RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 USP40Q9NVE5 1235 aa9.91□□□□□ -0.82
LIMCH1-206ENST00000505705 AATFQ9NY61 560 aaKnown RBP eCLIP9.91□□□□□ -0.82
LIMCH1-206ENST00000505705 DAGLAQ9Y4D2 1042 aa9.91□□□□□ -0.82
LIMCH1-206ENST00000505705 PCDHAC2Q9Y5I4 1007 aa9.91□□□□□ -0.82
LIMCH1-206ENST00000505705 AKAP11Q9UKA4 1901 aa9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 MAGEB6P1A0A0J9YX57 407 aa9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 SPDYE2BA6NHP3 402 aa9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 HIP1O00291 1037 aa9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 SPDYE6P0CI01 402 aa9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 GSPT1P15170 499 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 PLCG2P16885 1265 aa9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 SDSP20132 328 aa9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 ADD2P35612 726 aa9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 HIRAP54198 1017 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 UBE3CQ15386 1083 aa9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 ANGEL2Q5VTE6 544 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 MTMR14Q8NCE2 650 aa9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 AIDAQ96BJ3 306 aa9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 FAM163AQ96GL9 167 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 DIAPH3Q9NSV4 1193 aa9.9□□□□□ -0.82
LIMCH1-206ENST00000505705 SCN4AP35499 1836 aa9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 GPR75-ASB3A0A0A6YYF3 556 aa9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 TCP10L2B9ZVM9 353 aa9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 USP5P45974 858 aa9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 TNNI2P48788 182 aa9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 PICALMQ13492 652 aa9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 SLFNL1Q499Z3 407 aa9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 APOBEC3HQ6NTF7 200 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 CASC1Q6TDU7 716 aa9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 LDHDQ86WU2 507 aa9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 CERS3Q8IU89 383 aa9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 SULF1Q8IWU6 871 aa9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 ZC3H15Q8WU90 426 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 APPBP2Q92624 585 aa9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 GGA3Q9NZ52 723 aa9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 ZNF70Q9UC06 446 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-206ENST00000505705 GAKO14976 1311 aa9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 KIF3CO14782 793 aa9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 CHGBP05060 677 aa9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 POTEIP0CG38 1075 aa9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 POTEJP0CG39 1038 aa9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 CACNB3P54284 484 aa9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 DYNLL1P63167 89 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 TNFAIP1Q13829 316 aa9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 MAP1SQ66K74 1059 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 CHADLQ6NUI6 762 aa9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 CDC42EP5Q6NZY7 148 aa9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 CWC27Q6UX04 472 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 ADGRA1Q86SQ6 560 aa9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 TEX11Q8IYF3 940 aa9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 ZNF384Q8TF68 577 aa9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 PUS7LQ9H0K6 701 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 SCAF8Q9UPN6 1271 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-206ENST00000505705 ASTN2O75129 1339 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 TCRBV5S4A2TA0A5A2 114 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 TOMM70O94826 608 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 MBD4O95243 580 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 APPP05067 770 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 TCP10Q12799 353 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 SPDYE2Q495Y8 402 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 MCMDC2Q4G0Z9 681 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 BMP2KLQ5H9B9 411 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 CDC37L1Q7L3B6 337 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 KRT26Q7Z3Y9 468 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 USP48Q86UV5 1035 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 APOBEC3FQ8IUX4 373 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 ZSCAN29Q8IWY8 852 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 REM2Q8IYK8 340 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 SMC1BQ8NDV3 1235 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 SH3RF3Q8TEJ3 882 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 TGFBRAP1Q8WUH2 860 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 RUFY2Q8WXA3 655 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 OSBP2Q969R2 916 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 DDRGK1Q96HY6 314 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 ZBED3Q96IU2 234 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 CRNKL1Q9BZJ0 848 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 ARMT1Q9H993 441 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 HELLSQ9NRZ9 838 aa9.87□□□□□ -0.83
LIMCH1-206ENST00000505705 ZNF646O15015 1829 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-206ENST00000505705 MYH2Q9UKX2 1941 aa9.86□□□□□ -0.83
LIMCH1-206ENST00000505705 MFAP1P55081 439 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-206ENST00000505705 PPP4CP60510 307 aa9.86□□□□□ -0.83
LIMCH1-206ENST00000505705 NMIQ13287 307 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-206ENST00000505705 ZMYM1Q5SVZ6 1142 aa9.86□□□□□ -0.83
LIMCH1-206ENST00000505705 TICAM2Q86XR7 235 aa9.86□□□□□ -0.83
LIMCH1-206ENST00000505705 LCORLQ8N3X6 602 aa9.86□□□□□ -0.83
LIMCH1-206ENST00000505705 FAM227BQ96M60 508 aa9.86□□□□□ -0.83
LIMCH1-206ENST00000505705 SEC62Q99442 399 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-206ENST00000505705 DEFB129Q9H1M3 183 aa9.86□□□□□ -0.83
LIMCH1-206ENST00000505705 ZNF408Q9H9D4 720 aa9.86□□□□□ -0.83
LIMCH1-206ENST00000505705 SLC4A4Q9Y6R1 1079 aa9.86□□□□□ -0.83
LIMCH1-206ENST00000505705 PITPNM2Q9BZ72 1349 aa9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 ADM5C9JUS6 153 aa9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 M0R2C6 588 aa9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 GPAA1O43292 621 aa9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 GNAT2P19087 354 aa9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 NF2P35240 595 aa9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 RHBDL3P58872 404 aa9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 RASA3Q14644 834 aa9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 PRAMEF18Q5VWM3 479 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms