RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 CFAP45Q9UL16 551 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 KIF3AQ9Y496 699 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 ZNF213O14771 459 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 JAK2O60674 1132 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 MBD4O95243 580 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 GYS1P13807 737 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 ADRA2BP18089 450 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 SCRN1Q12765 414 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 RBM43Q6ZSC3 357 aaKnown RBP12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 FAM84BQ96KN1 310 aaPredicted RBP12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 STRBPQ96SI9 672 aaKnown RBP12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 AGXT2Q9BYV1 514 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 TNMDQ9H2S6 317 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 GPHNQ9NQX3 736 aaPredicted RBP12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 FAM13BQ9NYF5 915 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 LRP2BPQ9P2M1 347 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 ABCF2Q9UG63 623 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 DENND2AQ9ULE3 1009 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 CAVIN4Q5BKX8 364 aa12.88□□□□□ -0.35
SH3RF1-203ENST00000508685 ATL3Q6DD88 541 aa12.88□□□□□ -0.35
SH3RF1-203ENST00000508685 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.88□□□□□ -0.35
SH3RF1-203ENST00000508685 VPS37DQ86XT2 251 aa12.88□□□□□ -0.35
SH3RF1-203ENST00000508685 ARMT1Q9H993 441 aa12.88□□□□□ -0.35
SH3RF1-203ENST00000508685 CHAF1AQ13111 956 aaPredicted RBP12.88□□□□□ -0.35
SH3RF1-203ENST00000508685 PRR5LQ6MZQ0 368 aa12.88□□□□□ -0.35
SH3RF1-203ENST00000508685 CDC37L1Q7L3B6 337 aa12.88□□□□□ -0.35
SH3RF1-203ENST00000508685 ADGRA1Q86SQ6 560 aa12.88□□□□□ -0.35
SH3RF1-203ENST00000508685 TBC1D10CQ8IV04 446 aa12.88□□□□□ -0.35
SH3RF1-203ENST00000508685 MIGA1Q8NAN2 632 aa12.88□□□□□ -0.35
SH3RF1-203ENST00000508685 NKX2-3Q8TAU0 364 aa12.88□□□□□ -0.35
SH3RF1-203ENST00000508685 EPB41L4AQ9HCS5 686 aaPredicted RBP12.88□□□□□ -0.35
SH3RF1-203ENST00000508685 STK32BQ9NY57 414 aa12.88□□□□□ -0.35
SH3RF1-203ENST00000508685 CTAGE5O15320 804 aa12.87□□□□□ -0.35
SH3RF1-203ENST00000508685 TYRO3Q06418 890 aa12.87□□□□□ -0.35
SH3RF1-203ENST00000508685 MB21D2Q8IYB1 491 aaPredicted RBP12.87□□□□□ -0.35
SH3RF1-203ENST00000508685 LCORLQ8N3X6 602 aa12.87□□□□□ -0.35
SH3RF1-203ENST00000508685 KIAA1524Q8TCG1 905 aa12.87□□□□□ -0.35
SH3RF1-203ENST00000508685 CLSTN2Q9H4D0 955 aa12.87□□□□□ -0.35
SH3RF1-203ENST00000508685 TFCP2L1Q9NZI6 479 aa12.87□□□□□ -0.35
SH3RF1-203ENST00000508685 NAP1L2Q9ULW6 460 aaPredicted RBP12.87□□□□□ -0.35
SH3RF1-203ENST00000508685 PRKAB2O43741 272 aa12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 PPFIA3O75145 1194 aa12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 ANTXR2P58335 489 aa12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 CCT2P78371 535 aaKnown RBP12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 LEO1Q8WVC0 666 aaPredicted RBP12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 TTC12Q9H892 705 aaPredicted RBP12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 NCOA5Q9HCD5 579 aaKnown RBP12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 GNL3LQ9NVN8 582 aaKnown RBP12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 PRC1O43663 620 aa12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 PFKFB2O60825 505 aa12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 RBM10P98175 930 aaKnown RBP12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 RALYLQ86SE5 291 aaKnown RBP12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 FERMT3Q86UX7 667 aa12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 TXNRD3Q86VQ6 643 aa12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 NCOA7Q8NI08 942 aa12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 DDX11Q96FC9 970 aa12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 MRVI1Q9Y6F6 885 aa12.86□□□□□ -0.35
SH3RF1-203ENST00000508685 H3BQV1 296 aa12.85□□□□□ -0.35
SH3RF1-203ENST00000508685 CTDNEP1O95476 244 aa12.85□□□□□ -0.35
SH3RF1-203ENST00000508685 HMGB2P26583 209 aaKnown RBP12.85□□□□□ -0.35
SH3RF1-203ENST00000508685 PDIA3P30101 505 aaKnown RBP12.85□□□□□ -0.35
SH3RF1-203ENST00000508685 PLCB2Q00722 1185 aa12.85□□□□□ -0.35
SH3RF1-203ENST00000508685 SLC15A2Q16348 729 aa12.85□□□□□ -0.35
SH3RF1-203ENST00000508685 IFFO2Q5TF58 517 aa12.85□□□□□ -0.35
SH3RF1-203ENST00000508685 NAA16Q6N069 864 aaPredicted RBP12.85□□□□□ -0.35
SH3RF1-203ENST00000508685 IFNL3Q8IZI9 196 aa12.85□□□□□ -0.35
SH3RF1-203ENST00000508685 INCENPQ9NQS7 918 aa12.85□□□□□ -0.35
SH3RF1-203ENST00000508685 DACT1Q9NYF0 836 aa12.85□□□□□ -0.35
SH3RF1-203ENST00000508685 RAI14Q9P0K7 980 aa12.85□□□□□ -0.35
SH3RF1-203ENST00000508685 GSG1L2A8MUP6 293 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 PATL2C9JE40 543 aaKnown RBP12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 CYP7A1P22680 504 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 NEDD4P46934 1319 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 FBXO33Q7Z6M2 555 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 SMARCC2Q8TAQ2 1214 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 ZNF384Q8TF68 577 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 ZNF830Q96NB3 372 aaPredicted RBP12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 ANKRD2Q9GZV1 360 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 NAPBQ9H115 298 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 SERPINB2P05120 415 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 LIG1P18858 919 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 DDR1Q08345 913 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 GRAPQ13588 217 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 FAM173BQ6P4H8 233 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 FBXL16Q8N461 479 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 NSUN7Q8NE18 718 aaKnown RBP12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 TDRD7Q8NHU6 1098 aaKnown RBP12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 GRAPLQ8TC17 118 aaPredicted RBP12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 ANKIB1Q9P2G1 1089 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 JAG2Q9Y219 1238 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 SLC4A4Q9Y6R1 1079 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 CACNA1SQ13698 1873 aa12.84□□□□□ -0.35
SH3RF1-203ENST00000508685 PNPLA7Q6ZV29 1317 aa12.83□□□□□ -0.36
SH3RF1-203ENST00000508685 PTPDC1A2A3K4 754 aa12.83□□□□□ -0.36
SH3RF1-203ENST00000508685 HIBADHP31937 336 aaKnown RBP12.83□□□□□ -0.36
SH3RF1-203ENST00000508685 CTDSPL2Q05D32 466 aa12.83□□□□□ -0.36
SH3RF1-203ENST00000508685 TRDNQ13061 729 aa12.83□□□□□ -0.36
SH3RF1-203ENST00000508685 RESTQ13127 1097 aa12.83□□□□□ -0.36
SH3RF1-203ENST00000508685 ZNF827Q17R98 1081 aa12.83□□□□□ -0.36
SH3RF1-203ENST00000508685 TPRNQ4KMQ1 711 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms