RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SETD5Q9C0A6 1442 aa6.32□□□□□ -1.4
USP54-217ENST00000498213 ARHGAP23Q9P227 1491 aa6.31□□□□□ -1.4
USP54-217ENST00000498213 PDGFAP04085 211 aa6.31□□□□□ -1.4
USP54-217ENST00000498213 ZNF211Q13398 564 aaPredicted RBP6.31□□□□□ -1.4
USP54-217ENST00000498213 IL22RA1Q8N6P7 574 aa6.31□□□□□ -1.4
USP54-217ENST00000498213 ANO2Q9NQ90 1003 aa6.31□□□□□ -1.4
USP54-217ENST00000498213 MAST1Q9Y2H9 1570 aa6.31□□□□□ -1.4
USP54-217ENST00000498213 DHX29Q7Z478 1369 aaKnown RBP6.31□□□□□ -1.4
USP54-217ENST00000498213 ABCC3O15438 1527 aa6.3□□□□□ -1.4
USP54-217ENST00000498213 ADGBQ8N7X0 1667 aa6.3□□□□□ -1.4
USP54-217ENST00000498213 NKTRP30414 1462 aaKnown RBP6.3□□□□□ -1.4
USP54-217ENST00000498213 USP5P45974 858 aa6.3□□□□□ -1.4
USP54-217ENST00000498213 IREB2P48200 963 aaKnown RBP6.3□□□□□ -1.4
USP54-217ENST00000498213 FKBP4Q02790 459 aaKnown RBP eCLIP6.3□□□□□ -1.4
USP54-217ENST00000498213 EZH2Q15910 746 aaKnown RBP6.3□□□□□ -1.4
USP54-217ENST00000498213 GRIK5Q16478 980 aa6.3□□□□□ -1.4
USP54-217ENST00000498213 COL13A1Q5TAT6 717 aaPredicted RBP6.3□□□□□ -1.4
USP54-217ENST00000498213 CEP135Q66GS9 1140 aa6.3□□□□□ -1.4
USP54-217ENST00000498213 CACTIN-AS1Q8N1I8 211 aa6.3□□□□□ -1.4
USP54-217ENST00000498213 DCAF11Q8TEB1 546 aa6.3□□□□□ -1.4
USP54-217ENST00000498213 WFDC12Q8WWY7 111 aa6.3□□□□□ -1.4
USP54-217ENST00000498213 TMEM63CQ9P1W3 806 aa6.3□□□□□ -1.4
USP54-217ENST00000498213 POLIQ9UNA4 740 aa6.3□□□□□ -1.4
USP54-217ENST00000498213 TMEM2Q9UHN6 1383 aa6.3□□□□□ -1.4
USP54-217ENST00000498213 KDM5AP29375 1690 aaKnown RBP6.3□□□□□ -1.4
USP54-217ENST00000498213 CAMTA1Q9Y6Y1 1673 aa6.3□□□□□ -1.4
USP54-217ENST00000498213 CES1P23141 567 aa6.29□□□□□ -1.4
USP54-217ENST00000498213 PRELPP51888 382 aa6.29□□□□□ -1.4
USP54-217ENST00000498213 ATP11AP98196 1134 aa6.29□□□□□ -1.4
USP54-217ENST00000498213 EHHADHQ08426 723 aa6.29□□□□□ -1.4
USP54-217ENST00000498213 KRT27Q7Z3Y8 459 aa6.29□□□□□ -1.4
USP54-217ENST00000498213 FBXO11Q86XK2 927 aa6.29□□□□□ -1.4
USP54-217ENST00000498213 GLYCTKQ8IVS8 523 aa6.29□□□□□ -1.4
USP54-217ENST00000498213 LACRTQ9GZZ8 138 aa6.29□□□□□ -1.4
USP54-217ENST00000498213 MUC3BQ9H195 1237 aa6.29□□□□□ -1.4
USP54-217ENST00000498213 SPON1Q9HCB6 807 aa6.29□□□□□ -1.4
USP54-217ENST00000498213 KANSL3Q9P2N6 904 aa6.29□□□□□ -1.4
USP54-217ENST00000498213 TRIM33Q9UPN9 1127 aa6.29□□□□□ -1.4
USP54-217ENST00000498213 SLIT1O75093 1534 aa6.29□□□□□ -1.4
USP54-217ENST00000498213 ERVK-7P63135 1459 aa6.28□□□□□ -1.4
USP54-217ENST00000498213 UTRNP46939 3433 aa6.28□□□□□ -1.4
USP54-217ENST00000498213 H3BRB1 525 aa6.28□□□□□ -1.4
USP54-217ENST00000498213 CYP2E1P05181 493 aaPredicted RBP6.28□□□□□ -1.4
USP54-217ENST00000498213 NOS3P29474 1203 aa6.28□□□□□ -1.4
USP54-217ENST00000498213 PHLDB3Q6NSJ2 640 aa6.28□□□□□ -1.4
USP54-217ENST00000498213 RETREG2Q8NC44 543 aa6.28□□□□□ -1.4
USP54-217ENST00000498213 KRTAP9-9Q9BYP9 154 aa6.28□□□□□ -1.4
USP54-217ENST00000498213 KRTAP9-4Q9BYQ2 154 aa6.28□□□□□ -1.4
USP54-217ENST00000498213 TUT1Q9H6E5 874 aaKnown RBP6.28□□□□□ -1.4
USP54-217ENST00000498213 SRA1Q9HD15 236 aaKnown RBP6.28□□□□□ -1.4
USP54-217ENST00000498213 RNF112Q9ULX5 631 aa6.28□□□□□ -1.4
USP54-217ENST00000498213 PPME1Q9Y570 386 aa6.28□□□□□ -1.4
USP54-217ENST00000498213 NINLQ9Y2I6 1382 aa6.28□□□□□ -1.4
USP54-217ENST00000498213 PREX2Q70Z35 1606 aa6.28□□□□□ -1.4
USP54-217ENST00000498213 CAMSAP2Q08AD1 1489 aa6.28□□□□□ -1.4
USP54-217ENST00000498213 INO80Q9ULG1 1556 aaPredicted RBP6.27□□□□□ -1.41
USP54-217ENST00000498213 A6NHS1 94 aa6.27□□□□□ -1.41
USP54-217ENST00000498213 KCNQ2O43526 872 aa6.27□□□□□ -1.41
USP54-217ENST00000498213 PHACTR2O75167 634 aa6.27□□□□□ -1.41
USP54-217ENST00000498213 FAM117BQ6P1L5 589 aa6.27□□□□□ -1.41
USP54-217ENST00000498213 MAP4K3Q8IVH8 894 aa6.27□□□□□ -1.41
USP54-217ENST00000498213 PMEPA1Q969W9 287 aa6.27□□□□□ -1.41
USP54-217ENST00000498213 RASSF4Q9H2L5 321 aa6.27□□□□□ -1.41
USP54-217ENST00000498213 CFDP1Q9UEE9 299 aaPredicted RBP6.27□□□□□ -1.41
USP54-217ENST00000498213 EGFL7Q9UHF1 273 aa6.27□□□□□ -1.41
USP54-217ENST00000498213 UBR1Q8IWV7 1749 aa6.27□□□□□ -1.41
USP54-217ENST00000498213 ZNF644Q9H582 1327 aaPredicted RBP6.26□□□□□ -1.41
USP54-217ENST00000498213 ASXL1Q8IXJ9 1541 aa6.26□□□□□ -1.41
USP54-217ENST00000498213 KIF4AO95239 1232 aa6.26□□□□□ -1.41
USP54-217ENST00000498213 NPR3P17342 541 aa6.26□□□□□ -1.41
USP54-217ENST00000498213 PTPRAP18433 802 aa6.26□□□□□ -1.41
USP54-217ENST00000498213 CDC27P30260 824 aa6.26□□□□□ -1.41
USP54-217ENST00000498213 CABP4P57796 275 aa6.26□□□□□ -1.41
USP54-217ENST00000498213 IGF2-ASQ6U949 168 aa6.26□□□□□ -1.41
USP54-217ENST00000498213 XKR5Q6UX68 686 aa6.26□□□□□ -1.41
USP54-217ENST00000498213 C1orf127Q8N9H9 656 aa6.26□□□□□ -1.41
USP54-217ENST00000498213 SNX29Q8TEQ0 813 aa6.26□□□□□ -1.41
USP54-217ENST00000498213 PBX4Q9BYU1 374 aa6.26□□□□□ -1.41
USP54-217ENST00000498213 GGNBP2Q9H3C7 697 aa6.26□□□□□ -1.41
USP54-217ENST00000498213 CNTN3Q9P232 1028 aa6.26□□□□□ -1.41
USP54-217ENST00000498213 CCDC9Q9Y3X0 531 aaKnown RBP6.26□□□□□ -1.41
USP54-217ENST00000498213 RALGAPBQ86X10 1494 aa6.26□□□□□ -1.41
USP54-217ENST00000498213 HSPA6P17066 643 aa6.25□□□□□ -1.41
USP54-217ENST00000498213 CDC25BP30305 580 aa6.25□□□□□ -1.41
USP54-217ENST00000498213 SERPINB4P48594 390 aa6.25□□□□□ -1.41
USP54-217ENST00000498213 UNC5CLQ8IV45 518 aa6.25□□□□□ -1.41
USP54-217ENST00000498213 MEGF10Q96KG7 1140 aa6.25□□□□□ -1.41
USP54-217ENST00000498213 BRPF3Q9ULD4 1205 aa6.25□□□□□ -1.41
USP54-217ENST00000498213 ARHGAP35Q9NRY4 1499 aa6.25□□□□□ -1.41
USP54-217ENST00000498213 TET3O43151 1660 aa6.25□□□□□ -1.41
USP54-217ENST00000498213 PTCH1Q13635 1447 aa6.25□□□□□ -1.41
USP54-217ENST00000498213 KIAA1107Q9UPP5 1409 aa6.25□□□□□ -1.41
USP54-217ENST00000498213 UNC13BO14795 1591 aa6.24□□□□□ -1.41
USP54-217ENST00000498213 CCDC18Q5T9S5 1454 aa6.24□□□□□ -1.41
USP54-217ENST00000498213 LINC01387J3KSC0 135 aa6.24□□□□□ -1.41
USP54-217ENST00000498213 NDUFB5O43674 189 aa6.24□□□□□ -1.41
USP54-217ENST00000498213 ICMTO60725 284 aa6.24□□□□□ -1.41
USP54-217ENST00000498213 DEAF1O75398 565 aaPredicted RBP6.24□□□□□ -1.41
USP54-217ENST00000498213 TXNDC11Q6PKC3 985 aa6.24□□□□□ -1.41
USP54-217ENST00000498213 PRR23CQ6ZRP0 262 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 201.7 ms