RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 PTPRHQ9HD43 1115 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 TFIP11Q9UBB9 837 aaKnown RBP11.4□□□□□ -0.58
USP53-207ENST00000510852 FOSL1P15407 271 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 ZNF132P52740 706 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 GPSM2P81274 684 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 PDIA6Q15084 440 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 TMEM95Q3KNT9 176 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 ATF7IPQ6VMQ6 1270 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 FRS2Q8WU20 508 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 CDHR1Q96JP9 859 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 TNNQ9UQP3 1299 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 A6NJY4 79 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 TRIM27P14373 513 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 ATP6V1AP38606 617 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 DNAJC21Q5F1R6 531 aaKnown RBP11.39□□□□□ -0.59
USP53-207ENST00000510852 HELQQ8TDG4 1101 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 ARHGAP45Q92619 1136 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 GMLQ99445 158 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 PDGFDQ9GZP0 370 aaPredicted RBP11.39□□□□□ -0.59
USP53-207ENST00000510852 KMT5AQ9NQR1 393 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 DDX21Q9NR30 783 aaKnown RBP eCLIP11.39□□□□□ -0.59
USP53-207ENST00000510852 SBF2Q86WG5 1849 aa11.39□□□□□ -0.59
USP53-207ENST00000510852 CCDC163A0A0D9SF12 145 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 STARD3NLO95772 234 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 UTP14CQ5TAP6 766 aaKnown RBP11.38□□□□□ -0.59
USP53-207ENST00000510852 SMAP1Q8IYB5 467 aaPredicted RBP11.38□□□□□ -0.59
USP53-207ENST00000510852 MICALL1Q8N3F8 863 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 UCN2Q96RP3 112 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 PHAXQ9H814 394 aaKnown RBP11.38□□□□□ -0.59
USP53-207ENST00000510852 FARP1Q9Y4F1 1045 aaPredicted RBP11.38□□□□□ -0.59
USP53-207ENST00000510852 BTAF1O14981 1849 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 PTPRCP08575 1304 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 GOLGA6L6A8MZA4 724 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 A1BGP04217 495 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 MYL6BP14649 208 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 CDC27P30260 824 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 PIP4K2AP48426 406 aaPredicted RBP11.38□□□□□ -0.59
USP53-207ENST00000510852 PDE3AQ14432 1141 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 LMBRD2Q68DH5 695 aaPredicted RBP11.38□□□□□ -0.59
USP53-207ENST00000510852 ALKBH2Q6NS38 261 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 PANK1Q8TE04 598 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 ATRIPQ8WXE1 791 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 LARP6Q9BRS8 491 aaKnown RBP11.38□□□□□ -0.59
USP53-207ENST00000510852 HYPKQ9NX55 129 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 EVLQ9UI08 416 aaPredicted RBP11.38□□□□□ -0.59
USP53-207ENST00000510852 CHMP3Q9Y3E7 222 aa11.38□□□□□ -0.59
USP53-207ENST00000510852 ERBB4Q15303 1308 aa11.37□□□□□ -0.59
USP53-207ENST00000510852 NBPF26B4DH59 902 aa11.37□□□□□ -0.59
USP53-207ENST00000510852 CYP19A1P11511 503 aaPredicted RBP11.37□□□□□ -0.59
USP53-207ENST00000510852 RLBP1P12271 317 aa11.37□□□□□ -0.59
USP53-207ENST00000510852 ITPK1Q13572 414 aa11.37□□□□□ -0.59
USP53-207ENST00000510852 Q3C1V9 767 aa11.37□□□□□ -0.59
USP53-207ENST00000510852 NBPF14Q5TI25 921 aa11.37□□□□□ -0.59
USP53-207ENST00000510852 PPP4R4Q6NUP7 873 aa11.37□□□□□ -0.59
USP53-207ENST00000510852 NBPF15Q8N660 670 aa11.37□□□□□ -0.59
USP53-207ENST00000510852 MYRIPQ8NFW9 859 aa11.37□□□□□ -0.59
USP53-207ENST00000510852 ZMIZ1Q9ULJ6 1067 aa11.37□□□□□ -0.59
USP53-207ENST00000510852 ENPP3O14638 875 aa11.37□□□□□ -0.59
USP53-207ENST00000510852 PODNQ7Z5L7 613 aa11.37□□□□□ -0.59
USP53-207ENST00000510852 DZIP3Q86Y13 1208 aaKnown RBP11.37□□□□□ -0.59
USP53-207ENST00000510852 DZIP1LQ8IYY4 767 aaKnown RBP11.37□□□□□ -0.59
USP53-207ENST00000510852 API5Q9BZZ5 524 aaKnown RBP11.37□□□□□ -0.59
USP53-207ENST00000510852 SUN2Q9UH99 717 aa11.37□□□□□ -0.59
USP53-207ENST00000510852 MRPS23Q9Y3D9 190 aaKnown RBP11.37□□□□□ -0.59
USP53-207ENST00000510852 FKBP5Q13451 457 aaPredicted RBP11.36□□□□□ -0.59
USP53-207ENST00000510852 ZCCHC8Q6NZY4 707 aaKnown RBP11.36□□□□□ -0.59
USP53-207ENST00000510852 LRP10Q7Z4F1 713 aa11.36□□□□□ -0.59
USP53-207ENST00000510852 CLASRPQ8N2M8 674 aaKnown RBP11.36□□□□□ -0.59
USP53-207ENST00000510852 LAMB4A4D0S4 1761 aa11.36□□□□□ -0.59
USP53-207ENST00000510852 GRXCR2A6NFK2 248 aa11.36□□□□□ -0.59
USP53-207ENST00000510852 TSPAN7P41732 249 aa11.36□□□□□ -0.59
USP53-207ENST00000510852 KCNQ4P56696 695 aa11.36□□□□□ -0.59
USP53-207ENST00000510852 LCA5Q86VQ0 697 aa11.36□□□□□ -0.59
USP53-207ENST00000510852 TEX19Q8NA77 164 aa11.36□□□□□ -0.59
USP53-207ENST00000510852 TAF4BQ92750 862 aa11.36□□□□□ -0.59
USP53-207ENST00000510852 FRMD6Q96NE9 622 aa11.36□□□□□ -0.59
USP53-207ENST00000510852 CRBNQ96SW2 442 aa11.36□□□□□ -0.59
USP53-207ENST00000510852 PDCL3Q9H2J4 239 aa11.36□□□□□ -0.59
USP53-207ENST00000510852 TYW1Q9NV66 732 aaKnown RBP11.36□□□□□ -0.59
USP53-207ENST00000510852 NDUFV2P19404 249 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 TAF11Q15544 211 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 SLC4A8Q2Y0W8 1093 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 NELL1Q92832 810 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 CHMP4CQ96CF2 233 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 TTC14Q96N46 770 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 DNAJC25Q9H1X3 360 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 CCSER2Q9H7U1 834 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 CCNL1Q9UK58 526 aaPredicted RBP11.35□□□□□ -0.59
USP53-207ENST00000510852 RABGAP1Q9Y3P9 1069 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 TJP1Q07157 1748 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 XRCC5P13010 732 aaKnown RBP11.35□□□□□ -0.59
USP53-207ENST00000510852 TRPC1P48995 793 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 KIAA2012Q0VF49 1180 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 AIMP1Q12904 312 aaKnown RBP11.35□□□□□ -0.59
USP53-207ENST00000510852 LINC00116Q8NCU8 138 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 XAGE3Q8WTP9 111 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 TMEM87BQ96K49 555 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 ZNF652Q9Y2D9 606 aa11.35□□□□□ -0.59
USP53-207ENST00000510852 ABCC4O15439 1325 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 A0A1W2PRQ8 180 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms