RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 CAMTA1Q9Y6Y1 1673 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 ARHGAP23Q9P227 1491 aa11.1□□□□□ -0.63
SYNE1-230ENST00000495090 CCDC175P0C221 793 aa11.1□□□□□ -0.63
SYNE1-230ENST00000495090 C10orf67Q8IYJ2 551 aa11.1□□□□□ -0.63
SYNE1-230ENST00000495090 PANX2Q96RD6 677 aa11.1□□□□□ -0.63
SYNE1-230ENST00000495090 GBP3Q9H0R5 595 aa11.1□□□□□ -0.63
SYNE1-230ENST00000495090 FANCLQ9NW38 375 aa11.1□□□□□ -0.63
SYNE1-230ENST00000495090 DACH1Q9UI36 760 aa11.1□□□□□ -0.63
SYNE1-230ENST00000495090 LCMT1Q9UIC8 334 aa11.1□□□□□ -0.63
SYNE1-230ENST00000495090 HOOK1Q9UJC3 728 aaKnown RBP11.1□□□□□ -0.63
SYNE1-230ENST00000495090 CDC23Q9UJX2 597 aa11.1□□□□□ -0.63
SYNE1-230ENST00000495090 MAST3O60307 1309 aa11.1□□□□□ -0.63
SYNE1-230ENST00000495090 KIF28PB7ZC32 967 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 CHGBP05060 677 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 MAGEA9P43362 315 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 PTPAQ15257 358 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 CCDC102BQ68D86 513 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 SHC4Q6S5L8 630 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 TOGARAM2Q6ZUX3 1019 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 ARHGEF25Q86VW2 580 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 ENOX1Q8TC92 643 aaKnown RBP11.09□□□□□ -0.63
SYNE1-230ENST00000495090 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.09□□□□□ -0.63
SYNE1-230ENST00000495090 CCDC12Q8WUD4 166 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-230ENST00000495090 ANKZF1Q9H8Y5 726 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 BRMS1Q9HCU9 246 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 L1RE1Q9UN81 338 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 HPS5Q9UPZ3 1129 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 C4AP0C0L4 1744 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 C4BP0C0L5 1744 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 A0A1B0GUL7 405 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 TRIM66O15016 1216 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 IRX3P78415 501 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-230ENST00000495090 MLECQ14165 292 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 CT47A1Q5JQC4 288 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-230ENST00000495090 NT5DC1Q5TFE4 455 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 METTL16Q86W50 562 aaKnown RBP11.09□□□□□ -0.63
SYNE1-230ENST00000495090 TRIML1Q8N9V2 468 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 MLKLQ8NB16 471 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 FAM71BQ8TC56 605 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 MED4Q9NPJ6 270 aa11.09□□□□□ -0.63
SYNE1-230ENST00000495090 GOLGA8BA8MQT2 603 aa11.08□□□□□ -0.64
SYNE1-230ENST00000495090 CPLX1O14810 134 aa11.08□□□□□ -0.64
SYNE1-230ENST00000495090 RNF113AO15541 343 aaKnown RBP11.08□□□□□ -0.64
SYNE1-230ENST00000495090 PNOCQ13519 176 aa11.08□□□□□ -0.64
SYNE1-230ENST00000495090 OTUD7BQ6GQQ9 843 aa11.08□□□□□ -0.64
SYNE1-230ENST00000495090 NUTM2AQ8IVF1 878 aaPredicted RBP11.08□□□□□ -0.64
SYNE1-230ENST00000495090 MB21D2Q8IYB1 491 aaPredicted RBP11.08□□□□□ -0.64
SYNE1-230ENST00000495090 FAM177A1Q8N128 213 aaPredicted RBP11.08□□□□□ -0.64
SYNE1-230ENST00000495090 KCNH5Q8NCM2 988 aa11.08□□□□□ -0.64
SYNE1-230ENST00000495090 ACBD3Q9H3P7 528 aa11.08□□□□□ -0.64
SYNE1-230ENST00000495090 PDE11AQ9HCR9 933 aa11.08□□□□□ -0.64
SYNE1-230ENST00000495090 FBXO3Q9UK99 471 aa11.08□□□□□ -0.64
SYNE1-230ENST00000495090 NDUFB9Q9Y6M9 179 aa11.08□□□□□ -0.64
SYNE1-230ENST00000495090 RGPD2P0DJD1 1756 aa11.08□□□□□ -0.64
SYNE1-230ENST00000495090 KLF18A0A0U1RQI7 1052 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 PRAMEF22A3QJZ6 481 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 GOLIM4O00461 696 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 KIF5CO60282 957 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 GOLGA8FQ08AF8 430 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 GOLGA8DPQ0D2H9 430 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 AIMP1Q12904 312 aaKnown RBP11.07□□□□□ -0.64
SYNE1-230ENST00000495090 IMMTQ16891 758 aaKnown RBP11.07□□□□□ -0.64
SYNE1-230ENST00000495090 ICE2Q659A1 982 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 MAP3K14Q99558 947 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 MYD88Q99836 296 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 RAI14Q9P0K7 980 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 VPS18Q9P253 973 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 PCDHA5Q9Y5H7 936 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 EID1Q9Y6B2 187 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 CPDO75976 1380 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 C5P01031 1676 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 NWD2Q9ULI1 1742 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 CDKL5O76039 1030 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 MDM2Q00987 491 aaPredicted RBP11.07□□□□□ -0.64
SYNE1-230ENST00000495090 WHAMMP3Q1A5X7 153 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 ISM2Q6H9L7 571 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 PLCD3Q8N3E9 789 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 CNNM3Q8NE01 707 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 VIPAS39Q9H9C1 493 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 ADGRG1Q9Y653 693 aa11.07□□□□□ -0.64
SYNE1-230ENST00000495090 A0A1B0GTH6 734 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 AKR1B15C9JRZ8 316 aaPredicted RBP11.06□□□□□ -0.64
SYNE1-230ENST00000495090 PRC1O43663 620 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 ZFYP08048 801 aaPredicted RBP11.06□□□□□ -0.64
SYNE1-230ENST00000495090 BMP6P22004 513 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 FECHP22830 423 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 MARCKSP29966 332 aaPredicted RBP11.06□□□□□ -0.64
SYNE1-230ENST00000495090 SARSP49591 514 aaKnown RBP11.06□□□□□ -0.64
SYNE1-230ENST00000495090 GYS2P54840 703 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 PIP4K2BP78356 416 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 NR1I3Q14994 352 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 CHST3Q7LGC8 479 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 C14orf37Q86TY3 774 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 VPS37DQ86XT2 251 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 FOXP4Q8IVH2 680 aaPredicted RBP11.06□□□□□ -0.64
SYNE1-230ENST00000495090 PDILTQ8N807 584 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 XAGE3Q8WTP9 111 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 PPM1EQ8WY54 764 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 SLC26A8Q96RN1 970 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 MRPL44Q9H9J2 332 aaKnown RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms