RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 RCOR1Q9UKL0 485 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 CFAP45Q9UL16 551 aa12.61□□□□□ -0.39
USP4-214ENST00000491791 MYH15Q9Y2K3 1946 aa12.6□□□□□ -0.39
USP4-214ENST00000491791 GSG1L2A8MUP6 293 aa12.6□□□□□ -0.39
USP4-214ENST00000491791 FDPSP14324 419 aaKnown RBP12.6□□□□□ -0.39
USP4-214ENST00000491791 BCAMP50895 628 aa12.6□□□□□ -0.39
USP4-214ENST00000491791 GIMAP6Q6P9H5 292 aa12.6□□□□□ -0.39
USP4-214ENST00000491791 RBM43Q6ZSC3 357 aaKnown RBP12.6□□□□□ -0.39
USP4-214ENST00000491791 C3orf67Q6ZVT6 689 aa12.6□□□□□ -0.39
USP4-214ENST00000491791 IFNL3Q8IZI9 196 aa12.6□□□□□ -0.39
USP4-214ENST00000491791 LEO1Q8WVC0 666 aaPredicted RBP12.6□□□□□ -0.39
USP4-214ENST00000491791 ANP32BQ92688 251 aaKnown RBP12.6□□□□□ -0.39
USP4-214ENST00000491791 AIDAQ96BJ3 306 aa12.6□□□□□ -0.39
USP4-214ENST00000491791 NLRP3Q96P20 1036 aa12.6□□□□□ -0.39
USP4-214ENST00000491791 LRRC2Q9BYS8 371 aa12.6□□□□□ -0.39
USP4-214ENST00000491791 DENND2AQ9ULE3 1009 aa12.6□□□□□ -0.39
USP4-214ENST00000491791 ANGEL1Q9UNK9 670 aaKnown RBP12.6□□□□□ -0.39
USP4-214ENST00000491791 C4AP0C0L4 1744 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 H3BQV1 296 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 SH2B2O14492 632 aaPredicted RBP12.59□□□□□ -0.39
USP4-214ENST00000491791 FIBPO43427 364 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 ZPR1O75312 459 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 TM4SF1P30408 202 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 RFC4P35249 363 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 NT5C2P49902 561 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 RPS8P62241 208 aaKnown RBP12.59□□□□□ -0.39
USP4-214ENST00000491791 IFFO2Q5TF58 517 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 TBC1D10CQ8IV04 446 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 MAGEB6Q8N7X4 407 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 IGDCC4Q8TDY8 1250 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 FAM84BQ96KN1 310 aaPredicted RBP12.59□□□□□ -0.39
USP4-214ENST00000491791 NACAP1Q9BZK3 213 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 EPB41L4AQ9HCS5 686 aaPredicted RBP12.59□□□□□ -0.39
USP4-214ENST00000491791 BCS1LQ9Y276 419 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 CACNA1SQ13698 1873 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 IRS2Q9Y4H2 1338 aa12.59□□□□□ -0.39
USP4-214ENST00000491791 MBD4O95243 580 aa12.58□□□□□ -0.4
USP4-214ENST00000491791 FGRP09769 529 aa12.58□□□□□ -0.4
USP4-214ENST00000491791 PCP11498 1178 aaKnown RBP12.58□□□□□ -0.4
USP4-214ENST00000491791 HAND2P61296 217 aa12.58□□□□□ -0.4
USP4-214ENST00000491791 C15orf52Q6ZUT6 534 aaKnown RBP12.58□□□□□ -0.4
USP4-214ENST00000491791 STAG1Q8WVM7 1258 aa12.58□□□□□ -0.4
USP4-214ENST00000491791 ARHGEF1Q92888 912 aaKnown RBP12.58□□□□□ -0.4
USP4-214ENST00000491791 KRT23Q9C075 422 aa12.58□□□□□ -0.4
USP4-214ENST00000491791 KIAA1551Q9HCM1 1747 aa12.58□□□□□ -0.4
USP4-214ENST00000491791 DDX19AQ9NUU7 478 aaKnown RBP12.58□□□□□ -0.4
USP4-214ENST00000491791 PARP3Q9Y6F1 533 aa12.58□□□□□ -0.4
USP4-214ENST00000491791 KLF18A0A0U1RQI7 1052 aa12.57□□□□□ -0.4
USP4-214ENST00000491791 FAM177BA6PVY3 158 aa12.57□□□□□ -0.4
USP4-214ENST00000491791 CAVIN4Q5BKX8 364 aa12.57□□□□□ -0.4
USP4-214ENST00000491791 AKNAD1Q5T1N1 836 aa12.57□□□□□ -0.4
USP4-214ENST00000491791 TMTC2Q8N394 836 aa12.57□□□□□ -0.4
USP4-214ENST00000491791 FBXO18Q8NFZ0 1043 aa12.57□□□□□ -0.4
USP4-214ENST00000491791 SPATA32Q96LK8 384 aa12.57□□□□□ -0.4
USP4-214ENST00000491791 ZNF396Q96N95 335 aaPredicted RBP12.57□□□□□ -0.4
USP4-214ENST00000491791 RIOK1Q9BRS2 568 aaKnown RBP12.57□□□□□ -0.4
USP4-214ENST00000491791 BRIP1Q9BX63 1249 aa12.57□□□□□ -0.4
USP4-214ENST00000491791 RNF41Q9H4P4 317 aaPredicted RBP12.57□□□□□ -0.4
USP4-214ENST00000491791 COL1A1P02452 1464 aaPredicted RBP12.57□□□□□ -0.4
USP4-214ENST00000491791 STK36Q9NRP7 1315 aa12.57□□□□□ -0.4
USP4-214ENST00000491791 SNAP23O00161 211 aa12.56□□□□□ -0.4
USP4-214ENST00000491791 CDKL5O76039 1030 aa12.56□□□□□ -0.4
USP4-214ENST00000491791 PPP2R5BQ15173 497 aa12.56□□□□□ -0.4
USP4-214ENST00000491791 FOXD4L6Q3SYB3 417 aaPredicted RBP12.56□□□□□ -0.4
USP4-214ENST00000491791 FOXD4L3Q6VB84 417 aaPredicted RBP12.56□□□□□ -0.4
USP4-214ENST00000491791 ARHGAP27Q6ZUM4 889 aa12.56□□□□□ -0.4
USP4-214ENST00000491791 CYB5R4Q7L1T6 521 aa12.56□□□□□ -0.4
USP4-214ENST00000491791 BRAPQ7Z569 592 aa12.56□□□□□ -0.4
USP4-214ENST00000491791 FERMT3Q86UX7 667 aa12.56□□□□□ -0.4
USP4-214ENST00000491791 NBPF5PQ86XG9 351 aaPredicted RBP12.56□□□□□ -0.4
USP4-214ENST00000491791 CELF1Q92879 486 aaKnown RBP12.56□□□□□ -0.4
USP4-214ENST00000491791 NAPBQ9H115 298 aa12.56□□□□□ -0.4
USP4-214ENST00000491791 MAST2Q6P0Q8 1798 aa12.56□□□□□ -0.4
USP4-214ENST00000491791 C10orf71Q711Q0 1435 aa12.55□□□□□ -0.4
USP4-214ENST00000491791 APPP05067 770 aa12.55□□□□□ -0.4
USP4-214ENST00000491791 GYS1P13807 737 aa12.55□□□□□ -0.4
USP4-214ENST00000491791 GTF2E1P29083 439 aaPredicted RBP12.55□□□□□ -0.4
USP4-214ENST00000491791 CCT2P78371 535 aaKnown RBP12.55□□□□□ -0.4
USP4-214ENST00000491791 NTRK3Q16288 839 aa12.55□□□□□ -0.4
USP4-214ENST00000491791 APOA5Q6Q788 366 aa12.55□□□□□ -0.4
USP4-214ENST00000491791 CHST3Q7LGC8 479 aa12.55□□□□□ -0.4
USP4-214ENST00000491791 LCORLQ8N3X6 602 aa12.55□□□□□ -0.4
USP4-214ENST00000491791 DDX11Q96FC9 970 aa12.55□□□□□ -0.4
USP4-214ENST00000491791 PGBD1Q96JS3 809 aa12.55□□□□□ -0.4
USP4-214ENST00000491791 ARMT1Q9H993 441 aa12.55□□□□□ -0.4
USP4-214ENST00000491791 LY9Q9HBG7 655 aa12.55□□□□□ -0.4
USP4-214ENST00000491791 NCOA5Q9HCD5 579 aaKnown RBP12.55□□□□□ -0.4
USP4-214ENST00000491791 GPHNQ9NQX3 736 aaPredicted RBP12.55□□□□□ -0.4
USP4-214ENST00000491791 RTEL1Q9NZ71 1219 aa12.55□□□□□ -0.4
USP4-214ENST00000491791 LRP2BPQ9P2M1 347 aa12.55□□□□□ -0.4
USP4-214ENST00000491791 SRP68Q9UHB9 627 aaKnown RBP12.55□□□□□ -0.4
USP4-214ENST00000491791 DUOX1Q9NRD9 1551 aa12.55□□□□□ -0.4
USP4-214ENST00000491791 GOLGA8BA8MQT2 603 aa12.54□□□□□ -0.4
USP4-214ENST00000491791 KIF3CO14782 793 aa12.54□□□□□ -0.4
USP4-214ENST00000491791 CAVIN2O95810 425 aa12.54□□□□□ -0.4
USP4-214ENST00000491791 CYP7A1P22680 504 aa12.54□□□□□ -0.4
USP4-214ENST00000491791 CLCN1P35523 988 aa12.54□□□□□ -0.4
USP4-214ENST00000491791 APLP1P51693 650 aa12.54□□□□□ -0.4
USP4-214ENST00000491791 FAM173BQ6P4H8 233 aa12.54□□□□□ -0.4
USP4-214ENST00000491791 CPLX2Q6PUV4 134 aaKnown RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms