RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 MAP1SQ66K74 1059 aaPredicted RBP10.9□□□□□ -0.66
LSM1-202ENST00000520286 NLGN1Q8N2Q7 840 aa10.9□□□□□ -0.66
LSM1-202ENST00000520286 FAM169BQ8N8A8 192 aa10.9□□□□□ -0.66
LSM1-202ENST00000520286 GSTP1P09211 210 aaKnown RBP10.89□□□□□ -0.67
LSM1-202ENST00000520286 CDC25BP30305 580 aa10.89□□□□□ -0.67
LSM1-202ENST00000520286 RPL6Q02878 288 aaKnown RBP10.89□□□□□ -0.67
LSM1-202ENST00000520286 GSTM4Q03013 218 aa10.89□□□□□ -0.67
LSM1-202ENST00000520286 CLCQ05315 142 aa10.89□□□□□ -0.67
LSM1-202ENST00000520286 MPRIPQ6WCQ1 1025 aa10.89□□□□□ -0.67
LSM1-202ENST00000520286 IL22RA1Q8N6P7 574 aa10.89□□□□□ -0.67
LSM1-202ENST00000520286 SOX17Q9H6I2 414 aaPredicted RBP10.89□□□□□ -0.67
LSM1-202ENST00000520286 ZNRF3Q9ULT6 936 aa10.89□□□□□ -0.67
LSM1-202ENST00000520286 HGSNATQ68CP4 663 aa10.88□□□□□ -0.67
LSM1-202ENST00000520286 KANK3Q6NY19 840 aa10.88□□□□□ -0.67
LSM1-202ENST00000520286 GPR161Q8N6U8 529 aaKnown RBP10.88□□□□□ -0.67
LSM1-202ENST00000520286 OR6P1Q8NGX9 317 aa10.88□□□□□ -0.67
LSM1-202ENST00000520286 SLC7A3Q8WY07 619 aa10.88□□□□□ -0.67
LSM1-202ENST00000520286 MRPL42Q9Y6G3 142 aaKnown RBP10.88□□□□□ -0.67
LSM1-202ENST00000520286 IMPDH2P12268 514 aa10.87□□□□□ -0.67
LSM1-202ENST00000520286 GRIK5Q16478 980 aa10.87□□□□□ -0.67
LSM1-202ENST00000520286 ZNF662Q6ZS27 426 aa10.87□□□□□ -0.67
LSM1-202ENST00000520286 KCNB2Q92953 911 aa10.87□□□□□ -0.67
LSM1-202ENST00000520286 JPH1Q9HDC5 661 aaPredicted RBP10.87□□□□□ -0.67
LSM1-202ENST00000520286 SNTG2Q9NY99 539 aa10.87□□□□□ -0.67
LSM1-202ENST00000520286 PPME1Q9Y570 386 aa10.87□□□□□ -0.67
LSM1-202ENST00000520286 ARL4DP49703 201 aa10.86□□□□□ -0.67
LSM1-202ENST00000520286 EGFLAMQ63HQ2 1017 aa10.86□□□□□ -0.67
LSM1-202ENST00000520286 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.86□□□□□ -0.67
LSM1-202ENST00000520286 GOLGA6L1Q8N7Z2 621 aa10.86□□□□□ -0.67
LSM1-202ENST00000520286 DEPDC7Q96QD5 511 aa10.86□□□□□ -0.67
LSM1-202ENST00000520286 ACTR10Q9NZ32 417 aa10.86□□□□□ -0.67
LSM1-202ENST00000520286 NXF1Q9UBU9 619 aaKnown RBP10.86□□□□□ -0.67
LSM1-202ENST00000520286 STARD13Q9Y3M8 1113 aa10.86□□□□□ -0.67
LSM1-202ENST00000520286 PCDHB14Q9Y5E9 798 aa10.86□□□□□ -0.67
LSM1-202ENST00000520286 IGF1RP08069 1367 aa10.86□□□□□ -0.67
LSM1-202ENST00000520286 EIF4EBP3O60516 100 aaPredicted RBP10.85□□□□□ -0.67
LSM1-202ENST00000520286 PIP4K2BP78356 416 aa10.85□□□□□ -0.67
LSM1-202ENST00000520286 C19orf57Q0VDD7 668 aa10.85□□□□□ -0.67
LSM1-202ENST00000520286 RASA3Q14644 834 aa10.85□□□□□ -0.67
LSM1-202ENST00000520286 FAM117BQ6P1L5 589 aa10.85□□□□□ -0.67
LSM1-202ENST00000520286 TXNDC11Q6PKC3 985 aa10.85□□□□□ -0.67
LSM1-202ENST00000520286 SLCO4C1Q6ZQN7 724 aa10.85□□□□□ -0.67
LSM1-202ENST00000520286 ZC3H12CQ9C0D7 883 aaKnown RBP10.85□□□□□ -0.67
LSM1-202ENST00000520286 EHMT1Q9H9B1 1298 aa10.85□□□□□ -0.67
LSM1-202ENST00000520286 POLR3KQ9Y2Y1 108 aaPredicted RBP10.85□□□□□ -0.67
LSM1-202ENST00000520286 CCDC85CA6NKD9 419 aa10.84□□□□□ -0.67
LSM1-202ENST00000520286 LINC01387J3KSC0 135 aa10.84□□□□□ -0.67
LSM1-202ENST00000520286 GRIN3BO60391 1043 aa10.84□□□□□ -0.67
LSM1-202ENST00000520286 CYP11A1P05108 521 aa10.84□□□□□ -0.67
LSM1-202ENST00000520286 Q6ZNB5 142 aa10.84□□□□□ -0.67
LSM1-202ENST00000520286 LSRQ86X29 649 aaPredicted RBP10.84□□□□□ -0.67
LSM1-202ENST00000520286 CELF2-AS1Q8N7Q2 184 aa10.84□□□□□ -0.67
LSM1-202ENST00000520286 RBBP8NLQ8NC74 664 aaPredicted RBP10.84□□□□□ -0.67
LSM1-202ENST00000520286 WNT8BQ93098 351 aa10.84□□□□□ -0.67
LSM1-202ENST00000520286 ACSBG1Q96GR2 724 aa10.84□□□□□ -0.67
LSM1-202ENST00000520286 CACNA2D2Q9NY47 1150 aa10.84□□□□□ -0.67
LSM1-202ENST00000520286 GDF2Q9UK05 429 aaPredicted RBP10.84□□□□□ -0.67
LSM1-202ENST00000520286 PCDHA4Q9UN74 947 aa10.84□□□□□ -0.67
LSM1-202ENST00000520286 SBNO2Q9Y2G9 1366 aa10.83□□□□□ -0.68
LSM1-202ENST00000520286 PPM1GO15355 546 aaPredicted RBP10.83□□□□□ -0.68
LSM1-202ENST00000520286 ATE1O95260 518 aa10.83□□□□□ -0.68
LSM1-202ENST00000520286 BAG6P46379 1132 aa10.83□□□□□ -0.68
LSM1-202ENST00000520286 TCEAL1Q15170 157 aa10.83□□□□□ -0.68
LSM1-202ENST00000520286 C20orf204Q6ZNR8 217 aa10.83□□□□□ -0.68
LSM1-202ENST00000520286 LRP10Q7Z4F1 713 aa10.83□□□□□ -0.68
LSM1-202ENST00000520286 GPBAR1Q8TDU6 330 aa10.83□□□□□ -0.68
LSM1-202ENST00000520286 CORO1BQ9BR76 489 aa10.83□□□□□ -0.68
LSM1-202ENST00000520286 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.83□□□□□ -0.68
LSM1-202ENST00000520286 FAM221BA6H8Z2 402 aa10.82□□□□□ -0.68
LSM1-202ENST00000520286 ALBP02768 609 aa10.82□□□□□ -0.68
LSM1-202ENST00000520286 EPXP11678 715 aa10.82□□□□□ -0.68
LSM1-202ENST00000520286 CDK8P49336 464 aa10.82□□□□□ -0.68
LSM1-202ENST00000520286 AFF1P51825 1210 aaKnown RBP10.82□□□□□ -0.68
LSM1-202ENST00000520286 POU4F3Q15319 338 aa10.82□□□□□ -0.68
LSM1-202ENST00000520286 OSGEPQ9NPF4 335 aa10.82□□□□□ -0.68
LSM1-202ENST00000520286 ST7Q9NRC1 585 aa10.82□□□□□ -0.68
LSM1-202ENST00000520286 FSCN2O14926 492 aa10.81□□□□□ -0.68
LSM1-202ENST00000520286 ECEL1O95672 775 aa10.81□□□□□ -0.68
LSM1-202ENST00000520286 DDR2Q16832 855 aa10.81□□□□□ -0.68
LSM1-202ENST00000520286 NPAS3Q8IXF0 933 aa10.81□□□□□ -0.68
LSM1-202ENST00000520286 COL25A1Q9BXS0 654 aaPredicted RBP10.81□□□□□ -0.68
LSM1-202ENST00000520286 NRSN2Q9GZP1 204 aa10.81□□□□□ -0.68
LSM1-202ENST00000520286 CCDC113Q9H0I3 377 aa10.81□□□□□ -0.68
LSM1-202ENST00000520286 MSRB2Q9Y3D2 182 aa10.81□□□□□ -0.68
LSM1-202ENST00000520286 H3BM21 787 aa10.8□□□□□ -0.68
LSM1-202ENST00000520286 LCE2BO14633 110 aa10.8□□□□□ -0.68
LSM1-202ENST00000520286 LILRB5O75023 590 aa10.8□□□□□ -0.68
LSM1-202ENST00000520286 SELPP16109 830 aa10.8□□□□□ -0.68
LSM1-202ENST00000520286 HSD3B2P26439 372 aa10.8□□□□□ -0.68
LSM1-202ENST00000520286 MAOBP27338 520 aa10.8□□□□□ -0.68
LSM1-202ENST00000520286 PPP2R5EQ16537 467 aa10.8□□□□□ -0.68
LSM1-202ENST00000520286 WIPI1Q5MNZ9 446 aaPredicted RBP10.8□□□□□ -0.68
LSM1-202ENST00000520286 TNKS2Q9H2K2 1166 aa10.8□□□□□ -0.68
LSM1-202ENST00000520286 CCDC86Q9H6F5 360 aaKnown RBP10.8□□□□□ -0.68
LSM1-202ENST00000520286 KRT82Q9NSB4 513 aa10.8□□□□□ -0.68
LSM1-202ENST00000520286 GFRA2O00451 464 aa10.79□□□□□ -0.68
LSM1-202ENST00000520286 CLSTN1O94985 981 aa10.79□□□□□ -0.68
LSM1-202ENST00000520286 CASP7P55210 303 aa10.79□□□□□ -0.68
LSM1-202ENST00000520286 FXNQ16595 210 aa10.79□□□□□ -0.68
LSM1-202ENST00000520286 RNFT1Q5M7Z0 435 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms