RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 NOL9Q5SY16 702 aaKnown RBP14.05□□□□□ -0.16
CLSTN3-206ENST00000535668 CD99L2Q8TCZ2 262 aa14.05□□□□□ -0.16
CLSTN3-206ENST00000535668 FAM163AQ96GL9 167 aaPredicted RBP14.05□□□□□ -0.16
CLSTN3-206ENST00000535668 TMOD2Q9NZR1 351 aa14.05□□□□□ -0.16
CLSTN3-206ENST00000535668 POTEFA5A3E0 1075 aa14.04□□□□□ -0.16
CLSTN3-206ENST00000535668 IRF6O14896 467 aa14.04□□□□□ -0.16
CLSTN3-206ENST00000535668 WDHD1O75717 1129 aaPredicted RBP14.04□□□□□ -0.16
CLSTN3-206ENST00000535668 TAF1CQ15572 869 aaPredicted RBP14.04□□□□□ -0.16
CLSTN3-206ENST00000535668 C17orf99Q6UX52 265 aa14.04□□□□□ -0.16
CLSTN3-206ENST00000535668 NBPF11Q86T75 865 aa14.04□□□□□ -0.16
CLSTN3-206ENST00000535668 FAM9BQ8IZU0 186 aa14.04□□□□□ -0.16
CLSTN3-206ENST00000535668 CNKSR2Q8WXI2 1034 aa14.04□□□□□ -0.16
CLSTN3-206ENST00000535668 COPRSQ9NQ92 184 aa14.04□□□□□ -0.16
CLSTN3-206ENST00000535668 ADGRA2Q96PE1 1338 aa14.04□□□□□ -0.16
CLSTN3-206ENST00000535668 RANBP2P49792 3224 aaKnown RBP14.04□□□□□ -0.16
CLSTN3-206ENST00000535668 NPM3O75607 178 aaKnown RBP14.03□□□□□ -0.16
CLSTN3-206ENST00000535668 SLC5A1P13866 664 aa14.03□□□□□ -0.16
CLSTN3-206ENST00000535668 CAPN2P17655 700 aa14.03□□□□□ -0.16
CLSTN3-206ENST00000535668 LACTBP83111 547 aaPredicted RBP14.03□□□□□ -0.16
CLSTN3-206ENST00000535668 ANKRD23Q86SG2 305 aa14.03□□□□□ -0.16
CLSTN3-206ENST00000535668 ARHGAP45Q92619 1136 aa14.03□□□□□ -0.16
CLSTN3-206ENST00000535668 IDI2Q9BXS1 227 aa14.03□□□□□ -0.16
CLSTN3-206ENST00000535668 ZNF341Q9BYN7 854 aa14.03□□□□□ -0.16
CLSTN3-206ENST00000535668 ATRNL1Q5VV63 1379 aa14.03□□□□□ -0.16
CLSTN3-206ENST00000535668 RFX7Q2KHR2 1363 aa14.02□□□□□ -0.17
CLSTN3-206ENST00000535668 BTBD19C9JJ37 291 aa14.02□□□□□ -0.17
CLSTN3-206ENST00000535668 CXCL11O14625 94 aa14.02□□□□□ -0.17
CLSTN3-206ENST00000535668 IL15P40933 162 aaPredicted RBP14.02□□□□□ -0.17
CLSTN3-206ENST00000535668 MTX1Q13505 466 aa14.02□□□□□ -0.17
CLSTN3-206ENST00000535668 MOGSQ13724 837 aa14.02□□□□□ -0.17
CLSTN3-206ENST00000535668 KLHDC4Q8TBB5 520 aa14.02□□□□□ -0.17
CLSTN3-206ENST00000535668 OTUD5Q96G74 571 aa14.02□□□□□ -0.17
CLSTN3-206ENST00000535668 WRNIP1Q96S55 665 aa14.02□□□□□ -0.17
CLSTN3-206ENST00000535668 DAGLAQ9Y4D2 1042 aa14.02□□□□□ -0.17
CLSTN3-206ENST00000535668 TRIOBPQ9H2D6 2365 aa14.01□□□□□ -0.17
CLSTN3-206ENST00000535668 GAKO14976 1311 aa14.01□□□□□ -0.17
CLSTN3-206ENST00000535668 FRAT2O75474 233 aaPredicted RBP14.01□□□□□ -0.17
CLSTN3-206ENST00000535668 MAP4K4O95819 1239 aaPredicted RBP14.01□□□□□ -0.17
CLSTN3-206ENST00000535668 CDC42EP5Q6NZY7 148 aa14.01□□□□□ -0.17
CLSTN3-206ENST00000535668 IQSEC3Q9UPP2 1182 aaPredicted RBP14.01□□□□□ -0.17
CLSTN3-206ENST00000535668 SLC45A1Q9Y2W3 748 aa14.01□□□□□ -0.17
CLSTN3-206ENST00000535668 PHF20L1A8MW92 1017 aa14□□□□□ -0.17
CLSTN3-206ENST00000535668 IGSF3O75054 1194 aa14□□□□□ -0.17
CLSTN3-206ENST00000535668 ENTPD3O75355 529 aa14□□□□□ -0.17
CLSTN3-206ENST00000535668 CHAF1AQ13111 956 aaPredicted RBP14□□□□□ -0.17
CLSTN3-206ENST00000535668 ZKSCAN4Q969J2 545 aaPredicted RBP14□□□□□ -0.17
CLSTN3-206ENST00000535668 GNL3LQ9NVN8 582 aaKnown RBP14□□□□□ -0.17
CLSTN3-206ENST00000535668 CEP126Q9P2H0 1117 aa14□□□□□ -0.17
CLSTN3-206ENST00000535668 FAM198AQ9UFP1 575 aa14□□□□□ -0.17
CLSTN3-206ENST00000535668 DENND2AQ9ULE3 1009 aa14□□□□□ -0.17
CLSTN3-206ENST00000535668 CACNB3P54284 484 aa13.99□□□□□ -0.17
CLSTN3-206ENST00000535668 SLC9C1Q4G0N8 1177 aa13.99□□□□□ -0.17
CLSTN3-206ENST00000535668 ZGPATQ8N5A5 531 aaKnown RBP13.99□□□□□ -0.17
CLSTN3-206ENST00000535668 TMEM106CQ9BVX2 250 aa13.99□□□□□ -0.17
CLSTN3-206ENST00000535668 PTCH2Q9Y6C5 1203 aa13.99□□□□□ -0.17
CLSTN3-206ENST00000535668 TBC1D12O60347 775 aa13.98□□□□□ -0.17
CLSTN3-206ENST00000535668 UBTFL1P0CB47 393 aaPredicted RBP13.98□□□□□ -0.17
CLSTN3-206ENST00000535668 BCRP11274 1271 aa13.98□□□□□ -0.17
CLSTN3-206ENST00000535668 PRDX5P30044 214 aa13.98□□□□□ -0.17
CLSTN3-206ENST00000535668 NFIAQ12857 509 aa13.98□□□□□ -0.17
CLSTN3-206ENST00000535668 KIF22Q14807 665 aa13.98□□□□□ -0.17
CLSTN3-206ENST00000535668 ATP2B3Q16720 1220 aa13.98□□□□□ -0.17
CLSTN3-206ENST00000535668 HABP4Q5JVS0 413 aaKnown RBP13.98□□□□□ -0.17
CLSTN3-206ENST00000535668 UBE2Q1Q7Z7E8 422 aa13.98□□□□□ -0.17
CLSTN3-206ENST00000535668 API5Q9BZZ5 524 aaKnown RBP13.98□□□□□ -0.17
CLSTN3-206ENST00000535668 SRRDQ9UH36 339 aa13.98□□□□□ -0.17
CLSTN3-206ENST00000535668 MYH13Q9UKX3 1938 aa13.98□□□□□ -0.17
CLSTN3-206ENST00000535668 LDHBP07195 334 aaKnown RBP13.97□□□□□ -0.17
CLSTN3-206ENST00000535668 EN2P19622 333 aaPredicted RBP13.97□□□□□ -0.17
CLSTN3-206ENST00000535668 INPP5BP32019 993 aa13.97□□□□□ -0.17
CLSTN3-206ENST00000535668 COL2A1P02458 1487 aaPredicted RBP13.97□□□□□ -0.17
CLSTN3-206ENST00000535668 A0A0G2JLL6 359 aaPredicted RBP13.96□□□□□ -0.17
CLSTN3-206ENST00000535668 HOXD10P28358 340 aa13.96□□□□□ -0.17
CLSTN3-206ENST00000535668 DIXDC1Q155Q3 683 aa13.96□□□□□ -0.17
CLSTN3-206ENST00000535668 CCDC102BQ68D86 513 aa13.96□□□□□ -0.17
CLSTN3-206ENST00000535668 GPAT2Q6NUI2 795 aa13.96□□□□□ -0.17
CLSTN3-206ENST00000535668 PRRT2Q7Z6L0 340 aaPredicted RBP13.96□□□□□ -0.17
CLSTN3-206ENST00000535668 SLF2Q8IX21 1173 aa13.96□□□□□ -0.17
CLSTN3-206ENST00000535668 SMC4Q9NTJ3 1288 aa13.96□□□□□ -0.17
CLSTN3-206ENST00000535668 PDHXO00330 501 aa13.95□□□□□ -0.18
CLSTN3-206ENST00000535668 CTNND1O60716 968 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-206ENST00000535668 CTGFP29279 349 aa13.95□□□□□ -0.18
CLSTN3-206ENST00000535668 MIGA2Q7L4E1 593 aa13.95□□□□□ -0.18
CLSTN3-206ENST00000535668 FASTKD5Q7L8L6 764 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-206ENST00000535668 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.95□□□□□ -0.18
CLSTN3-206ENST00000535668 NKX2-3Q8TAU0 364 aa13.95□□□□□ -0.18
CLSTN3-206ENST00000535668 TRIM47Q96LD4 638 aa13.95□□□□□ -0.18
CLSTN3-206ENST00000535668 ARHGAP39Q9C0H5 1083 aa13.95□□□□□ -0.18
CLSTN3-206ENST00000535668 AFG3L2Q9Y4W6 797 aa13.95□□□□□ -0.18
CLSTN3-206ENST00000535668 GPR75-ASB3A0A0A6YYF3 556 aa13.94□□□□□ -0.18
CLSTN3-206ENST00000535668 PTPRAP18433 802 aa13.94□□□□□ -0.18
CLSTN3-206ENST00000535668 PHKA1P46020 1223 aa13.94□□□□□ -0.18
CLSTN3-206ENST00000535668 RARSP54136 660 aaKnown RBP13.94□□□□□ -0.18
CLSTN3-206ENST00000535668 SPTY2D1Q68D10 685 aaPredicted RBP13.94□□□□□ -0.18
CLSTN3-206ENST00000535668 SH3BP5LQ7L8J4 393 aa13.94□□□□□ -0.18
CLSTN3-206ENST00000535668 SCYL3Q8IZE3 742 aa13.94□□□□□ -0.18
CLSTN3-206ENST00000535668 CDCA7LQ96GN5 454 aa13.94□□□□□ -0.18
CLSTN3-206ENST00000535668 PARK7Q99497 189 aaKnown RBP13.94□□□□□ -0.18
CLSTN3-206ENST00000535668 USP40Q9NVE5 1235 aa13.94□□□□□ -0.18
CLSTN3-206ENST00000535668 NOB1Q9ULX3 412 aaKnown RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms