RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 TMX3Q96JJ7 454 aa18.95■□□□□ 0.62
NUP54-214ENST00000514307 DBNDD1Q9H9R9 158 aa18.95■□□□□ 0.62
NUP54-214ENST00000514307 AATFQ9NY61 560 aaKnown RBP eCLIP18.95■□□□□ 0.62
NUP54-214ENST00000514307 PCP11498 1178 aaKnown RBP18.94■□□□□ 0.62
NUP54-214ENST00000514307 MCM5P33992 734 aa18.94■□□□□ 0.62
NUP54-214ENST00000514307 PTGER2P43116 358 aa18.94■□□□□ 0.62
NUP54-214ENST00000514307 HDLBPQ00341 1268 aaKnown RBP18.94■□□□□ 0.62
NUP54-214ENST00000514307 AOC3Q16853 763 aa18.94■□□□□ 0.62
NUP54-214ENST00000514307 MFSD6Q6ZSS7 791 aa18.94■□□□□ 0.62
NUP54-214ENST00000514307 INTS4Q96HW7 963 aaKnown RBP18.94■□□□□ 0.62
NUP54-214ENST00000514307 KRT23Q9C075 422 aa18.94■□□□□ 0.62
NUP54-214ENST00000514307 MROH7-TTC4A0A0A0MT08 1334 aa18.94■□□□□ 0.62
NUP54-214ENST00000514307 USP5P45974 858 aa18.93■□□□□ 0.62
NUP54-214ENST00000514307 HAND2P61296 217 aa18.93■□□□□ 0.62
NUP54-214ENST00000514307 EXOSC10Q01780 885 aaKnown RBP18.93■□□□□ 0.62
NUP54-214ENST00000514307 HHIPL2Q6UWX4 724 aa18.93■□□□□ 0.62
NUP54-214ENST00000514307 LARGE2Q8N3Y3 721 aa18.93■□□□□ 0.62
NUP54-214ENST00000514307 SPRYD3Q8NCJ5 442 aa18.93■□□□□ 0.62
NUP54-214ENST00000514307 CHMP5Q9NZZ3 219 aa18.93■□□□□ 0.62
NUP54-214ENST00000514307 ANAPC4Q9UJX5 808 aa18.93■□□□□ 0.62
NUP54-214ENST00000514307 CIZ1Q9ULV3 898 aaPredicted RBP18.93■□□□□ 0.62
NUP54-214ENST00000514307 LRRC37AA6NMS7 1700 aa18.93■□□□□ 0.62
NUP54-214ENST00000514307 WDR19Q8NEZ3 1342 aa18.93■□□□□ 0.62
NUP54-214ENST00000514307 A0A1B0GUL6 1792 aa18.92■□□□□ 0.62
NUP54-214ENST00000514307 NT5C2P49902 561 aa18.92■□□□□ 0.62
NUP54-214ENST00000514307 CUL4AQ13619 759 aa18.92■□□□□ 0.62
NUP54-214ENST00000514307 SBK1Q52WX2 424 aa18.92■□□□□ 0.62
NUP54-214ENST00000514307 AKNAD1Q5T1N1 836 aa18.92■□□□□ 0.62
NUP54-214ENST00000514307 FBXL16Q8N461 479 aa18.92■□□□□ 0.62
NUP54-214ENST00000514307 TTF2Q9UNY4 1162 aaKnown RBP18.92■□□□□ 0.62
NUP54-214ENST00000514307 MINDY4BA8MYZ0 360 aa18.91■□□□□ 0.62
NUP54-214ENST00000514307 CPA1P15085 419 aa18.91■□□□□ 0.62
NUP54-214ENST00000514307 DIXDC1Q155Q3 683 aa18.91■□□□□ 0.62
NUP54-214ENST00000514307 Q6ZUG5 572 aa18.91■□□□□ 0.62
NUP54-214ENST00000514307 TEKT1Q969V4 418 aa18.91■□□□□ 0.62
NUP54-214ENST00000514307 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.91■□□□□ 0.62
NUP54-214ENST00000514307 TAF6LQ9Y6J9 622 aa18.91■□□□□ 0.62
NUP54-214ENST00000514307 BTDP43251 543 aa18.9■□□□□ 0.62
NUP54-214ENST00000514307 PPARAQ07869 468 aa18.9■□□□□ 0.62
NUP54-214ENST00000514307 GRIK5Q16478 980 aa18.9■□□□□ 0.62
NUP54-214ENST00000514307 DACT2Q5SW24 774 aa18.9■□□□□ 0.62
NUP54-214ENST00000514307 STOX1Q6ZVD7 989 aa18.9■□□□□ 0.62
NUP54-214ENST00000514307 NIM1KQ8IY84 436 aa18.9■□□□□ 0.62
NUP54-214ENST00000514307 SDR42E1Q8WUS8 393 aa18.9■□□□□ 0.62
NUP54-214ENST00000514307 JDP2Q8WYK2 163 aa18.9■□□□□ 0.62
NUP54-214ENST00000514307 EPB41L4AQ9HCS5 686 aaPredicted RBP18.9■□□□□ 0.62
NUP54-214ENST00000514307 ARPP21Q9UBL0 812 aaPredicted RBP18.9■□□□□ 0.62
NUP54-214ENST00000514307 ZNRF3Q9ULT6 936 aa18.9■□□□□ 0.62
NUP54-214ENST00000514307 BCS1LQ9Y276 419 aa18.9■□□□□ 0.62
NUP54-214ENST00000514307 MYO3BQ8WXR4 1341 aa18.9■□□□□ 0.62
NUP54-214ENST00000514307 DUOX1Q9NRD9 1551 aa18.89■□□□□ 0.62
NUP54-214ENST00000514307 USP17L12C9JPN9 530 aa18.89■□□□□ 0.61
NUP54-214ENST00000514307 USP17L21D6R901 530 aa18.89■□□□□ 0.61
NUP54-214ENST00000514307 IARSP41252 1262 aaKnown RBP18.89■□□□□ 0.61
NUP54-214ENST00000514307 MMP14P50281 582 aa18.89■□□□□ 0.61
NUP54-214ENST00000514307 CTR9Q6PD62 1173 aa18.89■□□□□ 0.61
NUP54-214ENST00000514307 NOL8Q76FK4 1167 aaKnown RBP18.89■□□□□ 0.61
NUP54-214ENST00000514307 STAG1Q8WVM7 1258 aa18.89■□□□□ 0.61
NUP54-214ENST00000514307 MTA3Q9BTC8 594 aa18.89■□□□□ 0.61
NUP54-214ENST00000514307 SLKQ9H2G2 1235 aaPredicted RBP18.89■□□□□ 0.61
NUP54-214ENST00000514307 TAOK3Q9H2K8 898 aa18.89■□□□□ 0.61
NUP54-214ENST00000514307 DCP1AQ9NPI6 582 aaPredicted RBP18.89■□□□□ 0.61
NUP54-214ENST00000514307 GAKO14976 1311 aa18.89■□□□□ 0.61
NUP54-214ENST00000514307 COL11A2P13942 1736 aaPredicted RBP18.88■□□□□ 0.61
NUP54-214ENST00000514307 PRC1O43663 620 aa18.88■□□□□ 0.61
NUP54-214ENST00000514307 PDIA4P13667 645 aaKnown RBP18.88■□□□□ 0.61
NUP54-214ENST00000514307 TEX11Q8IYF3 940 aa18.88■□□□□ 0.61
NUP54-214ENST00000514307 TMTC2Q8N394 836 aa18.88■□□□□ 0.61
NUP54-214ENST00000514307 CERS5Q8N5B7 392 aa18.88■□□□□ 0.61
NUP54-214ENST00000514307 SH3RF3Q8TEJ3 882 aaPredicted RBP18.88■□□□□ 0.61
NUP54-214ENST00000514307 TMEM87BQ96K49 555 aa18.88■□□□□ 0.61
NUP54-214ENST00000514307 ZNF287Q9HBT7 754 aa18.88■□□□□ 0.61
NUP54-214ENST00000514307 ZNF277Q9NRM2 450 aaPredicted RBP18.88■□□□□ 0.61
NUP54-214ENST00000514307 MCM9Q9NXL9 1143 aa18.88■□□□□ 0.61
NUP54-214ENST00000514307 SLX4Q8IY92 1834 aa18.88■□□□□ 0.61
NUP54-214ENST00000514307 F8W031 263 aaPredicted RBP18.87■□□□□ 0.61
NUP54-214ENST00000514307 CTDSPL2Q05D32 466 aa18.87■□□□□ 0.61
NUP54-214ENST00000514307 PDE4BQ07343 736 aa18.87■□□□□ 0.61
NUP54-214ENST00000514307 SART3Q15020 963 aaKnown RBP18.87■□□□□ 0.61
NUP54-214ENST00000514307 TNIP1Q15025 636 aa18.87■□□□□ 0.61
NUP54-214ENST00000514307 ZNF274Q96GC6 653 aaPredicted RBP18.87■□□□□ 0.61
NUP54-214ENST00000514307 KCNQ5Q9NR82 932 aa18.87■□□□□ 0.61
NUP54-214ENST00000514307 SERPINA10Q9UK55 444 aa18.87■□□□□ 0.61
NUP54-214ENST00000514307 HDAC9Q9UKV0 1011 aa18.87■□□□□ 0.61
NUP54-214ENST00000514307 ERICH2A1L162 156 aa18.86■□□□□ 0.61
NUP54-214ENST00000514307 POLR3DP05423 398 aaPredicted RBP18.86■□□□□ 0.61
NUP54-214ENST00000514307 VIL1P09327 827 aaKnown RBP18.86■□□□□ 0.61
NUP54-214ENST00000514307 NUCB2P80303 420 aa18.86■□□□□ 0.61
NUP54-214ENST00000514307 TOB2Q14106 344 aaPredicted RBP18.86■□□□□ 0.61
NUP54-214ENST00000514307 MB21D2Q8IYB1 491 aaPredicted RBP18.86■□□□□ 0.61
NUP54-214ENST00000514307 TGFBRAP1Q8WUH2 860 aa18.86■□□□□ 0.61
NUP54-214ENST00000514307 ESR2Q92731 530 aa18.86■□□□□ 0.61
NUP54-214ENST00000514307 AGXT2Q9BYV1 514 aa18.86■□□□□ 0.61
NUP54-214ENST00000514307 TOMM22Q9NS69 142 aa18.86■□□□□ 0.61
NUP54-214ENST00000514307 USP40Q9NVE5 1235 aa18.86■□□□□ 0.61
NUP54-214ENST00000514307 DAGLAQ9Y4D2 1042 aa18.86■□□□□ 0.61
NUP54-214ENST00000514307 DOCK2Q92608 1830 aa18.86■□□□□ 0.61
NUP54-214ENST00000514307 LTBP1Q14766 1721 aa18.86■□□□□ 0.61
NUP54-214ENST00000514307 SNED1Q8TER0 1413 aa18.85■□□□□ 0.61
NUP54-214ENST00000514307 CRKP46108 304 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms