RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 FAM163AQ96GL9 167 aaPredicted RBP36.59■■■■□ 3.45
SYNPO-203ENST00000518872 MANSC4A6NHS7 340 aaPredicted RBP36.58■■■■□ 3.45
SYNPO-203ENST00000518872 INHBEP58166 350 aa36.58■■■■□ 3.45
SYNPO-203ENST00000518872 GORABQ5T7V8 394 aa36.58■■■■□ 3.45
SYNPO-203ENST00000518872 HMG20BQ9P0W2 317 aa36.58■■■■□ 3.45
SYNPO-203ENST00000518872 MKRN3Q13064 507 aaKnown RBP36.57■■■■□ 3.44
SYNPO-203ENST00000518872 TNNI3KQ59H18 835 aa36.57■■■■□ 3.44
SYNPO-203ENST00000518872 SLF2Q8IX21 1173 aa36.57■■■■□ 3.44
SYNPO-203ENST00000518872 DDX55Q8NHQ9 600 aaKnown RBP eCLIP36.57■■■■□ 3.44
SYNPO-203ENST00000518872 FAM151AQ8WW52 585 aa36.57■■■■□ 3.44
SYNPO-203ENST00000518872 CFHR5Q9BXR6 569 aa36.57■■■■□ 3.44
SYNPO-203ENST00000518872 FPGT-TNNI3KV9GXZ4 949 aa36.57■■■■□ 3.44
SYNPO-203ENST00000518872 UQCRFS1P1P0C7P4 283 aa36.56■■■■□ 3.44
SYNPO-203ENST00000518872 OS9Q13438 667 aaPredicted RBP36.56■■■■□ 3.44
SYNPO-203ENST00000518872 SPATA5Q8NB90 893 aa36.56■■■■□ 3.44
SYNPO-203ENST00000518872 ABCF2Q9UG63 623 aa36.56■■■■□ 3.44
SYNPO-203ENST00000518872 PPP1R3FQ6ZSY5 799 aaPredicted RBP36.55■■■■□ 3.44
SYNPO-203ENST00000518872 DZIP1Q86YF9 867 aaKnown RBP36.55■■■■□ 3.44
SYNPO-203ENST00000518872 DDX19BQ9UMR2 479 aa36.55■■■■□ 3.44
SYNPO-203ENST00000518872 MAP3K9P80192 1104 aa36.54■■■■□ 3.44
SYNPO-203ENST00000518872 NOM1Q5C9Z4 860 aaKnown RBP36.54■■■■□ 3.44
SYNPO-203ENST00000518872 AK9Q5TCS8 1911 aa36.53■■■■□ 3.44
SYNPO-203ENST00000518872 ERICH6Q7L0X2 663 aa36.53■■■■□ 3.44
SYNPO-203ENST00000518872 ALDH1A1P00352 501 aa36.52■■■■□ 3.44
SYNPO-203ENST00000518872 USP40Q9NVE5 1235 aa36.52■■■■□ 3.44
SYNPO-203ENST00000518872 RFX7Q2KHR2 1363 aa36.52■■■■□ 3.44
SYNPO-203ENST00000518872 GJA5P36382 358 aa36.51■■■■□ 3.44
SYNPO-203ENST00000518872 MCAMP43121 646 aa36.51■■■■□ 3.44
SYNPO-203ENST00000518872 DCAF15Q66K64 600 aa36.51■■■■□ 3.44
SYNPO-203ENST00000518872 ZNF512BQ96KM6 892 aaPredicted RBP36.51■■■■□ 3.44
SYNPO-203ENST00000518872 IDI2Q9BXS1 227 aa36.51■■■■□ 3.44
SYNPO-203ENST00000518872 NFIAQ12857 509 aa36.5■■■■□ 3.43
SYNPO-203ENST00000518872 VGLL4Q14135 290 aa36.5■■■■□ 3.43
SYNPO-203ENST00000518872 ABHD8Q96I13 439 aa36.5■■■■□ 3.43
SYNPO-203ENST00000518872 FAM198AQ9UFP1 575 aa36.5■■■■□ 3.43
SYNPO-203ENST00000518872 MECOMQ03112 1051 aa36.49■■■■□ 3.43
SYNPO-203ENST00000518872 CCDC158Q5M9N0 1113 aa36.49■■■■□ 3.43
SYNPO-203ENST00000518872 PI16Q6UXB8 463 aa36.49■■■■□ 3.43
SYNPO-203ENST00000518872 DBNDD2Q9BQY9 259 aa36.49■■■■□ 3.43
SYNPO-203ENST00000518872 CHMP4BQ9H444 224 aaKnown RBP36.49■■■■□ 3.43
SYNPO-203ENST00000518872 ELP3Q9H9T3 547 aa36.49■■■■□ 3.43
SYNPO-203ENST00000518872 CSADQ9Y600 493 aa36.49■■■■□ 3.43
SYNPO-203ENST00000518872 MROH7-TTC4A0A0A0MT08 1334 aa36.49■■■■□ 3.43
SYNPO-203ENST00000518872 TESPA1A2RU30 521 aaPredicted RBP36.48■■■■□ 3.43
SYNPO-203ENST00000518872 CAPN15O75808 1086 aa36.48■■■■□ 3.43
SYNPO-203ENST00000518872 ZNF384Q8TF68 577 aa36.48■■■■□ 3.43
SYNPO-203ENST00000518872 ZBTB40Q9NUA8 1239 aa36.48■■■■□ 3.43
SYNPO-203ENST00000518872 IGSF3O75054 1194 aa36.47■■■■□ 3.43
SYNPO-203ENST00000518872 IFNL1Q8IU54 200 aa36.47■■■■□ 3.43
SYNPO-203ENST00000518872 ERC1Q8IUD2 1116 aa36.47■■■■□ 3.43
SYNPO-203ENST00000518872 RPAP2Q8IXW5 612 aaPredicted RBP36.47■■■■□ 3.43
SYNPO-203ENST00000518872 OPTNQ96CV9 577 aa36.47■■■■□ 3.43
SYNPO-203ENST00000518872 COG6Q9Y2V7 657 aa36.47■■■■□ 3.43
SYNPO-203ENST00000518872 DOCK2Q92608 1830 aa36.47■■■■□ 3.43
SYNPO-203ENST00000518872 GPR75-ASB3A0A0A6YYF3 556 aa36.46■■■■□ 3.43
SYNPO-203ENST00000518872 ENTPD3O75355 529 aa36.46■■■■□ 3.43
SYNPO-203ENST00000518872 NSUN4Q96CB9 384 aaKnown RBP36.46■■■■□ 3.43
SYNPO-203ENST00000518872 MAST2Q6P0Q8 1798 aa36.45■■■■□ 3.43
SYNPO-203ENST00000518872 TBC1D8O95759 1140 aa36.45■■■■□ 3.43
SYNPO-203ENST00000518872 GSTO1P78417 241 aa36.45■■■■□ 3.43
SYNPO-203ENST00000518872 TCP10Q12799 353 aa36.45■■■■□ 3.43
SYNPO-203ENST00000518872 PDE3AQ14432 1141 aa36.45■■■■□ 3.43
SYNPO-203ENST00000518872 TTC39AQ5SRH9 613 aa36.45■■■■□ 3.43
SYNPO-203ENST00000518872 WRNIP1Q96S55 665 aa36.45■■■■□ 3.43
SYNPO-203ENST00000518872 ZNF341Q9BYN7 854 aa36.45■■■■□ 3.43
SYNPO-203ENST00000518872 MCOLN1Q9GZU1 580 aa36.45■■■■□ 3.43
SYNPO-203ENST00000518872 SPDYE5A6NIY4 337 aa36.44■■■■□ 3.42
SYNPO-203ENST00000518872 MAP4K4O95819 1239 aaPredicted RBP36.44■■■■□ 3.42
SYNPO-203ENST00000518872 LDHCP07864 332 aa36.44■■■■□ 3.42
SYNPO-203ENST00000518872 BTDP43251 543 aa36.44■■■■□ 3.42
SYNPO-203ENST00000518872 HSP90AB4PQ58FF6 505 aa36.44■■■■□ 3.42
SYNPO-203ENST00000518872 DBNLQ9UJU6 430 aaKnown RBP36.44■■■■□ 3.42
SYNPO-203ENST00000518872 IGF2BP3O00425 579 aaKnown RBP eCLIP36.43■■■■□ 3.42
SYNPO-203ENST00000518872 DGKZQ13574 1117 aa36.43■■■■□ 3.42
SYNPO-203ENST00000518872 TBC1D9Q6ZT07 1266 aa36.43■■■■□ 3.42
SYNPO-203ENST00000518872 EAF2Q96CJ1 260 aaPredicted RBP36.43■■■■□ 3.42
SYNPO-203ENST00000518872 MS4A4AQ96JQ5 239 aa36.43■■■■□ 3.42
SYNPO-203ENST00000518872 ZBTB4Q9P1Z0 1013 aaPredicted RBP36.43■■■■□ 3.42
SYNPO-203ENST00000518872 ZNF112Q9UJU3 913 aa36.43■■■■□ 3.42
SYNPO-203ENST00000518872 SNCAIPQ9Y6H5 919 aa36.43■■■■□ 3.42
SYNPO-203ENST00000518872 NPM3O75607 178 aaKnown RBP36.42■■■■□ 3.42
SYNPO-203ENST00000518872 RGS3P49796 1198 aa36.42■■■■□ 3.42
SYNPO-203ENST00000518872 GOLGA6L2Q8N9W4 650 aaPredicted RBP36.42■■■■□ 3.42
SYNPO-203ENST00000518872 ATRNL1Q5VV63 1379 aa36.41■■■■□ 3.42
SYNPO-203ENST00000518872 GPR25O00155 361 aa36.41■■■■□ 3.42
SYNPO-203ENST00000518872 WDHD1O75717 1129 aaPredicted RBP36.41■■■■□ 3.42
SYNPO-203ENST00000518872 RHBDL3P58872 404 aa36.41■■■■□ 3.42
SYNPO-203ENST00000518872 OTUD7BQ6GQQ9 843 aa36.41■■■■□ 3.42
SYNPO-203ENST00000518872 ERO1BQ86YB8 467 aa36.41■■■■□ 3.42
SYNPO-203ENST00000518872 EXOC6BQ9Y2D4 811 aa36.41■■■■□ 3.42
SYNPO-203ENST00000518872 MYO5AQ9Y4I1 1855 aaKnown RBP36.41■■■■□ 3.42
SYNPO-203ENST00000518872 HMMRO75330 724 aa36.4■■■■□ 3.42
SYNPO-203ENST00000518872 ZNF296Q8WUU4 475 aaPredicted RBP36.4■■■■□ 3.42
SYNPO-203ENST00000518872 RAI14Q9P0K7 980 aa36.4■■■■□ 3.42
SYNPO-203ENST00000518872 MIGA2Q7L4E1 593 aa36.39■■■■□ 3.42
SYNPO-203ENST00000518872 ZFPM1Q8IX07 1006 aa36.39■■■■□ 3.42
SYNPO-203ENST00000518872 CNKSR2Q8WXI2 1034 aa36.39■■■■□ 3.42
SYNPO-203ENST00000518872 LRP2BPQ9P2M1 347 aa36.39■■■■□ 3.42
SYNPO-203ENST00000518872 GTF2A2P52657 109 aa36.38■■■■□ 3.41
SYNPO-203ENST00000518872 CTU1Q7Z7A3 348 aaKnown RBP36.38■■■■□ 3.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms