RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 KIAA0319Q5VV43 1072 aa8.88□□□□□ -0.99
SCN1A-206ENST00000491429 ITPKAP23677 461 aa8.87□□□□□ -0.99
SCN1A-206ENST00000491429 DDX54Q8TDD1 881 aaKnown RBP8.87□□□□□ -0.99
SCN1A-206ENST00000491429 EHD4Q9H223 541 aa8.87□□□□□ -0.99
SCN1A-206ENST00000491429 CDK5R2Q13319 367 aa8.86□□□□□ -0.99
SCN1A-206ENST00000491429 ZNF648Q5T619 568 aaPredicted RBP8.86□□□□□ -0.99
SCN1A-206ENST00000491429 CCDC82Q8N4S0 544 aa8.86□□□□□ -0.99
SCN1A-206ENST00000491429 WDR89Q96FK6 387 aaPredicted RBP8.86□□□□□ -0.99
SCN1A-206ENST00000491429 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.86□□□□□ -0.99
SCN1A-206ENST00000491429 CARMIL2Q6F5E8 1435 aa8.86□□□□□ -0.99
SCN1A-206ENST00000491429 TMPRSS2O15393 492 aa8.85□□□□□ -0.99
SCN1A-206ENST00000491429 LIG1P18858 919 aa8.85□□□□□ -0.99
SCN1A-206ENST00000491429 ORC1Q13415 861 aa8.85□□□□□ -0.99
SCN1A-206ENST00000491429 STK11IPQ8N1F8 1099 aa8.85□□□□□ -0.99
SCN1A-206ENST00000491429 PLD6Q8N2A8 252 aaKnown RBP8.85□□□□□ -0.99
SCN1A-206ENST00000491429 FAM181AQ8N9Y4 354 aa8.85□□□□□ -0.99
SCN1A-206ENST00000491429 NPHS2Q9NP85 383 aa8.85□□□□□ -0.99
SCN1A-206ENST00000491429 U3KQE9 123 aa8.85□□□□□ -0.99
SCN1A-206ENST00000491429 FAM87AP0C7U9 286 aa8.84□□□□□ -0.99
SCN1A-206ENST00000491429 ZC3H12CQ9C0D7 883 aaKnown RBP8.84□□□□□ -0.99
SCN1A-206ENST00000491429 CCDC86Q9H6F5 360 aaKnown RBP8.84□□□□□ -0.99
SCN1A-206ENST00000491429 PPP1R15AO75807 674 aaPredicted RBP8.83□□□□□ -1
SCN1A-206ENST00000491429 AP3B2Q13367 1082 aa8.83□□□□□ -1
SCN1A-206ENST00000491429 ECM1Q16610 540 aa8.83□□□□□ -1
SCN1A-206ENST00000491429 CYP27C1Q4G0S4 372 aa8.83□□□□□ -1
SCN1A-206ENST00000491429 ABCB6Q9NP58 842 aa8.83□□□□□ -1
SCN1A-206ENST00000491429 CRIM1Q9NZV1 1036 aa8.83□□□□□ -1
SCN1A-206ENST00000491429 BRPF3Q9ULD4 1205 aa8.83□□□□□ -1
SCN1A-206ENST00000491429 SYNGAP1Q96PV0 1343 aa8.82□□□□□ -1
SCN1A-206ENST00000491429 ICMTO60725 284 aa8.82□□□□□ -1
SCN1A-206ENST00000491429 CD8BP10966 210 aa8.82□□□□□ -1
SCN1A-206ENST00000491429 CD96P40200 585 aa8.82□□□□□ -1
SCN1A-206ENST00000491429 ZNF157P51786 506 aaPredicted RBP8.82□□□□□ -1
SCN1A-206ENST00000491429 H3BRB1 525 aa8.81□□□□□ -1
SCN1A-206ENST00000491429 BIN1O00499 593 aa8.81□□□□□ -1
SCN1A-206ENST00000491429 ZNF862O60290 1169 aa8.81□□□□□ -1
SCN1A-206ENST00000491429 FAAP100Q0VG06 881 aa8.81□□□□□ -1
SCN1A-206ENST00000491429 ZNF124Q15973 351 aa8.81□□□□□ -1
SCN1A-206ENST00000491429 NETO1Q8TDF5 533 aa8.81□□□□□ -1
SCN1A-206ENST00000491429 MISP3Q96FF7 219 aa8.81□□□□□ -1
SCN1A-206ENST00000491429 FANCD2OSQ96PS1 177 aa8.81□□□□□ -1
SCN1A-206ENST00000491429 TUT1Q9H6E5 874 aaKnown RBP8.81□□□□□ -1
SCN1A-206ENST00000491429 PIDD1Q9HB75 910 aa8.81□□□□□ -1
SCN1A-206ENST00000491429 ADAMTS6Q9UKP5 1117 aa8.81□□□□□ -1
SCN1A-206ENST00000491429 CPNE3O75131 537 aaKnown RBP8.8□□□□□ -1
SCN1A-206ENST00000491429 FUT4P22083 530 aa8.8□□□□□ -1
SCN1A-206ENST00000491429 PTPN12Q05209 780 aaKnown RBP8.8□□□□□ -1
SCN1A-206ENST00000491429 RC3H2Q9HBD1 1191 aaKnown RBP8.8□□□□□ -1
SCN1A-206ENST00000491429 MBNL3Q9NUK0 354 aaKnown RBP8.8□□□□□ -1
SCN1A-206ENST00000491429 EGFL7Q9UHF1 273 aa8.8□□□□□ -1
SCN1A-206ENST00000491429 LEFTY1O75610 366 aa8.79□□□□□ -1
SCN1A-206ENST00000491429 NEFLP07196 543 aa8.79□□□□□ -1
SCN1A-206ENST00000491429 RNASE1P07998 156 aaKnown RBP8.79□□□□□ -1
SCN1A-206ENST00000491429 SERPINB4P48594 390 aa8.79□□□□□ -1
SCN1A-206ENST00000491429 ID3Q02535 119 aa8.79□□□□□ -1
SCN1A-206ENST00000491429 GLIS3Q8NEA6 775 aa8.79□□□□□ -1
SCN1A-206ENST00000491429 ATXN3LQ9H3M9 355 aa8.79□□□□□ -1
SCN1A-206ENST00000491429 DISC1Q9NRI5 854 aa8.79□□□□□ -1
SCN1A-206ENST00000491429 ARHGAP4P98171 946 aa8.78□□□□□ -1
SCN1A-206ENST00000491429 PRPF40BQ6NWY9 871 aaKnown RBP8.78□□□□□ -1
SCN1A-206ENST00000491429 ATG4DQ86TL0 474 aaPredicted RBP8.78□□□□□ -1
SCN1A-206ENST00000491429 GLYCTKQ8IVS8 523 aa8.78□□□□□ -1
SCN1A-206ENST00000491429 SMYD4Q8IYR2 804 aaPredicted RBP8.78□□□□□ -1
SCN1A-206ENST00000491429 CCDC74AQ96AQ1 378 aa8.78□□□□□ -1
SCN1A-206ENST00000491429 FAM129BQ96TA1 746 aa8.78□□□□□ -1
SCN1A-206ENST00000491429 PCDHGC5Q9Y5F6 944 aa8.78□□□□□ -1
SCN1A-206ENST00000491429 TMEM238LA0A1B0GVL6 79 aa8.77□□□□□ -1.01
SCN1A-206ENST00000491429 TTLL4Q14679 1199 aa8.77□□□□□ -1.01
SCN1A-206ENST00000491429 KIF4BQ2VIQ3 1234 aa8.77□□□□□ -1.01
SCN1A-206ENST00000491429 RPS26P11Q5JNZ5 115 aaPredicted RBP8.77□□□□□ -1.01
SCN1A-206ENST00000491429 LCE4AQ5TA78 99 aa8.77□□□□□ -1.01
SCN1A-206ENST00000491429 FAM168AQ92567 244 aa8.77□□□□□ -1.01
SCN1A-206ENST00000491429 NDUFB5O43674 189 aa8.76□□□□□ -1.01
SCN1A-206ENST00000491429 GADD45BO75293 160 aaPredicted RBP8.76□□□□□ -1.01
SCN1A-206ENST00000491429 SLFN14P0C7P3 912 aa8.76□□□□□ -1.01
SCN1A-206ENST00000491429 HCLS1P14317 486 aaPredicted RBP8.76□□□□□ -1.01
SCN1A-206ENST00000491429 PRKCQQ04759 706 aa8.76□□□□□ -1.01
SCN1A-206ENST00000491429 LRRN4CLQ8ND94 238 aa8.76□□□□□ -1.01
SCN1A-206ENST00000491429 KRTAP4-9Q9BYQ8 210 aa8.76□□□□□ -1.01
SCN1A-206ENST00000491429 VAV3Q9UKW4 847 aa8.76□□□□□ -1.01
SCN1A-206ENST00000491429 EIF1AYO14602 144 aaKnown RBP8.75□□□□□ -1.01
SCN1A-206ENST00000491429 RNGTTO60942 597 aaKnown RBP8.75□□□□□ -1.01
SCN1A-206ENST00000491429 GSTP1P09211 210 aaKnown RBP8.75□□□□□ -1.01
SCN1A-206ENST00000491429 PI4K2BQ8TCG2 481 aa8.75□□□□□ -1.01
SCN1A-206ENST00000491429 C1orf115Q9H7X2 142 aa8.75□□□□□ -1.01
SCN1A-206ENST00000491429 GPR182O15218 404 aa8.74□□□□□ -1.01
SCN1A-206ENST00000491429 OXCT1P55809 520 aa8.74□□□□□ -1.01
SCN1A-206ENST00000491429 PDE3BQ13370 1112 aa8.74□□□□□ -1.01
SCN1A-206ENST00000491429 GRM2Q14416 872 aa8.74□□□□□ -1.01
SCN1A-206ENST00000491429 IFI16Q16666 785 aaKnown RBP8.74□□□□□ -1.01
SCN1A-206ENST00000491429 DUSP23Q9BVJ7 150 aa8.74□□□□□ -1.01
SCN1A-206ENST00000491429 PLAGL2Q9UPG8 496 aa8.74□□□□□ -1.01
SCN1A-206ENST00000491429 FARP2O94887 1054 aaPredicted RBP8.73□□□□□ -1.01
SCN1A-206ENST00000491429 IGHA2P01877 340 aa8.73□□□□□ -1.01
SCN1A-206ENST00000491429 NEFMP07197 916 aa8.73□□□□□ -1.01
SCN1A-206ENST00000491429 AOC3Q16853 763 aa8.73□□□□□ -1.01
SCN1A-206ENST00000491429 EPS8L3Q8TE67 593 aaKnown RBP8.73□□□□□ -1.01
SCN1A-206ENST00000491429 NIF3L1Q9GZT8 377 aa8.73□□□□□ -1.01
SCN1A-206ENST00000491429 KRT82Q9NSB4 513 aa8.73□□□□□ -1.01
SCN1A-206ENST00000491429 DBX1A6NMT0 343 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms