RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ECE1P42892 770 aa15.87■□□□□ 0.13
VPS28-216ENST00000533806 RHBDL3P58872 404 aa15.87■□□□□ 0.13
VPS28-216ENST00000533806 SUPT20HL1Q3ZLR7 823 aa15.87■□□□□ 0.13
VPS28-216ENST00000533806 RGMBQ6NW40 437 aa15.87■□□□□ 0.13
VPS28-216ENST00000533806 SLF2Q8IX21 1173 aa15.87■□□□□ 0.13
VPS28-216ENST00000533806 EXOC6Q8TAG9 804 aa15.87■□□□□ 0.13
VPS28-216ENST00000533806 IDI2Q9BXS1 227 aa15.87■□□□□ 0.13
VPS28-216ENST00000533806 TMEM39BQ9GZU3 492 aa15.87■□□□□ 0.13
VPS28-216ENST00000533806 USP40Q9NVE5 1235 aa15.87■□□□□ 0.13
VPS28-216ENST00000533806 FAM198AQ9UFP1 575 aa15.87■□□□□ 0.13
VPS28-216ENST00000533806 PAPPA2Q9BXP8 1791 aa15.87■□□□□ 0.13
VPS28-216ENST00000533806 UBE2Q2LH0YL09 131 aa15.86■□□□□ 0.13
VPS28-216ENST00000533806 ATP5JP18859 108 aa15.86■□□□□ 0.13
VPS28-216ENST00000533806 NF2P35240 595 aa15.86■□□□□ 0.13
VPS28-216ENST00000533806 TNNI2P48788 182 aa15.86■□□□□ 0.13
VPS28-216ENST00000533806 NFIAQ12857 509 aa15.86■□□□□ 0.13
VPS28-216ENST00000533806 ANTXR1Q9H6X2 564 aa15.86■□□□□ 0.13
VPS28-216ENST00000533806 RAI14Q9P0K7 980 aa15.86■□□□□ 0.13
VPS28-216ENST00000533806 LRP2BPQ9P2M1 347 aa15.86■□□□□ 0.13
VPS28-216ENST00000533806 NDUFB9Q9Y6M9 179 aa15.86■□□□□ 0.13
VPS28-216ENST00000533806 USP2O75604 605 aaPredicted RBP15.85■□□□□ 0.13
VPS28-216ENST00000533806 WDHD1O75717 1129 aaPredicted RBP15.85■□□□□ 0.13
VPS28-216ENST00000533806 MAP2K2P36507 400 aa15.85■□□□□ 0.13
VPS28-216ENST00000533806 BTDP43251 543 aa15.85■□□□□ 0.13
VPS28-216ENST00000533806 GSTO1P78417 241 aa15.85■□□□□ 0.13
VPS28-216ENST00000533806 FAM151AQ8WW52 585 aa15.85■□□□□ 0.13
VPS28-216ENST00000533806 FZD1Q9UP38 647 aa15.85■□□□□ 0.13
VPS28-216ENST00000533806 RPAP1Q9BWH6 1393 aaPredicted RBP15.85■□□□□ 0.13
VPS28-216ENST00000533806 THSD7BQ9C0I4 1608 aa15.84■□□□□ 0.13
VPS28-216ENST00000533806 UNCXA6NJT0 531 aa15.84■□□□□ 0.13
VPS28-216ENST00000533806 AOC2O75106 756 aa15.84■□□□□ 0.13
VPS28-216ENST00000533806 LDHCP07864 332 aa15.84■□□□□ 0.13
VPS28-216ENST00000533806 SLC10A3P09131 477 aa15.84■□□□□ 0.13
VPS28-216ENST00000533806 PPP4CP60510 307 aa15.84■□□□□ 0.13
VPS28-216ENST00000533806 ADGRA1Q86SQ6 560 aa15.84■□□□□ 0.13
VPS28-216ENST00000533806 ZFPM1Q8IX07 1006 aa15.84■□□□□ 0.13
VPS28-216ENST00000533806 CCDC102AQ96A19 550 aa15.84■□□□□ 0.13
VPS28-216ENST00000533806 ZIC5Q96T25 663 aa15.84■□□□□ 0.13
VPS28-216ENST00000533806 WBP1LQ9NX94 342 aa15.84■□□□□ 0.13
VPS28-216ENST00000533806 TMOD2Q9NZR1 351 aa15.84■□□□□ 0.13
VPS28-216ENST00000533806 PPP1R12BO60237 982 aaPredicted RBP15.83■□□□□ 0.12
VPS28-216ENST00000533806 NPM3O75607 178 aaKnown RBP15.83■□□□□ 0.12
VPS28-216ENST00000533806 MAP4K4O95819 1239 aaPredicted RBP15.83■□□□□ 0.12
VPS28-216ENST00000533806 ZNF157P51786 506 aaPredicted RBP15.83■□□□□ 0.12
VPS28-216ENST00000533806 TMED8Q6PL24 325 aaPredicted RBP15.83■□□□□ 0.12
VPS28-216ENST00000533806 ARMC9Q7Z3E5 817 aa15.83■□□□□ 0.12
VPS28-216ENST00000533806 RASAL3Q86YV0 1011 aa15.83■□□□□ 0.12
VPS28-216ENST00000533806 DDX4Q9NQI0 724 aaKnown RBP15.83■□□□□ 0.12
VPS28-216ENST00000533806 ANGEL1Q9UNK9 670 aaKnown RBP15.83■□□□□ 0.12
VPS28-216ENST00000533806 ENTPD3O75355 529 aa15.82■□□□□ 0.12
VPS28-216ENST00000533806 NOGQ13253 232 aa15.82■□□□□ 0.12
VPS28-216ENST00000533806 PRKG1Q13976 671 aa15.82■□□□□ 0.12
VPS28-216ENST00000533806 NAA16Q6N069 864 aaPredicted RBP15.82■□□□□ 0.12
VPS28-216ENST00000533806 PAXIP1Q6ZW49 1069 aaPredicted RBP15.82■□□□□ 0.12
VPS28-216ENST00000533806 SH3BP5LQ7L8J4 393 aa15.82■□□□□ 0.12
VPS28-216ENST00000533806 HAUS7Q99871 368 aa15.82■□□□□ 0.12
VPS28-216ENST00000533806 IGHDP01880 384 aa15.81■□□□□ 0.12
VPS28-216ENST00000533806 RGS3P49796 1198 aa15.81■□□□□ 0.12
VPS28-216ENST00000533806 TTLL12Q14166 644 aaPredicted RBP15.81■□□□□ 0.12
VPS28-216ENST00000533806 TTF1Q15361 905 aaPredicted RBP15.81■□□□□ 0.12
VPS28-216ENST00000533806 ATRNL1Q5VV63 1379 aa15.81■□□□□ 0.12
VPS28-216ENST00000533806 GCC1Q96CN9 775 aa15.81■□□□□ 0.12
VPS28-216ENST00000533806 SALL3Q9BXA9 1300 aa15.81■□□□□ 0.12
VPS28-216ENST00000533806 BOLA2Q9H3K6 86 aa15.81■□□□□ 0.12
VPS28-216ENST00000533806 ECHDC1Q9NTX5 307 aa15.81■□□□□ 0.12
VPS28-216ENST00000533806 MYH2Q9UKX2 1941 aa15.8■□□□□ 0.12
VPS28-216ENST00000533806 IDH1O75874 414 aaKnown RBP15.8■□□□□ 0.12
VPS28-216ENST00000533806 HSPA1AP0DMV8 641 aaKnown RBP15.8■□□□□ 0.12
VPS28-216ENST00000533806 HSPA1BP0DMV9 641 aaKnown RBP15.8■□□□□ 0.12
VPS28-216ENST00000533806 MAP2K1Q02750 393 aaPredicted RBP15.8■□□□□ 0.12
VPS28-216ENST00000533806 MAP3K10Q02779 954 aa15.8■□□□□ 0.12
VPS28-216ENST00000533806 TCP10Q12799 353 aa15.8■□□□□ 0.12
VPS28-216ENST00000533806 GRM1Q13255 1194 aa15.8■□□□□ 0.12
VPS28-216ENST00000533806 SMC5Q8IY18 1101 aa15.8■□□□□ 0.12
VPS28-216ENST00000533806 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.8■□□□□ 0.121e-8■■□□□ 11.9
VPS28-216ENST00000533806 EDC3Q96F86 508 aaKnown RBP15.8■□□□□ 0.12
VPS28-216ENST00000533806 CLMNQ96JQ2 1002 aa15.8■□□□□ 0.12
VPS28-216ENST00000533806 TCRBV5S4A2TA0A5A2 114 aa15.79■□□□□ 0.12
VPS28-216ENST00000533806 GOLIM4O00461 696 aa15.79■□□□□ 0.12
VPS28-216ENST00000533806 CYP7A1P22680 504 aa15.79■□□□□ 0.12
VPS28-216ENST00000533806 IREB2P48200 963 aaKnown RBP15.79■□□□□ 0.12
VPS28-216ENST00000533806 KIF23Q02241 960 aaPredicted RBP15.79■□□□□ 0.12
VPS28-216ENST00000533806 MAP3K12Q12852 859 aa15.79■□□□□ 0.12
VPS28-216ENST00000533806 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.79■□□□□ 0.12
VPS28-216ENST00000533806 OTUD7AQ8TE49 926 aaPredicted RBP15.79■□□□□ 0.12
VPS28-216ENST00000533806 SH3RF3Q8TEJ3 882 aaPredicted RBP15.79■□□□□ 0.12
VPS28-216ENST00000533806 HOOK2Q96ED9 719 aa15.79■□□□□ 0.12
VPS28-216ENST00000533806 BCL11AQ9H165 835 aa15.79■□□□□ 0.12
VPS28-216ENST00000533806 PAG1Q9NWQ8 432 aa15.79■□□□□ 0.12
VPS28-216ENST00000533806 ZNF112Q9UJU3 913 aa15.79■□□□□ 0.12
VPS28-216ENST00000533806 DDTLA6NHG4 134 aaPredicted RBP15.78■□□□□ 0.12
VPS28-216ENST00000533806 BAG3O95817 575 aa15.78■□□□□ 0.12
VPS28-216ENST00000533806 SPRYD7Q5W111 196 aa15.78■□□□□ 0.12
VPS28-216ENST00000533806 ANKRD13AQ8IZ07 590 aa15.78■□□□□ 0.12
VPS28-216ENST00000533806 MAGEB6Q8N7X4 407 aa15.78■□□□□ 0.12
VPS28-216ENST00000533806 CSRNP1Q96S65 589 aa15.78■□□□□ 0.12
VPS28-216ENST00000533806 DNAJC2Q99543 621 aaKnown RBP15.78■□□□□ 0.12
VPS28-216ENST00000533806 RWDD1Q9H446 243 aaPredicted RBP15.78■□□□□ 0.12
VPS28-216ENST00000533806 AATFQ9NY61 560 aaKnown RBP eCLIP15.78■□□□□ 0.126e-6■■■■□ 25.6
VPS28-216ENST00000533806 TTC41PQ6P2S7 1318 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms