RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 COL25A1Q9BXS0 654 aaPredicted RBP14.18□□□□□ -0.14
LIMCH1-221ENST00000515785 CNNM1Q9NRU3 951 aa14.18□□□□□ -0.14
LIMCH1-221ENST00000515785 ZMYND8Q9ULU4 1186 aaPredicted RBP14.18□□□□□ -0.14
LIMCH1-221ENST00000515785 IQSEC3Q9UPP2 1182 aaPredicted RBP14.18□□□□□ -0.14
LIMCH1-221ENST00000515785 MGAMO43451 1857 aa14.17□□□□□ -0.14
LIMCH1-221ENST00000515785 APAF1O14727 1248 aa14.17□□□□□ -0.14
LIMCH1-221ENST00000515785 HIBADHP31937 336 aaKnown RBP14.17□□□□□ -0.14
LIMCH1-221ENST00000515785 INPP5BP32019 993 aa14.17□□□□□ -0.14
LIMCH1-221ENST00000515785 FCGRTP55899 365 aa14.17□□□□□ -0.14
LIMCH1-221ENST00000515785 FOXO4P98177 505 aa14.17□□□□□ -0.14
LIMCH1-221ENST00000515785 PPATQ06203 517 aa14.17□□□□□ -0.14
LIMCH1-221ENST00000515785 CHAF1AQ13111 956 aaPredicted RBP14.17□□□□□ -0.14
LIMCH1-221ENST00000515785 LDHAL6AQ6ZMR3 332 aa14.17□□□□□ -0.14
LIMCH1-221ENST00000515785 PAWRQ96IZ0 340 aaKnown RBP14.17□□□□□ -0.14
LIMCH1-221ENST00000515785 CHMP4AQ9BY43 222 aa14.17□□□□□ -0.14
LIMCH1-221ENST00000515785 ALPK3Q96L96 1907 aa14.16□□□□□ -0.14
LIMCH1-221ENST00000515785 CYP2C8P10632 490 aa14.16□□□□□ -0.14
LIMCH1-221ENST00000515785 CALD1Q05682 793 aaKnown RBP14.16□□□□□ -0.14
LIMCH1-221ENST00000515785 TAF7LQ5H9L4 462 aa14.16□□□□□ -0.14
LIMCH1-221ENST00000515785 C7orf61Q8IZ16 206 aa14.16□□□□□ -0.14
LIMCH1-221ENST00000515785 SLAIN1Q8ND83 568 aa14.16□□□□□ -0.14
LIMCH1-221ENST00000515785 FAM84BQ96KN1 310 aaPredicted RBP14.16□□□□□ -0.14
LIMCH1-221ENST00000515785 MYH16Q9H6N6 1097 aa14.16□□□□□ -0.14
LIMCH1-221ENST00000515785 TAOK2Q9UL54 1235 aa14.16□□□□□ -0.14
LIMCH1-221ENST00000515785 ADGRA2Q96PE1 1338 aa14.15□□□□□ -0.14
LIMCH1-221ENST00000515785 INHAP05111 366 aa14.15□□□□□ -0.14
LIMCH1-221ENST00000515785 LMBR1LQ6UX01 489 aa14.15□□□□□ -0.14
LIMCH1-221ENST00000515785 TSR2Q969E8 191 aaKnown RBP14.15□□□□□ -0.14
LIMCH1-221ENST00000515785 ZNF341Q9BYN7 854 aa14.15□□□□□ -0.14
LIMCH1-221ENST00000515785 MTMR10Q9NXD2 777 aa14.15□□□□□ -0.14
LIMCH1-221ENST00000515785 STXBP5LQ9Y2K9 1186 aa14.15□□□□□ -0.14
LIMCH1-221ENST00000515785 AK9Q5TCS8 1911 aa14.15□□□□□ -0.14
LIMCH1-221ENST00000515785 SYN1P17600 705 aa14.14□□□□□ -0.15
LIMCH1-221ENST00000515785 FLT3LGP49771 235 aa14.14□□□□□ -0.15
LIMCH1-221ENST00000515785 BCAMP50895 628 aa14.14□□□□□ -0.15
LIMCH1-221ENST00000515785 DCAF15Q66K64 600 aa14.14□□□□□ -0.15
LIMCH1-221ENST00000515785 DIS3LQ8TF46 1054 aaKnown RBP14.14□□□□□ -0.15
LIMCH1-221ENST00000515785 GDF15Q99988 308 aa14.14□□□□□ -0.15
LIMCH1-221ENST00000515785 TMOD2Q9NZR1 351 aa14.14□□□□□ -0.15
LIMCH1-221ENST00000515785 MYBBP1AQ9BQG0 1328 aaKnown RBP14.14□□□□□ -0.15
LIMCH1-221ENST00000515785 FRAT2O75474 233 aaPredicted RBP14.13□□□□□ -0.15
LIMCH1-221ENST00000515785 BCRP11274 1271 aa14.13□□□□□ -0.15
LIMCH1-221ENST00000515785 BMP8BP34820 402 aa14.13□□□□□ -0.15
LIMCH1-221ENST00000515785 FKBP5Q13451 457 aaPredicted RBP14.13□□□□□ -0.15
LIMCH1-221ENST00000515785 MOGSQ13724 837 aa14.13□□□□□ -0.15
LIMCH1-221ENST00000515785 CCDC57Q2TAC2 916 aa14.13□□□□□ -0.15
LIMCH1-221ENST00000515785 EPHA10Q5JZY3 1008 aa14.13□□□□□ -0.15
LIMCH1-221ENST00000515785 LINS1Q8NG48 757 aa14.13□□□□□ -0.15
LIMCH1-221ENST00000515785 DNAAF4Q8WXU2 420 aa14.13□□□□□ -0.15
LIMCH1-221ENST00000515785 TEKT1Q969V4 418 aa14.13□□□□□ -0.15
LIMCH1-221ENST00000515785 HOOK2Q96ED9 719 aa14.13□□□□□ -0.15
LIMCH1-221ENST00000515785 GPAT2Q6NUI2 795 aa14.12□□□□□ -0.15
LIMCH1-221ENST00000515785 NECAB2Q7Z6G3 386 aa14.12□□□□□ -0.15
LIMCH1-221ENST00000515785 VPS37DQ86XT2 251 aa14.12□□□□□ -0.15
LIMCH1-221ENST00000515785 PARK7Q99497 189 aaKnown RBP14.12□□□□□ -0.15
LIMCH1-221ENST00000515785 KCNH4Q9UQ05 1017 aa14.12□□□□□ -0.15
LIMCH1-221ENST00000515785 TCP10Q12799 353 aa14.11□□□□□ -0.15
LIMCH1-221ENST00000515785 FLIIQ13045 1269 aa14.11□□□□□ -0.15
LIMCH1-221ENST00000515785 UBE4AQ14139 1066 aa14.11□□□□□ -0.15
LIMCH1-221ENST00000515785 TWISTNBQ3B726 338 aaPredicted RBP14.11□□□□□ -0.15
LIMCH1-221ENST00000515785 GPR153Q6NV75 609 aa14.11□□□□□ -0.15
LIMCH1-221ENST00000515785 FAM83AQ86UY5 434 aa14.11□□□□□ -0.15
LIMCH1-221ENST00000515785 PUS3Q9BZE2 481 aaKnown RBP14.11□□□□□ -0.15
LIMCH1-221ENST00000515785 TNPO2O14787 897 aaKnown RBP14.1□□□□□ -0.15
LIMCH1-221ENST00000515785 MAGEA10P43363 369 aaPredicted RBP14.1□□□□□ -0.15
LIMCH1-221ENST00000515785 HDLBPQ00341 1268 aaKnown RBP14.1□□□□□ -0.15
LIMCH1-221ENST00000515785 APOBEC3HQ6NTF7 200 aaKnown RBP14.1□□□□□ -0.15
LIMCH1-221ENST00000515785 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.1□□□□□ -0.15
LIMCH1-221ENST00000515785 ZDHHC15Q96MV8 337 aa14.1□□□□□ -0.15
LIMCH1-221ENST00000515785 CRISPLD2Q9H0B8 497 aa14.1□□□□□ -0.15
LIMCH1-221ENST00000515785 F6X3S4 739 aa14.09□□□□□ -0.15
LIMCH1-221ENST00000515785 LRIT3Q3SXY7 679 aa14.09□□□□□ -0.15
LIMCH1-221ENST00000515785 GADL1Q6ZQY3 521 aa14.09□□□□□ -0.15
LIMCH1-221ENST00000515785 TDHQ8IZJ6 230 aa14.09□□□□□ -0.15
LIMCH1-221ENST00000515785 PXYLP1Q8TE99 480 aa14.09□□□□□ -0.15
LIMCH1-221ENST00000515785 UBE2OQ9C0C9 1292 aaKnown RBP14.09□□□□□ -0.15
LIMCH1-221ENST00000515785 PAK6Q9NQU5 681 aaPredicted RBP14.09□□□□□ -0.15
LIMCH1-221ENST00000515785 ZNF112Q9UJU3 913 aa14.09□□□□□ -0.15
LIMCH1-221ENST00000515785 DOCK3Q8IZD9 2030 aa14.08□□□□□ -0.15
LIMCH1-221ENST00000515785 LAMA3Q16787 3333 aa14.08□□□□□ -0.16
LIMCH1-221ENST00000515785 HAX1O00165 279 aa14.08□□□□□ -0.16
LIMCH1-221ENST00000515785 CXCL11O14625 94 aa14.08□□□□□ -0.16
LIMCH1-221ENST00000515785 FKBP1CQ5VVH2 108 aa14.08□□□□□ -0.16
LIMCH1-221ENST00000515785 FBXO33Q7Z6M2 555 aa14.08□□□□□ -0.16
LIMCH1-221ENST00000515785 TBC1D22AQ8WUA7 517 aa14.08□□□□□ -0.16
LIMCH1-221ENST00000515785 FAM151AQ8WW52 585 aa14.08□□□□□ -0.16
LIMCH1-221ENST00000515785 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.08□□□□□ -0.16
LIMCH1-221ENST00000515785 IRF5Q13568 498 aa14.07□□□□□ -0.16
LIMCH1-221ENST00000515785 SAMD1Q6SPF0 538 aaPredicted RBP14.07□□□□□ -0.16
LIMCH1-221ENST00000515785 FAM161BQ96MY7 647 aa14.07□□□□□ -0.16
LIMCH1-221ENST00000515785 ZHX2Q9Y6X8 837 aa14.07□□□□□ -0.16
LIMCH1-221ENST00000515785 CAPN2P17655 700 aa14.06□□□□□ -0.16
LIMCH1-221ENST00000515785 CAVIN4Q5BKX8 364 aa14.06□□□□□ -0.16
LIMCH1-221ENST00000515785 FASTKD5Q7L8L6 764 aaKnown RBP14.06□□□□□ -0.16
LIMCH1-221ENST00000515785 COA7Q96BR5 231 aa14.06□□□□□ -0.16
LIMCH1-221ENST00000515785 MRIQ9BWK5 157 aa14.06□□□□□ -0.16
LIMCH1-221ENST00000515785 NBPF3Q9H094 633 aa14.06□□□□□ -0.16
LIMCH1-221ENST00000515785 MYCNP04198 464 aaPredicted RBP14.05□□□□□ -0.16
LIMCH1-221ENST00000515785 TRIM32Q13049 653 aa14.05□□□□□ -0.16
LIMCH1-221ENST00000515785 DDX10Q13206 875 aaKnown RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms