RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 QTRT2Q9H974 415 aaKnown RBP18.66■□□□□ 0.58
USH1C-204ENST00000526313 LY9Q9HBG7 655 aa18.66■□□□□ 0.58
USH1C-204ENST00000526313 ABCF2Q9UG63 623 aa18.66■□□□□ 0.58
USH1C-204ENST00000526313 ANAPC4Q9UJX5 808 aa18.66■□□□□ 0.58
USH1C-204ENST00000526313 RCOR1Q9UKL0 485 aa18.66■□□□□ 0.58
USH1C-204ENST00000526313 KLRK1P26718 216 aa18.65■□□□□ 0.58
USH1C-204ENST00000526313 CTDSPL2Q05D32 466 aa18.65■□□□□ 0.58
USH1C-204ENST00000526313 TMED8Q6PL24 325 aaPredicted RBP18.65■□□□□ 0.58
USH1C-204ENST00000526313 CCDC24Q8N4L8 307 aa18.65■□□□□ 0.58
USH1C-204ENST00000526313 MIGA1Q8NAN2 632 aa18.65■□□□□ 0.58
USH1C-204ENST00000526313 ANP32BQ92688 251 aaKnown RBP18.65■□□□□ 0.58
USH1C-204ENST00000526313 PGBD1Q96JS3 809 aa18.65■□□□□ 0.58
USH1C-204ENST00000526313 INCENPQ9NQS7 918 aa18.65■□□□□ 0.58
USH1C-204ENST00000526313 RAI14Q9P0K7 980 aa18.65■□□□□ 0.58
USH1C-204ENST00000526313 ZSWIM5Q9P217 1185 aa18.65■□□□□ 0.58
USH1C-204ENST00000526313 MAGEB6P1A0A0J9YX57 407 aa18.65■□□□□ 0.58
USH1C-204ENST00000526313 HIBADHP31937 336 aaKnown RBP18.65■□□□□ 0.58
USH1C-204ENST00000526313 SLC27A3Q5K4L6 730 aa18.65■□□□□ 0.58
USH1C-204ENST00000526313 APOA5Q6Q788 366 aa18.65■□□□□ 0.58
USH1C-204ENST00000526313 ILDR1Q86SU0 546 aaPredicted RBP18.65■□□□□ 0.58
USH1C-204ENST00000526313 MFSD6Q6ZSS7 791 aa18.64■□□□□ 0.57
USH1C-204ENST00000526313 FBXO18Q8NFZ0 1043 aa18.64■□□□□ 0.57
USH1C-204ENST00000526313 SENP2Q9HC62 589 aa18.64■□□□□ 0.57
USH1C-204ENST00000526313 ORC3Q9UBD5 711 aaPredicted RBP18.64■□□□□ 0.57
USH1C-204ENST00000526313 NID2Q14112 1375 aa18.64■□□□□ 0.57
USH1C-204ENST00000526313 LIG1P18858 919 aa18.64■□□□□ 0.57
USH1C-204ENST00000526313 TDO2P48775 406 aa18.64■□□□□ 0.57
USH1C-204ENST00000526313 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.63■□□□□ 0.57
USH1C-204ENST00000526313 KDM4AO75164 1064 aa18.63■□□□□ 0.57
USH1C-204ENST00000526313 GRAPQ13588 217 aa18.63■□□□□ 0.57
USH1C-204ENST00000526313 GRAPLQ8TC17 118 aaPredicted RBP18.63■□□□□ 0.57
USH1C-204ENST00000526313 CPLX1O14810 134 aa18.62■□□□□ 0.57
USH1C-204ENST00000526313 IGSF3O75054 1194 aa18.62■□□□□ 0.57
USH1C-204ENST00000526313 NTRK3Q16288 839 aa18.62■□□□□ 0.57
USH1C-204ENST00000526313 UVSSAQ2YD98 709 aa18.62■□□□□ 0.57
USH1C-204ENST00000526313 TMEM67Q5HYA8 995 aa18.62■□□□□ 0.57
USH1C-204ENST00000526313 GIMAP6Q6P9H5 292 aa18.62■□□□□ 0.57
USH1C-204ENST00000526313 NSUN4Q96CB9 384 aaKnown RBP18.62■□□□□ 0.57
USH1C-204ENST00000526313 ZNF396Q96N95 335 aaPredicted RBP18.62■□□□□ 0.57
USH1C-204ENST00000526313 BRIP1Q9BX63 1249 aa18.62■□□□□ 0.57
USH1C-204ENST00000526313 RNF41Q9H4P4 317 aaPredicted RBP18.62■□□□□ 0.57
USH1C-204ENST00000526313 FAM217BQ9NTX9 383 aaPredicted RBP18.62■□□□□ 0.57
USH1C-204ENST00000526313 GYS1P13807 737 aa18.62■□□□□ 0.57
USH1C-204ENST00000526313 METAP2P50579 478 aaKnown RBP eCLIP18.62■□□□□ 0.57
USH1C-204ENST00000526313 PPARAQ07869 468 aa18.62■□□□□ 0.57
USH1C-204ENST00000526313 CNBD1Q8NA66 436 aa18.62■□□□□ 0.57
USH1C-204ENST00000526313 C8orf76Q96K31 380 aa18.62■□□□□ 0.57
USH1C-204ENST00000526313 MYH13Q9UKX3 1938 aa18.61■□□□□ 0.57
USH1C-204ENST00000526313 PPFIA3O75145 1194 aa18.61■□□□□ 0.57
USH1C-204ENST00000526313 PRR5LQ6MZQ0 368 aa18.61■□□□□ 0.57
USH1C-204ENST00000526313 LEMD3Q9Y2U8 911 aa18.61■□□□□ 0.57
USH1C-204ENST00000526313 IFIT3O14879 490 aaKnown RBP18.61■□□□□ 0.57
USH1C-204ENST00000526313 ZBTB43O43298 467 aa18.61■□□□□ 0.57
USH1C-204ENST00000526313 CDKL5O76039 1030 aa18.61■□□□□ 0.57
USH1C-204ENST00000526313 FGRP09769 529 aa18.61■□□□□ 0.57
USH1C-204ENST00000526313 CDC27P30260 824 aa18.61■□□□□ 0.57
USH1C-204ENST00000526313 CRY2Q49AN0 593 aa18.61■□□□□ 0.57
USH1C-204ENST00000526313 RBM43Q6ZSC3 357 aaKnown RBP18.61■□□□□ 0.57
USH1C-204ENST00000526313 C15orf52Q6ZUT6 534 aaKnown RBP18.61■□□□□ 0.57
USH1C-204ENST00000526313 RAB11FIP4Q86YS3 637 aa18.61■□□□□ 0.57
USH1C-204ENST00000526313 USP28Q96RU2 1077 aa18.61■□□□□ 0.57
USH1C-204ENST00000526313 DDX19AQ9NUU7 478 aaKnown RBP18.61■□□□□ 0.57
USH1C-204ENST00000526313 TFCP2L1Q9NZI6 479 aa18.61■□□□□ 0.57
USH1C-204ENST00000526313 GOLGA6L4A6NEF3 574 aa18.6■□□□□ 0.57
USH1C-204ENST00000526313 FOSBP53539 338 aa18.6■□□□□ 0.57
USH1C-204ENST00000526313 GUCY1B3Q02153 619 aa18.6■□□□□ 0.57
USH1C-204ENST00000526313 TXNRD3Q86VQ6 643 aa18.6■□□□□ 0.57
USH1C-204ENST00000526313 SDR42E1Q8WUS8 393 aa18.6■□□□□ 0.57
USH1C-204ENST00000526313 RRAGDQ9NQL2 400 aaPredicted RBP18.6■□□□□ 0.57
USH1C-204ENST00000526313 BRWD3Q6RI45 1802 aa18.6■□□□□ 0.57
USH1C-204ENST00000526313 RCAN1P53805 252 aa18.59■□□□□ 0.57
USH1C-204ENST00000526313 DYNLL1P63167 89 aaKnown RBP18.59■□□□□ 0.57
USH1C-204ENST00000526313 MECOMQ03112 1051 aa18.59■□□□□ 0.57
USH1C-204ENST00000526313 TPRNQ4KMQ1 711 aa18.59■□□□□ 0.57
USH1C-204ENST00000526313 RNF214Q8ND24 703 aa18.59■□□□□ 0.57
USH1C-204ENST00000526313 CPLX2Q6PUV4 134 aaKnown RBP18.59■□□□□ 0.57
USH1C-204ENST00000526313 KRT27Q7Z3Y8 459 aa18.59■□□□□ 0.57
USH1C-204ENST00000526313 TMTC2Q8N394 836 aa18.59■□□□□ 0.57
USH1C-204ENST00000526313 NUP62CLQ9H1M0 184 aa18.59■□□□□ 0.57
USH1C-204ENST00000526313 DACT1Q9NYF0 836 aa18.59■□□□□ 0.57
USH1C-204ENST00000526313 RTEL1Q9NZ71 1219 aa18.59■□□□□ 0.57
USH1C-204ENST00000526313 HS1BP3Q53T59 392 aa18.58■□□□□ 0.57
USH1C-204ENST00000526313 OTUD7BQ6GQQ9 843 aa18.58■□□□□ 0.57
USH1C-204ENST00000526313 BRAPQ7Z569 592 aa18.58■□□□□ 0.57
USH1C-204ENST00000526313 RTN4Q9NQC3 1192 aaKnown RBP18.58■□□□□ 0.57
USH1C-204ENST00000526313 SLC12A7Q9Y666 1083 aa18.58■□□□□ 0.57
USH1C-204ENST00000526313 MAST2Q6P0Q8 1798 aa18.58■□□□□ 0.56
USH1C-204ENST00000526313 PCP11498 1178 aaKnown RBP18.58■□□□□ 0.56
USH1C-204ENST00000526313 NFXL1Q6ZNB6 911 aa18.58■□□□□ 0.56
USH1C-204ENST00000526313 TRIM44Q96DX7 344 aaPredicted RBP18.58■□□□□ 0.56
USH1C-204ENST00000526313 CLSTN2Q9H4D0 955 aa18.58■□□□□ 0.56
USH1C-204ENST00000526313 STK36Q9NRP7 1315 aa18.57■□□□□ 0.56
USH1C-204ENST00000526313 KIAA1551Q9HCM1 1747 aa18.57■□□□□ 0.56
USH1C-204ENST00000526313 GOLGA8AA7E2F4 631 aa18.57■□□□□ 0.56
USH1C-204ENST00000526313 NPHP1O15259 732 aa18.57■□□□□ 0.56
USH1C-204ENST00000526313 SART3Q15020 963 aaKnown RBP18.57■□□□□ 0.56
USH1C-204ENST00000526313 MICU3Q86XE3 530 aa18.57■□□□□ 0.56
USH1C-204ENST00000526313 TDRD7Q8NHU6 1098 aaKnown RBP18.57■□□□□ 0.56
USH1C-204ENST00000526313 FTOQ9C0B1 505 aaKnown RBP eCLIP18.57■□□□□ 0.56
USH1C-204ENST00000526313 XDHP47989 1333 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms