RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 YBX3P16989 372 aaKnown RBP eCLIP6.98□□□□□ -1.295e-9■□□□□ 9.1
USP48-211ENST00000526044 SLC51AQ86UW1 340 aa6.98□□□□□ -1.29
USP48-211ENST00000526044 DDX54Q8TDD1 881 aaKnown RBP6.98□□□□□ -1.29
USP48-211ENST00000526044 COL17A1Q9UMD9 1497 aaPredicted RBP6.98□□□□□ -1.29
USP48-211ENST00000526044 TNIKQ9UKE5 1360 aa6.97□□□□□ -1.29
USP48-211ENST00000526044 ADAM11O75078 769 aa6.97□□□□□ -1.29
USP48-211ENST00000526044 NOS3P29474 1203 aa6.97□□□□□ -1.29
USP48-211ENST00000526044 IREB2P48200 963 aaKnown RBP6.97□□□□□ -1.29
USP48-211ENST00000526044 NLRP12P59046 1061 aa6.97□□□□□ -1.29
USP48-211ENST00000526044 GSTM4Q03013 218 aa6.97□□□□□ -1.29
USP48-211ENST00000526044 NUP160Q12769 1436 aa6.97□□□□□ -1.29
USP48-211ENST00000526044 ACAD11Q709F0 780 aa6.97□□□□□ -1.29
USP48-211ENST00000526044 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.97□□□□□ -1.29
USP48-211ENST00000526044 FOXD4L4Q8WXT5 416 aaPredicted RBP6.97□□□□□ -1.29
USP48-211ENST00000526044 OSBPL7Q9BZF2 842 aa6.97□□□□□ -1.29
USP48-211ENST00000526044 CTTNBP2Q8WZ74 1663 aa6.96□□□□□ -1.29
USP48-211ENST00000526044 KIAA0586Q9BVV6 1533 aa6.96□□□□□ -1.29
USP48-211ENST00000526044 CEP170Q5SW79 1584 aa6.96□□□□□ -1.29
USP48-211ENST00000526044 KRTAP4-8A0A0G2JLE6 195 aa6.96□□□□□ -1.3
USP48-211ENST00000526044 ALX3O95076 343 aa6.96□□□□□ -1.3
USP48-211ENST00000526044 WISP1O95388 367 aa6.96□□□□□ -1.3
USP48-211ENST00000526044 B3GALT4O96024 378 aa6.96□□□□□ -1.3
USP48-211ENST00000526044 TRIM26Q12899 539 aaPredicted RBP6.96□□□□□ -1.3
USP48-211ENST00000526044 AKAP2Q9Y2D5 859 aa6.96□□□□□ -1.3
USP48-211ENST00000526044 CYP11A1P05108 521 aa6.95□□□□□ -1.3
USP48-211ENST00000526044 GNA15P30679 374 aa6.95□□□□□ -1.3
USP48-211ENST00000526044 GSTT1P30711 240 aa6.95□□□□□ -1.3
USP48-211ENST00000526044 IRAK1P51617 712 aa6.95□□□□□ -1.3
USP48-211ENST00000526044 KIAA1211Q6ZU35 1233 aa6.95□□□□□ -1.3
USP48-211ENST00000526044 UBASH3BQ8TF42 649 aa6.95□□□□□ -1.3
USP48-211ENST00000526044 DUSP9Q99956 384 aaKnown RBP6.95□□□□□ -1.3
USP48-211ENST00000526044 C12orf49Q9H741 205 aa6.95□□□□□ -1.3
USP48-211ENST00000526044 FAAP100Q0VG06 881 aa6.94□□□□□ -1.3
USP48-211ENST00000526044 PRR23CQ6ZRP0 262 aa6.94□□□□□ -1.3
USP48-211ENST00000526044 FBXO33Q7Z6M2 555 aa6.94□□□□□ -1.3
USP48-211ENST00000526044 AGGF1Q8N302 714 aaeCLIP6.94□□□□□ -1.3
USP48-211ENST00000526044 USP26Q9BXU7 913 aa6.94□□□□□ -1.3
USP48-211ENST00000526044 FAM8A1Q9UBU6 413 aa6.94□□□□□ -1.3
USP48-211ENST00000526044 IQGAP2Q13576 1575 aa6.94□□□□□ -1.3
USP48-211ENST00000526044 MEGF11A6BM72 1044 aa6.93□□□□□ -1.3
USP48-211ENST00000526044 GLB1P16278 677 aa6.93□□□□□ -1.3
USP48-211ENST00000526044 EIF4BP23588 611 aaKnown RBP6.93□□□□□ -1.3
USP48-211ENST00000526044 PPP2R3AQ06190 1150 aa6.93□□□□□ -1.3
USP48-211ENST00000526044 POU4F3Q15319 338 aa6.93□□□□□ -1.3
USP48-211ENST00000526044 Q6ZS46 218 aa6.93□□□□□ -1.3
USP48-211ENST00000526044 C3orf58Q8NDZ4 430 aa6.93□□□□□ -1.3
USP48-211ENST00000526044 RUSC1Q9BVN2 902 aa6.93□□□□□ -1.3
USP48-211ENST00000526044 CEP41Q9BYV8 373 aa6.93□□□□□ -1.3
USP48-211ENST00000526044 RNF208Q9H0X6 261 aa6.93□□□□□ -1.3
USP48-211ENST00000526044 TMEM39AQ9NV64 488 aa6.93□□□□□ -1.3
USP48-211ENST00000526044 AK5Q9Y6K8 562 aa6.93□□□□□ -1.3
USP48-211ENST00000526044 LOC100289279A0A1B0GTE1 492 aa6.92□□□□□ -1.3
USP48-211ENST00000526044 SSTR4P31391 388 aa6.92□□□□□ -1.3
USP48-211ENST00000526044 ZNF157P51786 506 aaPredicted RBP6.92□□□□□ -1.3
USP48-211ENST00000526044 MFAP1P55081 439 aaKnown RBP6.92□□□□□ -1.3
USP48-211ENST00000526044 XPCQ01831 940 aaPredicted RBP6.92□□□□□ -1.3
USP48-211ENST00000526044 AP3B2Q13367 1082 aa6.92□□□□□ -1.3
USP48-211ENST00000526044 DZIP1LQ8IYY4 767 aaKnown RBP6.92□□□□□ -1.3
USP48-211ENST00000526044 MEGF10Q96KG7 1140 aa6.92□□□□□ -1.3
USP48-211ENST00000526044 NRSN2Q9GZP1 204 aa6.92□□□□□ -1.3
USP48-211ENST00000526044 PARP2Q9UGN5 583 aa6.92□□□□□ -1.3
USP48-211ENST00000526044 GPN3Q9UHW5 284 aaPredicted RBP6.92□□□□□ -1.3
USP48-211ENST00000526044 PPM1HQ9ULR3 514 aa6.92□□□□□ -1.3
USP48-211ENST00000526044 CARMIL2Q6F5E8 1435 aa6.92□□□□□ -1.3
USP48-211ENST00000526044 PRG4Q92954 1404 aaPredicted RBP6.92□□□□□ -1.3
USP48-211ENST00000526044 CLASP1Q7Z460 1538 aa6.91□□□□□ -1.3
USP48-211ENST00000526044 USP17L7P0C7H9 530 aa6.91□□□□□ -1.3
USP48-211ENST00000526044 MAOBP27338 520 aa6.91□□□□□ -1.3
USP48-211ENST00000526044 EXOSC6Q5RKV6 272 aaKnown RBP6.91□□□□□ -1.3
USP48-211ENST00000526044 HP1BP3Q5SSJ5 553 aaPredicted RBP6.91□□□□□ -1.3
USP48-211ENST00000526044 NUTM2GQ5VZR2 741 aa6.91□□□□□ -1.3
USP48-211ENST00000526044 FMNL2Q96PY5 1086 aa6.91□□□□□ -1.3
USP48-211ENST00000526044 CORO1BQ9BR76 489 aa6.91□□□□□ -1.3
USP48-211ENST00000526044 TRIM56Q9BRZ2 755 aaKnown RBP6.91□□□□□ -1.3
USP48-211ENST00000526044 RNF19AQ9NV58 838 aa6.91□□□□□ -1.3
USP48-211ENST00000526044 FSTP19883 344 aa6.9□□□□□ -1.3
USP48-211ENST00000526044 DAB2P98082 770 aa6.9□□□□□ -1.3
USP48-211ENST00000526044 PSMD2Q13200 908 aa6.9□□□□□ -1.3
USP48-211ENST00000526044 ANKRD34AQ69YU3 496 aa6.9□□□□□ -1.3
USP48-211ENST00000526044 ANKRD24Q8TF21 1146 aa6.9□□□□□ -1.3
USP48-211ENST00000526044 UBL7Q96S82 380 aaPredicted RBP6.9□□□□□ -1.3
USP48-211ENST00000526044 BCL2L13Q9BXK5 485 aa6.9□□□□□ -1.3
USP48-211ENST00000526044 TMPRSS13Q9BYE2 586 aa6.9□□□□□ -1.3
USP48-211ENST00000526044 CEP44Q9C0F1 390 aa6.9□□□□□ -1.3
USP48-211ENST00000526044 CYP4F12Q9HCS2 524 aa6.9□□□□□ -1.3
USP48-211ENST00000526044 TTBK1Q5TCY1 1321 aaPredicted RBP6.9□□□□□ -1.3
USP48-211ENST00000526044 CLIP1P30622 1438 aa6.9□□□□□ -1.31
USP48-211ENST00000526044 UGGT2Q9NYU1 1516 aa6.9□□□□□ -1.31
USP48-211ENST00000526044 SART1O43290 800 aaKnown RBP6.89□□□□□ -1.31
USP48-211ENST00000526044 DLGAP3O95886 979 aa6.89□□□□□ -1.31
USP48-211ENST00000526044 TAGLNQ01995 201 aaKnown RBP6.89□□□□□ -1.31
USP48-211ENST00000526044 ZNF326Q5BKZ1 582 aaKnown RBP6.89□□□□□ -1.31
USP48-211ENST00000526044 FDX2Q6P4F2 183 aa6.89□□□□□ -1.31
USP48-211ENST00000526044 TMC4Q7Z404 712 aa6.89□□□□□ -1.31
USP48-211ENST00000526044 SMG8Q8ND04 991 aaKnown RBP6.89□□□□□ -1.31
USP48-211ENST00000526044 NECAB3Q96P71 396 aaPredicted RBP6.89□□□□□ -1.31
USP48-211ENST00000526044 CEP162Q5TB80 1403 aa6.89□□□□□ -1.31
USP48-211ENST00000526044 SHROOM2Q13796 1616 aa6.89□□□□□ -1.31
USP48-211ENST00000526044 GSC2O15499 205 aa6.88□□□□□ -1.31
USP48-211ENST00000526044 ITGAEP38570 1179 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms