RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 FERMT3Q86UX7 667 aa8.56□□□□□ -1.04
MSH6-209ENST00000538136 PUS7LQ9H0K6 701 aaKnown RBP8.56□□□□□ -1.04
MSH6-209ENST00000538136 DEFB129Q9H1M3 183 aa8.56□□□□□ -1.04
MSH6-209ENST00000538136 NFKBIEO00221 500 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 RNF113AO15541 343 aaKnown RBP8.55□□□□□ -1.04
MSH6-209ENST00000538136 CSPG5O95196 566 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 CYP2E1P05181 493 aaPredicted RBP8.55□□□□□ -1.04
MSH6-209ENST00000538136 CC2D2BQ6DHV5 1058 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 LCORLQ8N3X6 602 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 C2orf69Q8N8R5 385 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 TRPM4Q8TD43 1214 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 A0A0D9SFI3 127 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 PTGER2P43116 358 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 SPP2Q13103 211 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 TRIM28Q13263 835 aaKnown RBP8.55□□□□□ -1.04
MSH6-209ENST00000538136 USH1GQ495M9 461 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 BLOC1S2Q6QNY1 142 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 EEPD1Q7L9B9 569 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 ATG9AQ7Z3C6 839 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 IQCA1Q86XH1 822 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 TRMT2AQ8IZ69 625 aaKnown RBP8.55□□□□□ -1.04
MSH6-209ENST00000538136 NOC3LQ8WTT2 800 aaKnown RBP8.55□□□□□ -1.04
MSH6-209ENST00000538136 KIFC2Q96AC6 838 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 C22orf23Q9BZE7 217 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 NWD1Q149M9 1564 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 NSMFQ6X4W1 530 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 NECAB1Q8N987 351 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 TBC1D22AQ8WUA7 517 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 KIF1AQ12756 1690 aa8.55□□□□□ -1.04
MSH6-209ENST00000538136 PDE4BQ07343 736 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 TMEM67Q5HYA8 995 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 NBPF12Q5TAG4 269 aaPredicted RBP8.54□□□□□ -1.04
MSH6-209ENST00000538136 CCDC174Q6PII3 467 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 ZNF541Q9H0D2 1346 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 IFT172Q9UG01 1749 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 TFAP4Q01664 338 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 STYK1Q6J9G0 422 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 FCHSD1Q86WN1 690 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 MYOZ2Q9NPC6 264 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 GOLGA6L4A6NEF3 574 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 TRPA1O75762 1119 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 IRX3P78415 501 aaPredicted RBP8.54□□□□□ -1.04
MSH6-209ENST00000538136 MCMDC2Q4G0Z9 681 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 CPLX2Q6PUV4 134 aaKnown RBP8.54□□□□□ -1.04
MSH6-209ENST00000538136 RBM8AQ9Y5S9 174 aaKnown RBP8.54□□□□□ -1.04
MSH6-209ENST00000538136 KIAA1210Q9ULL0 1709 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 FRMPD2Q68DX3 1309 aaPredicted RBP8.54□□□□□ -1.04
MSH6-209ENST00000538136 NUCB1Q02818 461 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 KIAA2012Q0VF49 1180 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 CDAN1Q8IWY9 1227 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 BRF1Q92994 677 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 UBA5Q9GZZ9 404 aa8.54□□□□□ -1.04
MSH6-209ENST00000538136 SMIM22K7EJ46 135 aa8.53□□□□□ -1.04
MSH6-209ENST00000538136 GH2P01242 217 aa8.53□□□□□ -1.04
MSH6-209ENST00000538136 BECN1Q14457 450 aa8.53□□□□□ -1.04
MSH6-209ENST00000538136 TTC6Q86TZ1 520 aa8.53□□□□□ -1.04
MSH6-209ENST00000538136 AHDC1Q5TGY3 1603 aaPredicted RBP8.53□□□□□ -1.04
MSH6-209ENST00000538136 SLC16A2P36021 539 aa8.53□□□□□ -1.04
MSH6-209ENST00000538136 TNFAIP1Q13829 316 aa8.53□□□□□ -1.04
MSH6-209ENST00000538136 RSBN1LQ6PCB5 846 aaPredicted RBP8.53□□□□□ -1.04
MSH6-209ENST00000538136 OSBP2Q969R2 916 aa8.53□□□□□ -1.04
MSH6-209ENST00000538136 NUP88Q99567 741 aaPredicted RBP8.53□□□□□ -1.04
MSH6-209ENST00000538136 U3KPZ7 1027 aaPredicted RBP8.53□□□□□ -1.04
MSH6-209ENST00000538136 TTC22Q5TAA0 569 aa8.53□□□□□ -1.04
MSH6-209ENST00000538136 CERKLQ49MI3 558 aaPredicted RBP8.52□□□□□ -1.05
MSH6-209ENST00000538136 ZNF589Q86UQ0 364 aaPredicted RBP8.52□□□□□ -1.05
MSH6-209ENST00000538136 KBTBD3Q8NAB2 608 aa8.52□□□□□ -1.05
MSH6-209ENST00000538136 KAT14Q9H8E8 782 aa8.52□□□□□ -1.05
MSH6-209ENST00000538136 ST18O60284 1047 aa8.52□□□□□ -1.05
MSH6-209ENST00000538136 SEC24BO95487 1268 aa8.52□□□□□ -1.05
MSH6-209ENST00000538136 INPP5BP32019 993 aa8.52□□□□□ -1.05
MSH6-209ENST00000538136 DHX8Q14562 1220 aaKnown RBP8.52□□□□□ -1.05
MSH6-209ENST00000538136 SF3A1Q15459 793 aaKnown RBP8.52□□□□□ -1.05
MSH6-209ENST00000538136 CYP4F22Q6NT55 531 aa8.52□□□□□ -1.05
MSH6-209ENST00000538136 GINS2Q9Y248 185 aa8.52□□□□□ -1.05
MSH6-209ENST00000538136 NMT2O60551 498 aa8.52□□□□□ -1.05
MSH6-209ENST00000538136 ANO1Q5XXA6 986 aa8.52□□□□□ -1.05
MSH6-209ENST00000538136 GZF1Q9H116 711 aaPredicted RBP8.52□□□□□ -1.05
MSH6-209ENST00000538136 FLOT1O75955 427 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 ZNF76P36508 570 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 CCDC83Q8IWF9 413 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 CTNNA3Q9UI47 895 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 GOLGA8BA8MQT2 603 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 CSF1RP07333 972 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 UBXN2AP68543 259 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 TRIM29Q14134 588 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 SUPT20HL1Q3ZLR7 823 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 ZFPM1Q8IX07 1006 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 GPHNQ9NQX3 736 aaPredicted RBP8.51□□□□□ -1.05
MSH6-209ENST00000538136 TMOD4Q9NZQ9 345 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 CYP46A1Q9Y6A2 500 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 RGPD5Q99666 1765 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 SDK1Q7Z5N4 2213 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 WNT10BO00744 389 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 IFIT1BQ5T764 474 aaKnown RBP8.51□□□□□ -1.05
MSH6-209ENST00000538136 KCTD1Q719H9 257 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 CNKSR2Q8WXI2 1034 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 APPBP2Q92624 585 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 ZNF341Q9BYN7 854 aa8.51□□□□□ -1.05
MSH6-209ENST00000538136 DAGLAQ9Y4D2 1042 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms