RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 PRR20DP86480 221 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 PRR20BP86481 221 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 PRR20AP86496 221 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 PTPN11Q06124 597 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-212ENST00000493341 NEUROD1Q13562 356 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.41□□□□□ -1.38
VPS13A-212ENST00000493341 IFFO2Q5TF58 517 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 TTC6Q86TZ1 520 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 FERMT3Q86UX7 667 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 FAM178BQ8IXR5 827 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 JDP2Q8WYK2 163 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 EHMT1Q9H9B1 1298 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 SLC52A1Q9NWF4 448 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 ZMYM5Q9UJ78 669 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 FAN1Q9Y2M0 1017 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 A0A1W2PQH9 124 aa6.4□□□□□ -1.38
VPS13A-212ENST00000493341 SMNDC1O75940 238 aaKnown RBP eCLIP6.4□□□□□ -1.38
VPS13A-212ENST00000493341 B3GALT4O96024 378 aa6.4□□□□□ -1.38
VPS13A-212ENST00000493341 ARNTP27540 789 aa6.4□□□□□ -1.38
VPS13A-212ENST00000493341 GPLD1P80108 840 aa6.4□□□□□ -1.38
VPS13A-212ENST00000493341 RPL6Q02878 288 aaKnown RBP6.4□□□□□ -1.38
VPS13A-212ENST00000493341 ZNF423Q2M1K9 1284 aa6.4□□□□□ -1.38
VPS13A-212ENST00000493341 DALRD3Q5D0E6 543 aaKnown RBP6.4□□□□□ -1.38
VPS13A-212ENST00000493341 MPRIPQ6WCQ1 1025 aa6.4□□□□□ -1.38
VPS13A-212ENST00000493341 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.4□□□□□ -1.38
VPS13A-212ENST00000493341 DHX37Q8IY37 1157 aaKnown RBP6.4□□□□□ -1.38
VPS13A-212ENST00000493341 GAL3ST3Q96A11 431 aa6.4□□□□□ -1.38
VPS13A-212ENST00000493341 POLR3KQ9Y2Y1 108 aaPredicted RBP6.4□□□□□ -1.38
VPS13A-212ENST00000493341 UBAP2LQ14157 1087 aaKnown RBP6.4□□□□□ -1.39
VPS13A-212ENST00000493341 MAP1SQ66K74 1059 aaPredicted RBP6.4□□□□□ -1.39
VPS13A-212ENST00000493341 ST13P5Q8NFI4 369 aaPredicted RBP6.4□□□□□ -1.39
VPS13A-212ENST00000493341 MAN1A2O60476 641 aa6.39□□□□□ -1.39
VPS13A-212ENST00000493341 EVA1CP58658 441 aa6.39□□□□□ -1.39
VPS13A-212ENST00000493341 ODR4Q5SWX8 454 aa6.39□□□□□ -1.39
VPS13A-212ENST00000493341 MRM1Q6IN84 353 aaKnown RBP6.39□□□□□ -1.39
VPS13A-212ENST00000493341 FMNL3Q8IVF7 1028 aa6.39□□□□□ -1.39
VPS13A-212ENST00000493341 MICALL1Q8N3F8 863 aa6.39□□□□□ -1.39
VPS13A-212ENST00000493341 JMYQ8N9B5 988 aa6.39□□□□□ -1.39
VPS13A-212ENST00000493341 PRPF38AQ8NAV1 312 aaKnown RBP6.39□□□□□ -1.39
VPS13A-212ENST00000493341 EMILIN2Q9BXX0 1053 aa6.39□□□□□ -1.39
VPS13A-212ENST00000493341 PLA2G2EQ9NZK7 142 aa6.39□□□□□ -1.39
VPS13A-212ENST00000493341 H7C1W4 665 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 GUCY2CP25092 1073 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 EEPD1Q7L9B9 569 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 TRIM46Q7Z4K8 759 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 VN1R5Q7Z5H4 357 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 C19orf47Q8N9M1 422 aaKnown RBP6.38□□□□□ -1.39
VPS13A-212ENST00000493341 CEP89Q96ST8 783 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 IER2Q9BTL4 223 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 HOMER2Q9NSB8 354 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 ATE1O95260 518 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 VIL1P09327 827 aaKnown RBP6.38□□□□□ -1.39
VPS13A-212ENST00000493341 DBN1Q16643 649 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 ADAMTSL4Q6UY14 1074 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 JAMLQ86YT9 394 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 SYNPOQ8N3V7 929 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 ZSCAN1Q8NBB4 408 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 PSMD1Q99460 953 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 TM9SF2Q99805 663 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 UBE2OQ9C0C9 1292 aaKnown RBP6.38□□□□□ -1.39
VPS13A-212ENST00000493341 LACRTQ9GZZ8 138 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 PRR12Q9ULL5 1215 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 PLAAQ9Y263 795 aa6.38□□□□□ -1.39
VPS13A-212ENST00000493341 A0A0G2JS52 829 aa6.37□□□□□ -1.39
VPS13A-212ENST00000493341 MAP4K4O95819 1239 aaPredicted RBP6.37□□□□□ -1.39
VPS13A-212ENST00000493341 CDK8P49336 464 aa6.37□□□□□ -1.39
VPS13A-212ENST00000493341 LRRFIP1Q32MZ4 808 aaKnown RBP6.37□□□□□ -1.39
VPS13A-212ENST00000493341 ZSWIM2Q8NEG5 633 aa6.37□□□□□ -1.39
VPS13A-212ENST00000493341 ZC3H12CQ9C0D7 883 aaKnown RBP6.37□□□□□ -1.39
VPS13A-212ENST00000493341 TYW1Q9NV66 732 aaKnown RBP6.37□□□□□ -1.39
VPS13A-212ENST00000493341 NDFIP2Q9NV92 336 aa6.37□□□□□ -1.39
VPS13A-212ENST00000493341 DNAJB12Q9NXW2 375 aaKnown RBP6.37□□□□□ -1.39
VPS13A-212ENST00000493341 FAM86C2PA6NEL3 165 aa6.37□□□□□ -1.39
VPS13A-212ENST00000493341 FAM177BA6PVY3 158 aa6.37□□□□□ -1.39
VPS13A-212ENST00000493341 CPB1P15086 417 aa6.37□□□□□ -1.39
VPS13A-212ENST00000493341 ZNF252P-AS1Q0IIN9 211 aa6.37□□□□□ -1.39
VPS13A-212ENST00000493341 PCSK7Q16549 785 aa6.37□□□□□ -1.39
VPS13A-212ENST00000493341 VHLLQ6RSH7 139 aa6.37□□□□□ -1.39
VPS13A-212ENST00000493341 FAM35AQ86V20 835 aa6.37□□□□□ -1.39
VPS13A-212ENST00000493341 ATP8A1Q9Y2Q0 1164 aa6.37□□□□□ -1.39
VPS13A-212ENST00000493341 HTR3BO95264 441 aa6.36□□□□□ -1.39
VPS13A-212ENST00000493341 FAM153BP0C7A2 387 aa6.36□□□□□ -1.39
VPS13A-212ENST00000493341 MYCLP1P12525 358 aaPredicted RBP6.36□□□□□ -1.39
VPS13A-212ENST00000493341 PTPRAP18433 802 aa6.36□□□□□ -1.39
VPS13A-212ENST00000493341 PTSQ03393 145 aa6.36□□□□□ -1.39
VPS13A-212ENST00000493341 ZYXQ15942 572 aaKnown RBP6.36□□□□□ -1.39
VPS13A-212ENST00000493341 KRT26Q7Z3Y9 468 aa6.36□□□□□ -1.39
VPS13A-212ENST00000493341 DDX54Q8TDD1 881 aaKnown RBP6.36□□□□□ -1.39
VPS13A-212ENST00000493341 ACSBG1Q96GR2 724 aa6.36□□□□□ -1.39
VPS13A-212ENST00000493341 GABBR1Q9UBS5 961 aa6.36□□□□□ -1.39
VPS13A-212ENST00000493341 PCDHB10Q9UN67 800 aa6.36□□□□□ -1.39
VPS13A-212ENST00000493341 PCDHA4Q9UN74 947 aa6.36□□□□□ -1.39
VPS13A-212ENST00000493341 SOX13Q9UN79 622 aa6.36□□□□□ -1.39
VPS13A-212ENST00000493341 FAM187AA6NFU0 413 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 IRS4O14654 1257 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-212ENST00000493341 PEX14O75381 377 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 ESRRAP11474 423 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-212ENST00000493341 CDKN1CP49918 316 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-212ENST00000493341 IKBKEQ14164 716 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 CT47A1Q5JQC4 288 aaPredicted RBP6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 176.2 ms