RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 RPS8P62241 208 aaKnown RBP12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 DYNLL1P63167 89 aaKnown RBP12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 UFL1O94874 794 aa12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 BRD1O95696 1058 aa12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 IL6STP40189 918 aaPredicted RBP12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 IQCA1Q86XH1 822 aa12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 CELF1Q92879 486 aaKnown RBP12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 ZDHHC9Q9Y397 364 aa12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 URI1O94763 535 aaPredicted RBP12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 ZFYP08048 801 aaPredicted RBP12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 USP8P40818 1118 aa12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 UBE2HP62256 183 aa12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 MTX1Q13505 466 aa12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 RASGRF1Q13972 1273 aa12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 SCAND2PQ9GZW5 306 aaPredicted RBP12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 DNAJC25Q9H1X3 360 aa12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 ZSWIM6Q9HCJ5 1215 aa12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 AOX1Q06278 1338 aa12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 NECTIN1Q15223 517 aa12.35□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 KCNJ14Q9UNX9 436 aa12.35□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 SLU7O95391 586 aaKnown RBP12.35□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 SCRN1Q12765 414 aa12.35□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 NAT10Q9H0A0 1025 aaKnown RBP12.35□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 APBA3O96018 575 aa12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 KRBA2Q6ZNG9 492 aa12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 LUZP1Q86V48 1076 aa12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 SEPT12Q8IYM1 358 aa12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 ZBTB9Q96C00 473 aa12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 INTS4Q96HW7 963 aaKnown RBP12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 SLC4A9Q96Q91 983 aa12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 HELLSQ9NRZ9 838 aa12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 SLC3A2P08195 630 aaKnown RBP12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 HIBADHP31937 336 aaKnown RBP12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 IRX5P78411 483 aaPredicted RBP12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 TBC1D9BQ66K14 1250 aa12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 ZNF444Q8N0Y2 327 aaPredicted RBP12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 MTMR6Q9Y217 621 aa12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 CYP2E1P05181 493 aaPredicted RBP12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 LIG1P18858 919 aa12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 SSRP1Q08945 709 aaKnown RBP12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 CCDC102AQ96A19 550 aa12.34□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 USP17L12C9JPN9 530 aa12.33□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 USP17L21D6R901 530 aa12.33□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CCP110O43303 1012 aa12.33□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 EIF3JO75822 258 aaKnown RBP12.33□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 XBP1P17861 261 aa12.33□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 MAPKAPK5Q8IW41 473 aa12.33□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 PDLIM2Q96JY6 352 aa12.33□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 PLIN2Q99541 437 aa12.33□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 GOLGB1Q14789 3259 aaKnown RBP12.33□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 DIXDC1Q155Q3 683 aa12.33□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 DOK7Q18PE1 504 aa12.33□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 IFIT1BQ5T764 474 aaKnown RBP12.33□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CTCFLQ8NI51 663 aaPredicted RBP12.33□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 PARP10Q53GL7 1025 aa12.33□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ZNF165P49910 485 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 MNAT1P51948 309 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ANO6Q4KMQ2 910 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 TTC6Q86TZ1 520 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 SSBP05455 408 aaKnown RBP eCLIP12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 RFX5P48382 616 aaPredicted RBP12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 SF3B2Q13435 895 aaKnown RBP12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 SNW1Q13573 536 aaKnown RBP12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 RTN1Q16799 776 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 TTC31Q49AM3 519 aaPredicted RBP12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 LCORLQ8N3X6 602 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 FAM200AQ8TCP9 573 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ISCA1Q9BUE6 129 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 TMEM51Q9NW97 253 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 SKILP12757 684 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 TCP10Q12799 353 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ELF2Q15723 593 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ZMYM1Q5SVZ6 1142 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 STOX1Q6ZVD7 989 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 GIMAP7Q8NHV1 300 aa12.32□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CDKL5O76039 1030 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 TPM1P09493 284 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 SCNN1DP51172 638 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ST5P78524 1137 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 DRC1Q96MC2 740 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 AK9Q5TCS8 1911 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 NEMFO60524 1076 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 NLRP5P59047 1200 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 AXDND1Q5T1B0 1012 aaPredicted RBP12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CATIPQ7Z7H3 387 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CRACR2BQ8N4Y2 399 aaPredicted RBP12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 STAMQ92783 540 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CDCA7Q9BWT1 371 aaPredicted RBP12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ZHX3Q9H4I2 956 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 BRMS1Q9HCU9 246 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 REREQ9P2R6 1566 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 SFPQP23246 707 aaKnown RBP eCLIP12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 AFMP43652 599 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ARHGAP29Q52LW3 1261 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 RBM26Q5T8P6 1007 aaKnown RBP12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 IFNL3Q8IZI9 196 aa12.31□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 PEAK1Q9H792 1746 aa12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 LDHBP07195 334 aaKnown RBP12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 IBSPP21815 317 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms