RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 APOBEC3HQ6NTF7 200 aaKnown RBP23.93■■□□□ 1.42
SHROOM3-209ENST00000490690 APPBP2Q92624 585 aa23.93■■□□□ 1.42
SHROOM3-209ENST00000490690 PRMT6Q96LA8 375 aaPredicted RBP23.93■■□□□ 1.42
SHROOM3-209ENST00000490690 PPP2R3BQ9Y5P8 575 aa23.93■■□□□ 1.42
SHROOM3-209ENST00000490690 DOCK2Q92608 1830 aa23.93■■□□□ 1.42
SHROOM3-209ENST00000490690 TOMM70O94826 608 aa23.92■■□□□ 1.42
SHROOM3-209ENST00000490690 SULF1Q8IWU6 871 aa23.92■■□□□ 1.42
SHROOM3-209ENST00000490690 MAGEB6P1A0A0J9YX57 407 aa23.91■■□□□ 1.42
SHROOM3-209ENST00000490690 KIF3CO14782 793 aa23.91■■□□□ 1.42
SHROOM3-209ENST00000490690 MFAP1P55081 439 aaKnown RBP23.91■■□□□ 1.42
SHROOM3-209ENST00000490690 NBPF9Q3BBW0 867 aa23.91■■□□□ 1.42
SHROOM3-209ENST00000490690 SMC1BQ8NDV3 1235 aa23.91■■□□□ 1.42
SHROOM3-209ENST00000490690 RBM46Q8TBY0 533 aaKnown RBP23.91■■□□□ 1.42
SHROOM3-209ENST00000490690 AIDAQ96BJ3 306 aa23.91■■□□□ 1.42
SHROOM3-209ENST00000490690 GGA3Q9NZ52 723 aa23.91■■□□□ 1.42
SHROOM3-209ENST00000490690 TCRBV5S4A2TA0A5A2 114 aa23.9■■□□□ 1.42
SHROOM3-209ENST00000490690 NPM3O75607 178 aaKnown RBP23.9■■□□□ 1.42
SHROOM3-209ENST00000490690 GSPT1P15170 499 aaKnown RBP23.9■■□□□ 1.42
SHROOM3-209ENST00000490690 HIRAP54198 1017 aaPredicted RBP23.9■■□□□ 1.42
SHROOM3-209ENST00000490690 CHADLQ6NUI6 762 aa23.9■■□□□ 1.42
SHROOM3-209ENST00000490690 CASC1Q6TDU7 716 aa23.9■■□□□ 1.42
SHROOM3-209ENST00000490690 CDC37L1Q7L3B6 337 aa23.9■■□□□ 1.42
SHROOM3-209ENST00000490690 ZNF384Q8TF68 577 aa23.9■■□□□ 1.42
SHROOM3-209ENST00000490690 HELLSQ9NRZ9 838 aa23.9■■□□□ 1.42
SHROOM3-209ENST00000490690 DIAPH3Q9NSV4 1193 aa23.9■■□□□ 1.42
SHROOM3-209ENST00000490690 USP40Q9NVE5 1235 aa23.9■■□□□ 1.42
SHROOM3-209ENST00000490690 ZNF70Q9UC06 446 aaPredicted RBP23.9■■□□□ 1.42
SHROOM3-209ENST00000490690 EGFRP00533 1210 aa23.89■■□□□ 1.41
SHROOM3-209ENST00000490690 SDSP20132 328 aa23.89■■□□□ 1.41
SHROOM3-209ENST00000490690 ANGEL2Q5VTE6 544 aaKnown RBP23.89■■□□□ 1.41
SHROOM3-209ENST00000490690 FAM83AQ86UY5 434 aa23.89■■□□□ 1.41
SHROOM3-209ENST00000490690 RUFY2Q8WXA3 655 aa23.89■■□□□ 1.41
SHROOM3-209ENST00000490690 DDRGK1Q96HY6 314 aa23.89■■□□□ 1.41
SHROOM3-209ENST00000490690 IDI2Q9BXS1 227 aa23.89■■□□□ 1.41
SHROOM3-209ENST00000490690 CRNKL1Q9BZJ0 848 aaKnown RBP23.89■■□□□ 1.41
SHROOM3-209ENST00000490690 TDRD3Q9H7E2 651 aaKnown RBP23.89■■□□□ 1.41
SHROOM3-209ENST00000490690 VEZTQ9HBM0 779 aa23.89■■□□□ 1.41
SHROOM3-209ENST00000490690 AATFQ9NY61 560 aaKnown RBP eCLIP23.89■■□□□ 1.41
SHROOM3-209ENST00000490690 GNAT2P19087 354 aa23.88■■□□□ 1.41
SHROOM3-209ENST00000490690 FSTL1Q12841 308 aa23.88■■□□□ 1.41
SHROOM3-209ENST00000490690 CDC42EP5Q6NZY7 148 aa23.88■■□□□ 1.41
SHROOM3-209ENST00000490690 HOOK2Q96ED9 719 aa23.88■■□□□ 1.41
SHROOM3-209ENST00000490690 ZMYM1Q5SVZ6 1142 aa23.87■■□□□ 1.41
SHROOM3-209ENST00000490690 TEX11Q8IYF3 940 aa23.87■■□□□ 1.41
SHROOM3-209ENST00000490690 ENTPD3O75355 529 aa23.86■■□□□ 1.41
SHROOM3-209ENST00000490690 KRT26Q7Z3Y9 468 aa23.86■■□□□ 1.41
SHROOM3-209ENST00000490690 MYH2Q9UKX2 1941 aa23.86■■□□□ 1.41
SHROOM3-209ENST00000490690 RAD50Q92878 1312 aa23.85■■□□□ 1.41
SHROOM3-209ENST00000490690 CLRN2A0PK11 232 aa23.85■■□□□ 1.41
SHROOM3-209ENST00000490690 ADGRA1Q86SQ6 560 aa23.85■■□□□ 1.41
SHROOM3-209ENST00000490690 MIGA1Q8NAN2 632 aa23.85■■□□□ 1.41
SHROOM3-209ENST00000490690 RIOK1Q9BRS2 568 aaKnown RBP23.85■■□□□ 1.41
SHROOM3-209ENST00000490690 RPAP1Q9BWH6 1393 aaPredicted RBP23.85■■□□□ 1.41
SHROOM3-209ENST00000490690 EIF5BO60841 1220 aaKnown RBP23.84■■□□□ 1.41
SHROOM3-209ENST00000490690 NF2P35240 595 aa23.84■■□□□ 1.41
SHROOM3-209ENST00000490690 RHBDL3P58872 404 aa23.84■■□□□ 1.41
SHROOM3-209ENST00000490690 MCMDC2Q4G0Z9 681 aa23.84■■□□□ 1.41
SHROOM3-209ENST00000490690 AMOTL1Q8IY63 956 aa23.84■■□□□ 1.41
SHROOM3-209ENST00000490690 MBD4O95243 580 aa23.83■■□□□ 1.41
SHROOM3-209ENST00000490690 USP5P45974 858 aa23.83■■□□□ 1.41
SHROOM3-209ENST00000490690 FAM151AQ8WW52 585 aa23.83■■□□□ 1.41
SHROOM3-209ENST00000490690 DEFB129Q9H1M3 183 aa23.83■■□□□ 1.41
SHROOM3-209ENST00000490690 ATP8A2Q9NTI2 1148 aa23.83■■□□□ 1.41
SHROOM3-209ENST00000490690 PCDHAC2Q9Y5I4 1007 aa23.83■■□□□ 1.41
SHROOM3-209ENST00000490690 ADAMTSL1Q8N6G6 1762 aa23.83■■□□□ 1.4
SHROOM3-209ENST00000490690 SUPT20HL1Q3ZLR7 823 aa23.82■■□□□ 1.4
SHROOM3-209ENST00000490690 GIMAP6Q6P9H5 292 aa23.82■■□□□ 1.4
SHROOM3-209ENST00000490690 SH3RF3Q8TEJ3 882 aaPredicted RBP23.82■■□□□ 1.4
SHROOM3-209ENST00000490690 OSBP2Q969R2 916 aa23.82■■□□□ 1.4
SHROOM3-209ENST00000490690 NACAP1Q9BZK3 213 aa23.82■■□□□ 1.4
SHROOM3-209ENST00000490690 PUS7LQ9H0K6 701 aaKnown RBP23.82■■□□□ 1.4
SHROOM3-209ENST00000490690 DHX36Q9H2U1 1008 aaKnown RBP23.82■■□□□ 1.4
SHROOM3-209ENST00000490690 TAOK2Q9UL54 1235 aa23.82■■□□□ 1.4
SHROOM3-209ENST00000490690 MYH7P12883 1935 aa23.82■■□□□ 1.4
SHROOM3-209ENST00000490690 TCP10L2B9ZVM9 353 aa23.81■■□□□ 1.4
SHROOM3-209ENST00000490690 GPAA1O43292 621 aa23.81■■□□□ 1.4
SHROOM3-209ENST00000490690 ECM29Q5VYK3 1845 aa23.81■■□□□ 1.4
SHROOM3-209ENST00000490690 COL2A1P02458 1487 aaPredicted RBP23.81■■□□□ 1.4
SHROOM3-209ENST00000490690 CDC45O75419 566 aa23.8■■□□□ 1.4
SHROOM3-209ENST00000490690 WDHD1O75717 1129 aaPredicted RBP23.8■■□□□ 1.4
SHROOM3-209ENST00000490690 POTEIP0CG38 1075 aa23.8■■□□□ 1.4
SHROOM3-209ENST00000490690 POTEJP0CG39 1038 aa23.8■■□□□ 1.4
SHROOM3-209ENST00000490690 DYNLL1P63167 89 aaKnown RBP23.8■■□□□ 1.4
SHROOM3-209ENST00000490690 RASA3Q14644 834 aa23.8■■□□□ 1.4
SHROOM3-209ENST00000490690 MAP1SQ66K74 1059 aaPredicted RBP23.8■■□□□ 1.4
SHROOM3-209ENST00000490690 ARMT1Q9H993 441 aa23.8■■□□□ 1.4
SHROOM3-209ENST00000490690 NMIQ13287 307 aaPredicted RBP23.79■■□□□ 1.4
SHROOM3-209ENST00000490690 CWC27Q6UX04 472 aaKnown RBP23.79■■□□□ 1.4
SHROOM3-209ENST00000490690 LCORLQ8N3X6 602 aa23.79■■□□□ 1.4
SHROOM3-209ENST00000490690 TGFBRAP1Q8WUH2 860 aa23.79■■□□□ 1.4
SHROOM3-209ENST00000490690 STRBPQ96SI9 672 aaKnown RBP23.79■■□□□ 1.4
SHROOM3-209ENST00000490690 SLC4A4Q9Y6R1 1079 aa23.79■■□□□ 1.4
SHROOM3-209ENST00000490690 HLA-DOAP06340 250 aa23.78■■□□□ 1.4
SHROOM3-209ENST00000490690 CHMLP26374 656 aa23.78■■□□□ 1.4
SHROOM3-209ENST00000490690 PICALMQ13492 652 aa23.78■■□□□ 1.4
SHROOM3-209ENST00000490690 USP48Q86UV5 1035 aa23.78■■□□□ 1.4
SHROOM3-209ENST00000490690 OSBPL5Q9H0X9 879 aaPredicted RBP23.78■■□□□ 1.4
SHROOM3-209ENST00000490690 ASTN2O75129 1339 aaPredicted RBP23.78■■□□□ 1.4
SHROOM3-209ENST00000490690 FLT1P17948 1338 aa23.78■■□□□ 1.4
SHROOM3-209ENST00000490690 CCDC171Q6TFL3 1326 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms