RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 UBN2Q6ZU65 1347 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 DTNBO60941 627 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 TRIM37O94972 964 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 CDK11BP21127 795 aaKnown RBP12.87□□□□□ -0.35
TRIM3-211ENST00000532542 GNAQP50148 359 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 PPARAQ07869 468 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 FAM173BQ6P4H8 233 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 PIBF1Q8WXW3 757 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 EYA3Q99504 573 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 PANK2Q9BZ23 570 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 AATFQ9NY61 560 aaKnown RBP eCLIP12.87□□□□□ -0.35
TRIM3-211ENST00000532542 APBA3O96018 575 aa12.86□□□□□ -0.35
TRIM3-211ENST00000532542 TSPY3P0CV98 308 aa12.86□□□□□ -0.35
TRIM3-211ENST00000532542 TSPY8P0CW00 308 aa12.86□□□□□ -0.35
TRIM3-211ENST00000532542 SLFNL1Q499Z3 407 aa12.86□□□□□ -0.35
TRIM3-211ENST00000532542 MRPS27Q92552 414 aaKnown RBP12.86□□□□□ -0.35
TRIM3-211ENST00000532542 ARHGEF1Q92888 912 aaKnown RBP12.86□□□□□ -0.35
TRIM3-211ENST00000532542 ZKSCAN3Q9BRR0 538 aa12.86□□□□□ -0.35
TRIM3-211ENST00000532542 ATP2B4P23634 1241 aa12.86□□□□□ -0.35
TRIM3-211ENST00000532542 DDIT3P35638 169 aa12.86□□□□□ -0.35
TRIM3-211ENST00000532542 TOB2Q14106 344 aaPredicted RBP12.86□□□□□ -0.35
TRIM3-211ENST00000532542 SF3B3Q15393 1217 aaKnown RBP12.86□□□□□ -0.35
TRIM3-211ENST00000532542 ZNF772Q68DY9 489 aaPredicted RBP12.86□□□□□ -0.35
TRIM3-211ENST00000532542 XDHP47989 1333 aa12.86□□□□□ -0.35
TRIM3-211ENST00000532542 KCNB2Q92953 911 aa12.86□□□□□ -0.35
TRIM3-211ENST00000532542 STRBPQ96SI9 672 aaKnown RBP12.86□□□□□ -0.35
TRIM3-211ENST00000532542 TMOD2Q9NZR1 351 aa12.86□□□□□ -0.35
TRIM3-211ENST00000532542 SPTLC2O15270 562 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 GADD45BO75293 160 aaPredicted RBP12.85□□□□□ -0.35
TRIM3-211ENST00000532542 NLRP5P59047 1200 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 NLGN1Q8N2Q7 840 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 LEO1Q8WVC0 666 aaPredicted RBP12.85□□□□□ -0.35
TRIM3-211ENST00000532542 SLC4A9Q96Q91 983 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 RBM28Q9NW13 759 aaKnown RBP12.85□□□□□ -0.35
TRIM3-211ENST00000532542 SEC63Q9UGP8 760 aaKnown RBP12.85□□□□□ -0.35
TRIM3-211ENST00000532542 STX8Q9UNK0 236 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 MINPP1Q9UNW1 487 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 CRACR2BQ8N4Y2 399 aaPredicted RBP12.85□□□□□ -0.35
TRIM3-211ENST00000532542 ANKRD20A12PQ8NF67 263 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 TBC1D22AQ8WUA7 517 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 DACH1Q9UI36 760 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 KDM3BQ7LBC6 1761 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 SERPINB2P05120 415 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 PCP11498 1178 aaKnown RBP12.85□□□□□ -0.35
TRIM3-211ENST00000532542 SLC4A8Q2Y0W8 1093 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 ZSCAN30Q86W11 494 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 TMEM63CQ9P1W3 806 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 SNAP23O00161 211 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 HLA-DOAP06340 250 aa12.85□□□□□ -0.35
TRIM3-211ENST00000532542 IKQ13123 557 aaPredicted RBP12.85□□□□□ -0.35
TRIM3-211ENST00000532542 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.85□□□□□ -0.35
TRIM3-211ENST00000532542 RPAP1Q9BWH6 1393 aaPredicted RBP12.84□□□□□ -0.35
TRIM3-211ENST00000532542 SLC27A3Q5K4L6 730 aa12.84□□□□□ -0.35
TRIM3-211ENST00000532542 NSUN7Q8NE18 718 aaKnown RBP12.84□□□□□ -0.35
TRIM3-211ENST00000532542 GPT2Q8TD30 523 aa12.84□□□□□ -0.35
TRIM3-211ENST00000532542 ARPP21Q9UBL0 812 aaPredicted RBP12.84□□□□□ -0.35
TRIM3-211ENST00000532542 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.84□□□□□ -0.35
TRIM3-211ENST00000532542 CARMIL3Q8ND23 1372 aa12.84□□□□□ -0.35
TRIM3-211ENST00000532542 VIRMAQ69YN4 1812 aaKnown RBP12.84□□□□□ -0.35
TRIM3-211ENST00000532542 DEXIO95424 95 aa12.84□□□□□ -0.35
TRIM3-211ENST00000532542 BMP15O95972 392 aa12.84□□□□□ -0.35
TRIM3-211ENST00000532542 GRAPQ13588 217 aa12.84□□□□□ -0.35
TRIM3-211ENST00000532542 STX1AQ16623 288 aa12.84□□□□□ -0.35
TRIM3-211ENST00000532542 CREBRFQ8IUR6 639 aa12.84□□□□□ -0.35
TRIM3-211ENST00000532542 GRAPLQ8TC17 118 aaPredicted RBP12.84□□□□□ -0.35
TRIM3-211ENST00000532542 SDR42E1Q8WUS8 393 aa12.84□□□□□ -0.35
TRIM3-211ENST00000532542 USP25Q9UHP3 1055 aa12.84□□□□□ -0.35
TRIM3-211ENST00000532542 ZMYM6O95789 1325 aa12.83□□□□□ -0.35
TRIM3-211ENST00000532542 BBOX1O75936 387 aa12.83□□□□□ -0.35
TRIM3-211ENST00000532542 TMED8Q6PL24 325 aaPredicted RBP12.83□□□□□ -0.35
TRIM3-211ENST00000532542 TMC4Q7Z404 712 aa12.83□□□□□ -0.35
TRIM3-211ENST00000532542 CELF1Q92879 486 aaKnown RBP12.83□□□□□ -0.35
TRIM3-211ENST00000532542 ZNF219Q9P2Y4 722 aaPredicted RBP12.83□□□□□ -0.35
TRIM3-211ENST00000532542 ZDHHC9Q9Y397 364 aa12.83□□□□□ -0.35
TRIM3-211ENST00000532542 ALDH1B1P30837 517 aa12.83□□□□□ -0.36
TRIM3-211ENST00000532542 HSPA1LP34931 641 aa12.83□□□□□ -0.36
TRIM3-211ENST00000532542 ZNF165P49910 485 aa12.83□□□□□ -0.36
TRIM3-211ENST00000532542 CCDC12Q8WUD4 166 aaPredicted RBP12.83□□□□□ -0.36
TRIM3-211ENST00000532542 CHAMP1Q96JM3 812 aa12.83□□□□□ -0.36
TRIM3-211ENST00000532542 SMTNL1A8MU46 457 aa12.83□□□□□ -0.36
TRIM3-211ENST00000532542 USP17L12C9JPN9 530 aa12.83□□□□□ -0.36
TRIM3-211ENST00000532542 USP17L21D6R901 530 aa12.83□□□□□ -0.36
TRIM3-211ENST00000532542 RIMBP2O15034 1052 aa12.83□□□□□ -0.36
TRIM3-211ENST00000532542 TEX11Q8IYF3 940 aa12.83□□□□□ -0.36
TRIM3-211ENST00000532542 MPHOSPH10O00566 681 aaKnown RBP12.82□□□□□ -0.36
TRIM3-211ENST00000532542 PRDM1O75626 825 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 ALX1Q15699 326 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 LCORLQ8N3X6 602 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 FAM200AQ8TCP9 573 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 ATP8A2Q9NTI2 1148 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 COL14A1Q05707 1796 aaKnown RBP12.82□□□□□ -0.36
TRIM3-211ENST00000532542 WDR19Q8NEZ3 1342 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 RGL2O15211 777 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 TPM1P09493 284 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 KLHL34Q8N239 644 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 RGPD5Q99666 1765 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 CCDC194A0A1B0GVG4 234 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 PDE6BP35913 854 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 SPC24Q8NBT2 197 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 FSD2A1L4K1 749 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms