RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 ALG1L2C9J202 215 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 ICMTO60725 284 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 KIF5BP33176 963 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 KCNH2Q12809 1159 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 SF3B3Q15393 1217 aaKnown RBP4.53□□□□□ -1.68
NEDD4-209ENST00000508871 PASD1Q8IV76 773 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 TTC30BQ8N4P2 665 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 MSANTD4Q8NCY6 345 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 TRIM64A6NGJ6 449 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 TRIM64BA6NI03 449 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 XRCC5P13010 732 aaKnown RBP4.53□□□□□ -1.68
NEDD4-209ENST00000508871 SSFA2P28290 1259 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 NEXNQ0ZGT2 675 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 TCIRG1Q13488 830 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 LARGE2Q8N3Y3 721 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 USP6NLQ92738 828 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 TCHPQ9BT92 498 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 SLIT3O75094 1523 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 PNPLA6Q8IY17 1366 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 ZC3H4Q9UPT8 1303 aaKnown RBP4.53□□□□□ -1.68
NEDD4-209ENST00000508871 PEAK1Q9H792 1746 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 NBNO60934 754 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 MLLT1Q03111 559 aaPredicted RBP4.53□□□□□ -1.68
NEDD4-209ENST00000508871 SEPT6Q14141 434 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 BECN1Q14457 450 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 CCDC73Q6ZRK6 1079 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 ARFGAP3Q9NP61 516 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 DIS3Q9Y2L1 958 aaKnown RBP4.53□□□□□ -1.68
NEDD4-209ENST00000508871 PPFIA4O75335 1185 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 PRPF40AO75400 957 aaKnown RBP4.53□□□□□ -1.68
NEDD4-209ENST00000508871 ZBTB17Q13105 803 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 PAK2Q13177 524 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 SETDB1Q15047 1291 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 MLC1Q15049 377 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 IL31Q6EBC2 164 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 TTLL5Q6EMB2 1281 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 PADI6Q6TGC4 694 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 SH3TC2Q8TF17 1288 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 FERMT2Q96AC1 680 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 GBP5Q96PP8 586 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 CRISPLD2Q9H0B8 497 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 RNF39Q9H2S5 420 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 KRT84Q9NSB2 600 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 STRCP1A6NGW2 1772 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 PIK3CDO00329 1044 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 MRPS35P82673 323 aaKnown RBP4.53□□□□□ -1.68
NEDD4-209ENST00000508871 LMNB2Q03252 620 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 ALG1LQ6GMV1 187 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 FAM47EQ6ZV65 393 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 C14orf80Q86SX3 495 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 SUGP1Q8IWZ8 645 aaKnown RBP4.53□□□□□ -1.68
NEDD4-209ENST00000508871 CAMKK1Q8N5S9 505 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 TTC8Q8TAM2 541 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 E2F7Q96AV8 911 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 SLC26A6Q9BXS9 759 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 TRIM6Q9C030 488 aaPredicted RBP4.53□□□□□ -1.68
NEDD4-209ENST00000508871 TSR3Q9UJK0 312 aaKnown RBP4.53□□□□□ -1.68
NEDD4-209ENST00000508871 GJA3Q9Y6H8 435 aa4.53□□□□□ -1.68
NEDD4-209ENST00000508871 SSH2Q76I76 1423 aa4.53□□□□□ -1.69
NEDD4-209ENST00000508871 TTC21AQ8NDW8 1320 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 ADGRL3Q9HAR2 1447 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 APLP1P51693 650 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 TMPRSS15P98073 1019 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 LRMPQ12912 555 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 SYCP1Q15431 976 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 CRTC2Q53ET0 693 aaPredicted RBP4.52□□□□□ -1.69
NEDD4-209ENST00000508871 NOM1Q5C9Z4 860 aaKnown RBP4.52□□□□□ -1.69
NEDD4-209ENST00000508871 INO80BQ9C086 356 aaPredicted RBP4.52□□□□□ -1.69
NEDD4-209ENST00000508871 NUDCQ9Y266 331 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 USP31Q70CQ4 1352 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 OVOS2A0A0J9YW53 1432 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 OVOS2Q6IE36 1432 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 BICDL2A1A5D9 508 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 ALDH1L1O75891 902 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 IL33O95760 270 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 SP100P23497 879 aaPredicted RBP4.52□□□□□ -1.69
NEDD4-209ENST00000508871 MAPK10P53779 464 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 CCDC81Q6ZN84 652 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 MMS22LQ6ZRQ5 1243 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 DAAM2Q86T65 1068 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 TXNDC2Q86VQ3 553 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 PRKD2Q9BZL6 878 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 TRAK1Q9UPV9 953 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 DLG5Q8TDM6 1919 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 LMO7Q8WWI1 1683 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 STRCQ7RTU9 1775 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 WASLO00401 505 aaPredicted RBP4.52□□□□□ -1.69
NEDD4-209ENST00000508871 SLC3A2P08195 630 aaKnown RBP4.52□□□□□ -1.69
NEDD4-209ENST00000508871 MPSTP25325 297 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 POLR2FP61218 127 aaKnown RBP4.52□□□□□ -1.69
NEDD4-209ENST00000508871 GFOD2Q3B7J2 385 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 ZNF579Q8NAF0 562 aaKnown RBP4.52□□□□□ -1.69
NEDD4-209ENST00000508871 ANKRD20A12PQ8NF67 263 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 POGKQ9P215 609 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 NUB1Q9Y5A7 615 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 SNX13Q9Y5W8 968 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 VIRMAQ69YN4 1812 aaKnown RBP4.52□□□□□ -1.69
NEDD4-209ENST00000508871 ABCA3Q99758 1704 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 TRIM75PA6NK02 468 aa4.52□□□□□ -1.69
NEDD4-209ENST00000508871 TLR3O15455 904 aaKnown RBP4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms