RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 CDC42EP5Q6NZY7 148 aa16.13■□□□□ 0.17
CPSF1-204ENST00000529288 OTOP1Q7RTM1 612 aa16.13■□□□□ 0.17
CPSF1-204ENST00000529288 MS4A4AQ96JQ5 239 aa16.13■□□□□ 0.17
CPSF1-204ENST00000529288 ZNF341Q9BYN7 854 aa16.13■□□□□ 0.17
CPSF1-204ENST00000529288 COPRSQ9NQ92 184 aa16.13■□□□□ 0.17
CPSF1-204ENST00000529288 ABCF2Q9UG63 623 aa16.13■□□□□ 0.17
CPSF1-204ENST00000529288 TNNQ9UQP3 1299 aa16.13■□□□□ 0.17
CPSF1-204ENST00000529288 BCAR3O75815 825 aa16.12■□□□□ 0.17
CPSF1-204ENST00000529288 TFCP2Q12800 502 aa16.12■□□□□ 0.17
CPSF1-204ENST00000529288 CCDC102BQ68D86 513 aa16.12■□□□□ 0.17
CPSF1-204ENST00000529288 FAM151AQ8WW52 585 aa16.12■□□□□ 0.17
CPSF1-204ENST00000529288 ARHGAP45Q92619 1136 aa16.12■□□□□ 0.17
CPSF1-204ENST00000529288 NEUROD6Q96NK8 337 aa16.12■□□□□ 0.17
CPSF1-204ENST00000529288 EFCC1Q9HA90 598 aa16.12■□□□□ 0.17
CPSF1-204ENST00000529288 ZFYVE28Q9HCC9 887 aa16.12■□□□□ 0.17
CPSF1-204ENST00000529288 SNCAIPQ9Y6H5 919 aa16.12■□□□□ 0.17
CPSF1-204ENST00000529288 SPDYE5A6NIY4 337 aa16.11■□□□□ 0.17
CPSF1-204ENST00000529288 SEMA3EO15041 775 aa16.11■□□□□ 0.17
CPSF1-204ENST00000529288 WDHD1O75717 1129 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-204ENST00000529288 ECM2O94769 699 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-204ENST00000529288 NFIAQ12857 509 aa16.11■□□□□ 0.17
CPSF1-204ENST00000529288 ERO1BQ86YB8 467 aa16.11■□□□□ 0.17
CPSF1-204ENST00000529288 DZIP1Q86YF9 867 aaKnown RBP16.11■□□□□ 0.17
CPSF1-204ENST00000529288 FAM43AQ8N2R8 423 aa16.11■□□□□ 0.17
CPSF1-204ENST00000529288 A0A1B0GUL7 405 aa16.1■□□□□ 0.17
CPSF1-204ENST00000529288 CETPP11597 493 aa16.1■□□□□ 0.17
CPSF1-204ENST00000529288 INPP5BP32019 993 aa16.1■□□□□ 0.17
CPSF1-204ENST00000529288 GORABQ5T7V8 394 aa16.1■□□□□ 0.17
CPSF1-204ENST00000529288 XAGE2Q96GT9 111 aa16.1■□□□□ 0.17
CPSF1-204ENST00000529288 AKAP2Q9Y2D5 859 aa16.1■□□□□ 0.17
CPSF1-204ENST00000529288 ARAP2Q8WZ64 1704 aa16.09■□□□□ 0.17
CPSF1-204ENST00000529288 IRF6O14896 467 aa16.09■□□□□ 0.17
CPSF1-204ENST00000529288 GNAI2P04899 355 aa16.09■□□□□ 0.17
CPSF1-204ENST00000529288 TRIM27P14373 513 aa16.09■□□□□ 0.17
CPSF1-204ENST00000529288 SNAPC2Q13487 334 aa16.09■□□□□ 0.17
CPSF1-204ENST00000529288 ATF7IPQ6VMQ6 1270 aa16.09■□□□□ 0.17
CPSF1-204ENST00000529288 ZSCAN29Q8IWY8 852 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-204ENST00000529288 ZFPM1Q8IX07 1006 aa16.09■□□□□ 0.17
CPSF1-204ENST00000529288 ZGPATQ8N5A5 531 aaKnown RBP16.09■□□□□ 0.17
CPSF1-204ENST00000529288 FAM198AQ9UFP1 575 aa16.09■□□□□ 0.17
CPSF1-204ENST00000529288 PTPN22Q9Y2R2 807 aa16.09■□□□□ 0.17
CPSF1-204ENST00000529288 BTBD19C9JJ37 291 aa16.08■□□□□ 0.16
CPSF1-204ENST00000529288 HNRNPUQ00839 825 aaKnown RBP eCLIP16.08■□□□□ 0.16
CPSF1-204ENST00000529288 G3BP1Q13283 466 aaKnown RBP eCLIP16.08■□□□□ 0.16
CPSF1-204ENST00000529288 PPIL2Q13356 520 aa16.08■□□□□ 0.16
CPSF1-204ENST00000529288 RASGRF1Q13972 1273 aa16.08■□□□□ 0.16
CPSF1-204ENST00000529288 MVPQ14764 893 aaKnown RBP16.08■□□□□ 0.16
CPSF1-204ENST00000529288 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-204ENST00000529288 SALL1Q9NSC2 1324 aa16.08■□□□□ 0.16
CPSF1-204ENST00000529288 RGS3P49796 1198 aa16.07■□□□□ 0.16
CPSF1-204ENST00000529288 PICALMQ13492 652 aa16.07■□□□□ 0.16
CPSF1-204ENST00000529288 ARHGEF6Q15052 776 aa16.07■□□□□ 0.16
CPSF1-204ENST00000529288 SPTY2D1Q68D10 685 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-204ENST00000529288 RPAP1Q9BWH6 1393 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-204ENST00000529288 CAP1Q01518 475 aa16.06■□□□□ 0.16
CPSF1-204ENST00000529288 PPATQ06203 517 aa16.06■□□□□ 0.16
CPSF1-204ENST00000529288 ZKSCAN2Q63HK3 967 aa16.06■□□□□ 0.16
CPSF1-204ENST00000529288 ERICH6Q7L0X2 663 aa16.06■□□□□ 0.16
CPSF1-204ENST00000529288 SLF2Q8IX21 1173 aa16.06■□□□□ 0.16
CPSF1-204ENST00000529288 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-204ENST00000529288 PNMA6EA0A0J9YXQ4 647 aa16.05■□□□□ 0.16
CPSF1-204ENST00000529288 MYCP01106 439 aaPredicted RBP16.05■□□□□ 0.16
CPSF1-204ENST00000529288 BTDP43251 543 aa16.05■□□□□ 0.16
CPSF1-204ENST00000529288 OS9Q13438 667 aaPredicted RBP16.05■□□□□ 0.16
CPSF1-204ENST00000529288 MTX1Q13505 466 aa16.05■□□□□ 0.16
CPSF1-204ENST00000529288 KIF22Q14807 665 aa16.05■□□□□ 0.16
CPSF1-204ENST00000529288 MIER1Q8N108 512 aa16.05■□□□□ 0.16
CPSF1-204ENST00000529288 TMEM57Q8N5G2 664 aa16.05■□□□□ 0.16
CPSF1-204ENST00000529288 OTOFQ9HC10 1997 aa16.04■□□□□ 0.16
CPSF1-204ENST00000529288 POTEFA5A3E0 1075 aa16.04■□□□□ 0.16
CPSF1-204ENST00000529288 MECOMQ03112 1051 aa16.04■□□□□ 0.16
CPSF1-204ENST00000529288 TBC1D9Q6ZT07 1266 aa16.04■□□□□ 0.16
CPSF1-204ENST00000529288 RAI14Q9P0K7 980 aa16.04■□□□□ 0.16
CPSF1-204ENST00000529288 HMG20BQ9P0W2 317 aa16.04■□□□□ 0.16
CPSF1-204ENST00000529288 ZNF112Q9UJU3 913 aa16.04■□□□□ 0.16
CPSF1-204ENST00000529288 PDHXO00330 501 aa16.03■□□□□ 0.16
CPSF1-204ENST00000529288 TLR2O60603 784 aa16.03■□□□□ 0.16
CPSF1-204ENST00000529288 ENTPD3O75355 529 aa16.03■□□□□ 0.16
CPSF1-204ENST00000529288 SLURP2P0DP57 97 aa16.03■□□□□ 0.16
CPSF1-204ENST00000529288 PI16Q6UXB8 463 aa16.03■□□□□ 0.16
CPSF1-204ENST00000529288 SPATA5Q8NB90 893 aa16.03■□□□□ 0.16
CPSF1-204ENST00000529288 ARHGAP39Q9C0H5 1083 aa16.03■□□□□ 0.16
CPSF1-204ENST00000529288 C1orf115Q9H7X2 142 aa16.03■□□□□ 0.16
CPSF1-204ENST00000529288 PICK1Q9NRD5 415 aa16.03■□□□□ 0.16
CPSF1-204ENST00000529288 CPA4Q9UI42 421 aa16.03■□□□□ 0.16
CPSF1-204ENST00000529288 PTCH2Q9Y6C5 1203 aa16.03■□□□□ 0.16
CPSF1-204ENST00000529288 MROH7-TTC4A0A0A0MT08 1334 aa16.02■□□□□ 0.16
CPSF1-204ENST00000529288 GAKO14976 1311 aa16.02■□□□□ 0.16
CPSF1-204ENST00000529288 SLC9C1Q4G0N8 1177 aa16.02■□□□□ 0.16
CPSF1-204ENST00000529288 SH3BP5LQ7L8J4 393 aa16.02■□□□□ 0.16
CPSF1-204ENST00000529288 FTSJ3Q8IY81 847 aaKnown RBP16.02■□□□□ 0.16
CPSF1-204ENST00000529288 TMEM106CQ9BVX2 250 aa16.02■□□□□ 0.16
CPSF1-204ENST00000529288 IDI2Q9BXS1 227 aa16.02■□□□□ 0.16
CPSF1-204ENST00000529288 DDX4Q9NQI0 724 aaKnown RBP16.02■□□□□ 0.16
CPSF1-204ENST00000529288 DDTLA6NHG4 134 aaPredicted RBP16.01■□□□□ 0.15
CPSF1-204ENST00000529288 LDHCP07864 332 aa16.01■□□□□ 0.15
CPSF1-204ENST00000529288 GSTO1P78417 241 aa16.01■□□□□ 0.15
CPSF1-204ENST00000529288 TTC39AQ5SRH9 613 aa16.01■□□□□ 0.15
CPSF1-204ENST00000529288 NOL9Q5SY16 702 aaKnown RBP16.01■□□□□ 0.15
CPSF1-204ENST00000529288 DIEXFQ68CQ4 756 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms