RNA–Protein interactions for RNA: ENST00000491142.1

HPS4-215, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 486 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-215ENST00000491142 DDX19BQ9UMR2 479 aa10.72□□□□□ -0.69
HPS4-215ENST00000491142 TRPC6Q9Y210 931 aa10.72□□□□□ -0.69
HPS4-215ENST00000491142 MYH3P11055 1940 aa10.72□□□□□ -0.69
HPS4-215ENST00000491142 A0A0C4DFX4 3053 aa10.71□□□□□ -0.69
HPS4-215ENST00000491142 CCL15-CCL14A0A0B4J2E2 113 aa10.71□□□□□ -0.69
HPS4-215ENST00000491142 VAMP4O75379 141 aa10.71□□□□□ -0.69
HPS4-215ENST00000491142 GCKRQ14397 625 aa10.71□□□□□ -0.69
HPS4-215ENST00000491142 TAF1CQ15572 869 aaPredicted RBP10.71□□□□□ -0.69
HPS4-215ENST00000491142 CCL15Q16663 113 aa10.71□□□□□ -0.69
HPS4-215ENST00000491142 C15orf52Q6ZUT6 534 aaKnown RBP10.71□□□□□ -0.69
HPS4-215ENST00000491142 ARHGAP39Q9C0H5 1083 aa10.71□□□□□ -0.69
HPS4-215ENST00000491142 ZFYVE28Q9HCC9 887 aa10.71□□□□□ -0.69
HPS4-215ENST00000491142 COL6A3P12111 3177 aa10.71□□□□□ -0.7
HPS4-215ENST00000491142 ANKRD18BA2A2Z9 1011 aa10.7□□□□□ -0.7
HPS4-215ENST00000491142 FKBP1AP62942 108 aaKnown RBP10.7□□□□□ -0.7
HPS4-215ENST00000491142 VGLL4Q14135 290 aa10.7□□□□□ -0.7
HPS4-215ENST00000491142 ARHGEF6Q15052 776 aa10.7□□□□□ -0.7
HPS4-215ENST00000491142 ZNF804AQ7Z570 1209 aa10.7□□□□□ -0.7
HPS4-215ENST00000491142 MRPL50Q8N5N7 158 aaKnown RBP10.7□□□□□ -0.7
HPS4-215ENST00000491142 TEPSINQ96N21 525 aa10.7□□□□□ -0.7
HPS4-215ENST00000491142 IPO9Q96P70 1041 aaKnown RBP10.7□□□□□ -0.7
HPS4-215ENST00000491142 CHMP4AQ9BY43 222 aa10.7□□□□□ -0.7
HPS4-215ENST00000491142 RWDD1Q9H446 243 aaPredicted RBP10.7□□□□□ -0.7
HPS4-215ENST00000491142 TDRD3Q9H7E2 651 aaKnown RBP10.7□□□□□ -0.7
HPS4-215ENST00000491142 ZNF70Q9UC06 446 aaPredicted RBP10.7□□□□□ -0.7
HPS4-215ENST00000491142 NOB1Q9ULX3 412 aaKnown RBP10.7□□□□□ -0.7
HPS4-215ENST00000491142 PCDHB15Q9Y5E8 787 aa10.7□□□□□ -0.7
HPS4-215ENST00000491142 TRIOBPQ9H2D6 2365 aa10.69□□□□□ -0.7
HPS4-215ENST00000491142 TCP10L2B9ZVM9 353 aa10.69□□□□□ -0.7
HPS4-215ENST00000491142 ECM2O94769 699 aaPredicted RBP10.69□□□□□ -0.7
HPS4-215ENST00000491142 GTF2A2P52657 109 aa10.69□□□□□ -0.7
HPS4-215ENST00000491142 MAP3K9P80192 1104 aa10.69□□□□□ -0.7
HPS4-215ENST00000491142 STK31Q9BXU1 1019 aa10.69□□□□□ -0.7
HPS4-215ENST00000491142 TMEM39BQ9GZU3 492 aa10.69□□□□□ -0.7
HPS4-215ENST00000491142 RBM27Q9P2N5 1060 aaKnown RBP10.69□□□□□ -0.7
HPS4-215ENST00000491142 ECM29Q5VYK3 1845 aa10.69□□□□□ -0.7
HPS4-215ENST00000491142 CEP290O15078 2479 aa10.68□□□□□ -0.7
HPS4-215ENST00000491142 OTOFQ9HC10 1997 aa10.68□□□□□ -0.7
HPS4-215ENST00000491142 FOXO4P98177 505 aa10.68□□□□□ -0.7
HPS4-215ENST00000491142 IFIT5Q13325 482 aaKnown RBP10.68□□□□□ -0.7
HPS4-215ENST00000491142 HDAC1Q13547 482 aaPredicted RBP10.68□□□□□ -0.7
HPS4-215ENST00000491142 TNFAIP1Q13829 316 aa10.68□□□□□ -0.7
HPS4-215ENST00000491142 MTFR1Q15390 333 aa10.68□□□□□ -0.7
HPS4-215ENST00000491142 C8orf34Q49A92 452 aa10.68□□□□□ -0.7
HPS4-215ENST00000491142 SKAP1Q86WV1 359 aa10.68□□□□□ -0.7
HPS4-215ENST00000491142 IFNLR1Q8IU57 520 aaPredicted RBP10.68□□□□□ -0.7
HPS4-215ENST00000491142 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.68□□□□□ -0.7
HPS4-215ENST00000491142 DPF3Q92784 378 aa10.68□□□□□ -0.7
HPS4-215ENST00000491142 SHISA4Q96DD7 197 aa10.68□□□□□ -0.7
HPS4-215ENST00000491142 CHMP4BQ9H444 224 aaKnown RBP10.68□□□□□ -0.7
HPS4-215ENST00000491142 TTF2Q9UNY4 1162 aaKnown RBP10.68□□□□□ -0.7
HPS4-215ENST00000491142 PCDHB13Q9Y5F0 798 aa10.68□□□□□ -0.7
HPS4-215ENST00000491142 ZSWIM8A7E2V4 1837 aa10.68□□□□□ -0.7
HPS4-215ENST00000491142 TLR2O60603 784 aa10.67□□□□□ -0.7
HPS4-215ENST00000491142 LACTBP83111 547 aaPredicted RBP10.67□□□□□ -0.7
HPS4-215ENST00000491142 TWISTNBQ3B726 338 aaPredicted RBP10.67□□□□□ -0.7
HPS4-215ENST00000491142 MFSD14BQ5SR56 506 aa10.67□□□□□ -0.7
HPS4-215ENST00000491142 TMEM57Q8N5G2 664 aa10.67□□□□□ -0.7
HPS4-215ENST00000491142 ZNF594Q96JF6 807 aaPredicted RBP10.67□□□□□ -0.7
HPS4-215ENST00000491142 ZBTB40Q9NUA8 1239 aa10.67□□□□□ -0.7
HPS4-215ENST00000491142 SERPINA10Q9UK55 444 aa10.67□□□□□ -0.7
HPS4-215ENST00000491142 NOP58Q9Y2X3 529 aaKnown RBP10.67□□□□□ -0.7
HPS4-215ENST00000491142 CHMP3Q9Y3E7 222 aa10.67□□□□□ -0.7
HPS4-215ENST00000491142 CSADQ9Y600 493 aa10.67□□□□□ -0.7
HPS4-215ENST00000491142 LAMA3Q16787 3333 aa10.66□□□□□ -0.7
HPS4-215ENST00000491142 FAM205AQ6ZU69 1335 aa10.66□□□□□ -0.7
HPS4-215ENST00000491142 SPDYE5A6NIY4 337 aa10.66□□□□□ -0.7
HPS4-215ENST00000491142 BTBD19C9JJ37 291 aa10.66□□□□□ -0.7
HPS4-215ENST00000491142 CTGFP29279 349 aa10.66□□□□□ -0.7
HPS4-215ENST00000491142 ATN1P54259 1190 aaPredicted RBP10.66□□□□□ -0.7
HPS4-215ENST00000491142 FLIIQ13045 1269 aa10.66□□□□□ -0.7
HPS4-215ENST00000491142 KIF22Q14807 665 aa10.66□□□□□ -0.7
HPS4-215ENST00000491142 GRIK5Q16478 980 aa10.66□□□□□ -0.7
HPS4-215ENST00000491142 ERICH6Q7L0X2 663 aa10.66□□□□□ -0.7
HPS4-215ENST00000491142 LINS1Q8NG48 757 aa10.66□□□□□ -0.7
HPS4-215ENST00000491142 TDRD7Q8NHU6 1098 aaKnown RBP10.66□□□□□ -0.7
HPS4-215ENST00000491142 DNAAF4Q8WXU2 420 aa10.66□□□□□ -0.7
HPS4-215ENST00000491142 BMP2KQ9NSY1 1161 aaPredicted RBP10.66□□□□□ -0.7
HPS4-215ENST00000491142 SNCAIPQ9Y6H5 919 aa10.66□□□□□ -0.7
HPS4-215ENST00000491142 DLL1O00548 723 aa10.65□□□□□ -0.7
HPS4-215ENST00000491142 IRF6O14896 467 aa10.65□□□□□ -0.7
HPS4-215ENST00000491142 CETPP11597 493 aa10.65□□□□□ -0.7
HPS4-215ENST00000491142 CRKP46108 304 aa10.65□□□□□ -0.7
HPS4-215ENST00000491142 GYG1P46976 350 aa10.65□□□□□ -0.7
HPS4-215ENST00000491142 TNNI2P48788 182 aa10.65□□□□□ -0.7
HPS4-215ENST00000491142 RGS3P49796 1198 aa10.65□□□□□ -0.7
HPS4-215ENST00000491142 CACNB3P54284 484 aa10.65□□□□□ -0.7
HPS4-215ENST00000491142 FKBP5Q13451 457 aaPredicted RBP10.65□□□□□ -0.7
HPS4-215ENST00000491142 EPHA10Q5JZY3 1008 aa10.65□□□□□ -0.7
HPS4-215ENST00000491142 LMBR1LQ6UX01 489 aa10.65□□□□□ -0.7
HPS4-215ENST00000491142 LDHAL6AQ6ZMR3 332 aa10.65□□□□□ -0.7
HPS4-215ENST00000491142 ITPRIPQ8IWB1 547 aa10.65□□□□□ -0.7
HPS4-215ENST00000491142 ZKSCAN4Q969J2 545 aaPredicted RBP10.65□□□□□ -0.7
HPS4-215ENST00000491142 FAM84BQ96KN1 310 aaPredicted RBP10.65□□□□□ -0.7
HPS4-215ENST00000491142 WDHD1O75717 1129 aaPredicted RBP10.64□□□□□ -0.71
HPS4-215ENST00000491142 GNRH1P01148 92 aa10.64□□□□□ -0.71
HPS4-215ENST00000491142 HIBADHP31937 336 aaKnown RBP10.64□□□□□ -0.71
HPS4-215ENST00000491142 SNAPC2Q13487 334 aa10.64□□□□□ -0.71
HPS4-215ENST00000491142 C17orf99Q6UX52 265 aa10.64□□□□□ -0.71
HPS4-215ENST00000491142 UBE2Q1Q7Z7E8 422 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms