RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ACBD5Q5T8D3 534 aaPredicted RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 TMCO4Q5TGY1 634 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 TCERG1LQ5VWI1 586 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 GPR161Q8N6U8 529 aaKnown RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 TNIP2Q8NFZ5 429 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 CFAP36Q96G28 342 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 CSRNP2Q9H175 543 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 HELLSQ9NRZ9 838 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 FGFR1OP2Q9NVK5 253 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 MBD2Q9UBB5 411 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 EPS15L1Q9UBC2 864 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 ANGPTL2Q9UKU9 493 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 DISP2A7MBM2 1401 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 XPO1O14980 1071 aaKnown RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 DIAPH2O60879 1101 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 KRT8P05787 483 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 CUL3Q13618 768 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 PSMD6Q15008 389 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 NEUROD2Q15784 382 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 NDUFA5Q16718 116 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 KIAA0753Q2KHM9 967 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 WASHC4Q2M389 1173 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 ARMCX6Q7L4S7 300 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 RALYLQ86SE5 291 aaKnown RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 FNBP4Q8N3X1 1017 aaPredicted RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 SPZ1Q9BXG8 430 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 CTNNA3Q9UI47 895 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 LRP6O75581 1613 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 ALKQ9UM73 1620 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 BICDL2A1A5D9 508 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 TBKBP1A7MCY6 615 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 RASGRF2O14827 1237 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 AREL1O15033 823 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 HNRNPCL1O60812 293 aaKnown RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 RNF40O75150 1001 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 KRT75O95678 551 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 SLC20A2Q08357 652 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 BIRC2Q13490 618 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 TBC1D10BQ4KMP7 808 aaPredicted RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 ANKRD45Q5TZF3 282 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 LARP1Q6PKG0 1096 aaKnown RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 ANKRD13AQ8IZ07 590 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 TERB1Q8NA31 727 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 SPATA32Q96LK8 384 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 BAG1Q99933 345 aaPredicted RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 SYNCQ9H7C4 482 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 PRKRIP1Q9H875 184 aaPredicted RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 GPBP1L1Q9HC44 474 aaPredicted RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 RMND1Q9NWS8 449 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 VPS18Q9P253 973 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 MAP3K1Q13233 1512 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 KRT86O43790 486 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 TBCAO75347 108 aaKnown RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 UBE2HP62256 183 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 COG7P83436 770 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 OCA2Q04671 838 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 ZFYVE27Q5T4F4 411 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 UNC5CLQ8IV45 518 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 CCDC26Q8TAB7 109 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 PPP1R14CQ8TAE6 165 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 GSDMBQ8TAX9 411 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 STAG1Q8WVM7 1258 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 MCUR1Q96AQ8 359 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 SH3GL2Q99962 352 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 PALMDQ9NP74 551 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 TFIP11Q9UBB9 837 aaKnown RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 SEPT3Q9UH03 358 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 NUB1Q9Y5A7 615 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 ANKRD30BQ9BXX2 1392 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 SAMD9LQ8IVG5 1584 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 ARHGAP35Q9NRY4 1499 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 PNPLA6Q8IY17 1366 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 WDR91A4D1P6 747 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 IFIT2P09913 472 aaKnown RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 KIF23Q02241 960 aaPredicted RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 G3BP1Q13283 466 aaKnown RBP eCLIP4.01□□□□□ -1.77
USP53-205ENST00000509769 PRPF4BQ13523 1007 aaKnown RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 R3HDM1Q15032 1099 aaKnown RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 ESCO1Q5FWF5 840 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 SPTY2D1Q68D10 685 aaPredicted RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 FAM196AQ6ZSG2 479 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 HORMAD1Q86X24 394 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 FAM200AQ8TCP9 573 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 PPP1R14BQ96C90 147 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 CHMP6Q96FZ7 201 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 RUNDC3BQ96NL0 473 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 IWS1Q96ST2 819 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 TXLNGQ9NUQ3 528 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 NOP53Q9NZM5 478 aaKnown RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 CYP46A1Q9Y6A2 500 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 PSDA5PKW4 1024 aaPredicted RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 HCLS1P14317 486 aaPredicted RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 HSPA9P38646 679 aaKnown RBP4.01□□□□□ -1.77
USP53-205ENST00000509769 ADRM1Q16186 407 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 DENND2CQ68D51 928 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 EP400NLQ6ZTU2 488 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 TRIM22Q8IYM9 498 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 TRIM58Q8NG06 486 aa4.01□□□□□ -1.77
USP53-205ENST00000509769 CXorf38Q8TB03 319 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms