RNA–Protein interactions for RNA: ENST00000497440.5

SHROOM3-210, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 611 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-210ENST00000497440 PAXIP1Q6ZW49 1069 aaPredicted RBP13.44□□□□□ -0.26
SHROOM3-210ENST00000497440 SPATA5Q8NB90 893 aa13.44□□□□□ -0.26
SHROOM3-210ENST00000497440 FAM151AQ8WW52 585 aa13.44□□□□□ -0.26
SHROOM3-210ENST00000497440 NSUN4Q96CB9 384 aaKnown RBP13.44□□□□□ -0.26
SHROOM3-210ENST00000497440 NEUROD6Q96NK8 337 aa13.44□□□□□ -0.26
SHROOM3-210ENST00000497440 DBNDD2Q9BQY9 259 aa13.44□□□□□ -0.26
SHROOM3-210ENST00000497440 FAM198AQ9UFP1 575 aa13.44□□□□□ -0.26
SHROOM3-210ENST00000497440 ANGEL1Q9UNK9 670 aaKnown RBP13.44□□□□□ -0.26
SHROOM3-210ENST00000497440 FZD1Q9UP38 647 aa13.44□□□□□ -0.26
SHROOM3-210ENST00000497440 HTTP42858 3142 aa13.44□□□□□ -0.26
SHROOM3-210ENST00000497440 TCP10L2B9ZVM9 353 aa13.43□□□□□ -0.26
SHROOM3-210ENST00000497440 MAP4K4O95819 1239 aaPredicted RBP13.43□□□□□ -0.26
SHROOM3-210ENST00000497440 UQCRFS1P1P0C7P4 283 aa13.43□□□□□ -0.26
SHROOM3-210ENST00000497440 ZBTB48P10074 688 aaPredicted RBP13.43□□□□□ -0.26
SHROOM3-210ENST00000497440 TNNI2P48788 182 aa13.43□□□□□ -0.26
SHROOM3-210ENST00000497440 RHBDL3P58872 404 aa13.43□□□□□ -0.26
SHROOM3-210ENST00000497440 SPTY2D1Q68D10 685 aaPredicted RBP13.43□□□□□ -0.26
SHROOM3-210ENST00000497440 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.43□□□□□ -0.26
SHROOM3-210ENST00000497440 CHMP4BQ9H444 224 aaKnown RBP13.43□□□□□ -0.26
SHROOM3-210ENST00000497440 RNF186Q9NXI6 227 aa13.43□□□□□ -0.26
SHROOM3-210ENST00000497440 ZNF112Q9UJU3 913 aa13.43□□□□□ -0.26
SHROOM3-210ENST00000497440 ATRNL1Q5VV63 1379 aa13.43□□□□□ -0.26
SHROOM3-210ENST00000497440 WDHD1O75717 1129 aaPredicted RBP13.42□□□□□ -0.26
SHROOM3-210ENST00000497440 CACNB3P54284 484 aa13.42□□□□□ -0.26
SHROOM3-210ENST00000497440 INHBEP58166 350 aa13.42□□□□□ -0.26
SHROOM3-210ENST00000497440 MECOMQ03112 1051 aa13.42□□□□□ -0.26
SHROOM3-210ENST00000497440 NFIAQ12857 509 aa13.42□□□□□ -0.26
SHROOM3-210ENST00000497440 GRM1Q13255 1194 aa13.42□□□□□ -0.26
SHROOM3-210ENST00000497440 PI16Q6UXB8 463 aa13.42□□□□□ -0.26
SHROOM3-210ENST00000497440 ANKRD13AQ8IZ07 590 aa13.42□□□□□ -0.26
SHROOM3-210ENST00000497440 CLMNQ96JQ2 1002 aa13.42□□□□□ -0.26
SHROOM3-210ENST00000497440 MYH2Q9UKX2 1941 aa13.42□□□□□ -0.26
SHROOM3-210ENST00000497440 ENTPD3O75355 529 aa13.41□□□□□ -0.26
SHROOM3-210ENST00000497440 CYP2E1P05181 493 aaPredicted RBP13.41□□□□□ -0.26
SHROOM3-210ENST00000497440 GJA5P36382 358 aa13.41□□□□□ -0.26
SHROOM3-210ENST00000497440 IREB2P48200 963 aaKnown RBP13.41□□□□□ -0.26
SHROOM3-210ENST00000497440 PPP4CP60510 307 aa13.41□□□□□ -0.26
SHROOM3-210ENST00000497440 HSP90AB4PQ58FF6 505 aa13.41□□□□□ -0.26
SHROOM3-210ENST00000497440 ERC1Q8IUD2 1116 aa13.41□□□□□ -0.26
SHROOM3-210ENST00000497440 BEGAINQ9BUH8 593 aa13.41□□□□□ -0.26
SHROOM3-210ENST00000497440 CENPFP49454 3210 aa13.41□□□□□ -0.26
SHROOM3-210ENST00000497440 MROH7-TTC4A0A0A0MT08 1334 aa13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 MAP3K9P80192 1104 aa13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 TTLL12Q14166 644 aaPredicted RBP13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 CCDC158Q5M9N0 1113 aa13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 TBC1D9Q6ZT07 1266 aa13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 ERICH6Q7L0X2 663 aa13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 ZFPM1Q8IX07 1006 aa13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 SLF2Q8IX21 1173 aa13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 RHPN1Q8TCX5 695 aa13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 SLC10A4Q96EP9 437 aa13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 WNK4Q96J92 1243 aa13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 MS4A4AQ96JQ5 239 aa13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 USP40Q9NVE5 1235 aa13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 TLR7Q9NYK1 1049 aaKnown RBP13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 ABCF2Q9UG63 623 aa13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 EXOC6BQ9Y2D4 811 aa13.4□□□□□ -0.26
SHROOM3-210ENST00000497440 CASP8AP2Q9UKL3 1982 aa13.4□□□□□ -0.27
SHROOM3-210ENST00000497440 RAB11FIP3O75154 756 aa13.39□□□□□ -0.27
SHROOM3-210ENST00000497440 PRKG1Q13976 671 aa13.39□□□□□ -0.27
SHROOM3-210ENST00000497440 TMED8Q6PL24 325 aaPredicted RBP13.39□□□□□ -0.27
SHROOM3-210ENST00000497440 SH3BP5LQ7L8J4 393 aa13.39□□□□□ -0.27
SHROOM3-210ENST00000497440 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.39□□□□□ -0.27
SHROOM3-210ENST00000497440 HOOK2Q96ED9 719 aa13.39□□□□□ -0.27
SHROOM3-210ENST00000497440 TMOD2Q9NZR1 351 aa13.39□□□□□ -0.27
SHROOM3-210ENST00000497440 OTOFQ9HC10 1997 aa13.39□□□□□ -0.27
SHROOM3-210ENST00000497440 MANSC4A6NHS7 340 aaPredicted RBP13.38□□□□□ -0.27
SHROOM3-210ENST00000497440 PHF20L1A8MW92 1017 aa13.38□□□□□ -0.27
SHROOM3-210ENST00000497440 HMMRO75330 724 aa13.38□□□□□ -0.27
SHROOM3-210ENST00000497440 TRPA1O75762 1119 aa13.38□□□□□ -0.27
SHROOM3-210ENST00000497440 LDHCP07864 332 aa13.38□□□□□ -0.27
SHROOM3-210ENST00000497440 VGLL4Q14135 290 aa13.38□□□□□ -0.27
SHROOM3-210ENST00000497440 GORABQ5T7V8 394 aa13.38□□□□□ -0.27
SHROOM3-210ENST00000497440 TNS4Q8IZW8 715 aa13.38□□□□□ -0.27
SHROOM3-210ENST00000497440 KIF1BPQ96EK5 621 aa13.38□□□□□ -0.27
SHROOM3-210ENST00000497440 CCDC8Q9H0W5 538 aaPredicted RBP13.38□□□□□ -0.27
SHROOM3-210ENST00000497440 DDX4Q9NQI0 724 aaKnown RBP13.38□□□□□ -0.27
SHROOM3-210ENST00000497440 COL2A1P02458 1487 aaPredicted RBP13.37□□□□□ -0.27
SHROOM3-210ENST00000497440 SPDYE5A6NIY4 337 aa13.37□□□□□ -0.27
SHROOM3-210ENST00000497440 TBC1D12O60347 775 aa13.37□□□□□ -0.27
SHROOM3-210ENST00000497440 GSTO1P78417 241 aa13.37□□□□□ -0.27
SHROOM3-210ENST00000497440 SREBF2Q12772 1141 aa13.37□□□□□ -0.27
SHROOM3-210ENST00000497440 OS9Q13438 667 aaPredicted RBP13.37□□□□□ -0.27
SHROOM3-210ENST00000497440 PTPN18Q99952 460 aa13.37□□□□□ -0.27
SHROOM3-210ENST00000497440 TSKSQ9UJT2 592 aa13.37□□□□□ -0.27
SHROOM3-210ENST00000497440 SNCAIPQ9Y6H5 919 aa13.37□□□□□ -0.27
SHROOM3-210ENST00000497440 MYO5AQ9Y4I1 1855 aaKnown RBP13.36□□□□□ -0.27
SHROOM3-210ENST00000497440 BTDP43251 543 aa13.36□□□□□ -0.27
SHROOM3-210ENST00000497440 ZAP70P43403 619 aa13.36□□□□□ -0.27
SHROOM3-210ENST00000497440 RGS3P49796 1198 aa13.36□□□□□ -0.27
SHROOM3-210ENST00000497440 TTC39AQ5SRH9 613 aa13.36□□□□□ -0.27
SHROOM3-210ENST00000497440 NOL9Q5SY16 702 aaKnown RBP13.36□□□□□ -0.27
SHROOM3-210ENST00000497440 DCAF15Q66K64 600 aa13.36□□□□□ -0.27
SHROOM3-210ENST00000497440 METTL16Q86W50 562 aaKnown RBP13.36□□□□□ -0.27
SHROOM3-210ENST00000497440 DZIP1Q86YF9 867 aaKnown RBP13.36□□□□□ -0.27
SHROOM3-210ENST00000497440 DCTPP1Q9H773 170 aa13.36□□□□□ -0.27
SHROOM3-210ENST00000497440 PIH1D3Q9NQM4 214 aaKnown RBP13.36□□□□□ -0.27
SHROOM3-210ENST00000497440 SNRKQ9NRH2 765 aa13.36□□□□□ -0.27
SHROOM3-210ENST00000497440 BRCA2P51587 3418 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms