIAQ12857 509 aa17.44■□□□□ 0.38
USP28-209ENST00000540925 HSP90AB4PQ58FF6 505 aa17.44■□□□□ 0.38
USP28-209ENST00000540925 TBC1D9Q6ZT07 1266 aa17.44■□□□□ 0.38
USP28-209ENST00000540925 REM2Q8IYK8 340 aaPredicted RBP17.44■□□□□ 0.38
USP28-209ENST00000540925 NSUN4Q96CB9 384 aaKnown RBP17.44■□□□□ 0.38
USP28-209ENST00000540925 CLMNQ96JQ2 1002 aa17.44■□□□□ 0.38
USP28-209ENST00000540925 TMOD2Q9NZR1 351 aa17.44■□□□□ 0.38
USP28-209ENST00000540925 FAM198AQ9UFP1 575 aa17.44■□□□□ 0.38
USP28-209ENST00000540925 MROH7-TTC4A0A0A0MT08 1334 aa17.44■□□□□ 0.38
USP28-209ENST00000540925 GPR75-ASB3A0A0A6YYF3 556 aa17.43■□□□□ 0.38
USP28-209ENST00000540925 HMMRO75330 724 aa17.43■□□□□ 0.38
USP28-209ENST00000540925 CYP2E1P05181 493 aaPredicted RBP17.43■□□□□ 0.38
USP28-209ENST00000540925 CCDC158Q5M9N0 1113 aa17.43■□□□□ 0.38
USP28-209ENST00000540925 ERICH6Q7L0X2 663 aa17.43■□□□□ 0.38
USP28-209ENST00000540925 DZIP1Q86YF9 867 aaKnown RBP17.43■□□□□ 0.38
USP28-209ENST00000540925 FAM151AQ8WW52 585 aa17.43■□□□□ 0.38
USP28-209ENST00000540925 BEGAINQ9BUH8 593 aa17.43■□□□□ 0.38
USP28-209ENST00000540925 IDI2Q9BXS1 227 aa17.43■□□□□ 0.38
USP28-209ENST00000540925 CCDC8Q9H0W5 538 aaPredicted RBP17.43■□□□□ 0.38
USP28-209ENST00000540925 SAGE1Q9NXZ1 904 aa17.43■□□□□ 0.38
USP28-209ENST00000540925 IREB2P48200 963 aaKnown RBP17.42■□□□□ 0.38
USP28-209ENST00000540925 RRP1P56182 461 aaKnown RBP17.42■□□□□ 0.38
USP28-209ENST00000540925 TTC39AQ5SRH9 613 aa17.42■□□□□ 0.38
USP28-209ENST00000540925 SPRYD7Q5W111 196 aa17.42■□□□□ 0.38
USP28-209ENST00000540925 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.42■□□□□ 0.38
USP28-209ENST00000540925 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.42■□□□□ 0.38
USP28-209ENST00000540925 USP40Q9NVE5 1235 aa17.42■□□□□ 0.38
USP28-209ENST00000540925 MAST2Q6P0Q8 1798 aa17.42■□□□□ 0.38
USP28-209ENST00000540925 ATRNL1Q5VV63 1379 aa17.41■□□□□ 0.38
USP28-209ENST00000540925 IGSF3O75054 1194 aa17.41■□□□□ 0.38
USP28-209ENST00000540925 WDHD1O75717 1129 aaPredicted RBP17.41■□□□□ 0.38
USP28-209ENST00000540925 TM4SF4P48230 202 aa17.41■□□□□ 0.38
USP28-209ENST00000540925 RHBDL3P58872 404 aa17.41■□□□□ 0.38
USP28-209ENST00000540925 SLF2Q8IX21 1173 aa17.41■□□□□ 0.38
USP28-209ENST00000540925 ANKRD13AQ8IZ07 590 aa17.41■□□□□ 0.38
USP28-209ENST00000540925 KIF1BPQ96EK5 621 aa17.41■□□□□ 0.38
USP28-209ENST00000540925 YTHDC1Q96MU7 727 aaKnown RBP17.41■□□□□ 0.38
USP28-209ENST00000540925 SNRKQ9NRH2 765 aa17.41■□□□□ 0.38
USP28-209ENST00000540925 RNF186Q9NXI6 227 aa17.41■□□□□ 0.38
USP28-209ENST00000540925 RAB11FIP3O75154 756 aa17.4■□□□□ 0.38
USP28-209ENST00000540925 ZBTB48P10074 688 aaPredicted RBP17.4■□□□□ 0.38
USP28-209ENST00000540925 GJA5P36382 358 aa17.4■□□□□ 0.38
USP28-209ENST00000540925 BTDP43251 543 aa17.4■□□□□ 0.38
USP28-209ENST00000540925 ZAP70P43403 619 aa17.4■□□□□ 0.38
USP28-209ENST00000540925 AACSQ86V21 672 aa17.4■□□□□ 0.38
USP28-209ENST00000540925 ZFPM1Q8IX07 1006 aa17.4■□□□□ 0.38
USP28-209ENST00000540925 SLC10A4Q96EP9 437 aa17.4■□□□□ 0.38
USP28-209ENST00000540925 WNK4Q96J92 1243 aa17.4■□□□□ 0.38
USP28-209ENST00000540925 IL1RAPL2Q9NP60 686 aa17.4■□□□□ 0.38
USP28-209ENST00000540925 TSKSQ9UJT2 592 aa17.4■□□□□ 0.38
USP28-209ENST00000540925 MYO5AQ9Y4I1 1855 aaKnown RBP17.39■□□□□ 0.38
USP28-209ENST00000540925 ENTPD3O75355 529 aa17.39■□□□□ 0.37
USP28-209ENST00000540925 NPM3O75607 178 aaKnown RBP17.39■□□□□ 0.37
USP28-209ENST00000540925 DDX4Q9NQI0 724 aaKnown RBP17.39■□□□□ 0.37
USP28-209ENST00000540925 PIH1D3Q9NQM4 214 aaKnown RBP17.39■□□□□ 0.37
USP28-209ENST00000540925 DOCK2Q92608 1830 aa17.38■□□□□ 0.37
USP28-209ENST00000540925 MAP4K4O95819 1239 aaPredicted RBP17.38■□□□□ 0.37
USP28-209ENST00000540925 RGS3P49796 1198 aa17.38■□□□□ 0.37
USP28-209ENST00000540925 GSTO1P78417 241 aa17.38■□□□□ 0.37
USP28-209ENST00000540925 MAP3K9P80192 1104 aa17.38■□□□□ 0.37
USP28-209ENST00000540925 VGLL4Q14135 290 aa17.38■□□□□ 0.37
USP28-209ENST00000540925 SH3BP5LQ7L8J4 393 aa17.38■□□□□ 0.37
USP28-209ENST00000540925 HOOK2Q96ED9 719 aa17.38■□□□□ 0.37
USP28-209ENST00000540925 RAI14Q9P0K7 980 aa17.38■□□□□ 0.37
USP28-209ENST00000540925 ZNF112Q9UJU3 913 aa17.38■□□□□ 0.37
USP28-209ENST00000540925 LDHCP07864 332 aa17.37■□□□□ 0.37
USP28-209ENST00000540925 MAP3K10Q02779 954 aa17.37■□□□□ 0.37
USP28-209ENST00000540925 TCP10Q12799 353 aa17.37■□□□□ 0.37
USP28-209ENST00000540925 MKRN3Q13064 507 aaKnown RBP17.37■□□□□ 0.37
USP28-209ENST00000540925 ADGRA1Q86SQ6 560 aa17.37■□□□□ 0.37
USP28-209ENST00000540925 CLASRPQ8N2M8 674 aaKnown RBP17.37■□□□□ 0.37
USP28-209ENST00000540925 CFHR5Q9BXR6 569 aa17.37■□□□□ 0.37
USP28-209ENST00000540925 LRP2BPQ9P2M1 347 aa17.37■□□□□ 0.37
USP28-209ENST00000540925 COL2A1P02458 1487 aaPredicted RBP17.37■□□□□ 0.37
USP28-209ENST00000540925 TESPA1A2RU30 521 aaPredicted RBP17.36■□□□□ 0.37
USP28-209ENST00000540925 TRPA1O75762 1119 aa17.36■□□□□ 0.37
USP28-209ENST00000540925 PPP4CP60510 307 aa17.36■□□□□ 0.37
USP28-209ENST00000540925 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.36■□□□□ 0.37
USP28-209ENST00000540925 ELP3Q9H9T3 547 aa17.36■□□□□ 0.37
USP28-209ENST00000540925 PCDHB15Q9Y5E8 787 aa17.36■□□□□ 0.37
USP28-209ENST00000540925 SNCAIPQ9Y6H5 919 aa17.36■□□□□ 0.37
USP28-209ENST00000540925 MANSC4A6NHS7 340 aaPredicted RBP17.35■□□□□ 0.37
USP28-209ENST00000540925 SREBF2Q12772 1141 aa17.35■□□□□ 0.37
USP28-209ENST00000540925 DCAF15Q66K64 600 aa17.35■□□□□ 0.37
USP28-209ENST00000540925 MIGA2Q7L4E1 593 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms