RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 WDR89Q96FK6 387 aaPredicted RBP6.11□□□□□ -1.43
CPSF3-205ENST00000489629 OSBPL1AQ9BXW6 950 aa6.11□□□□□ -1.43
CPSF3-205ENST00000489629 BCO2Q9BYV7 579 aa6.11□□□□□ -1.43
CPSF3-205ENST00000489629 CCDC86Q9H6F5 360 aaKnown RBP6.11□□□□□ -1.43
CPSF3-205ENST00000489629 TMPRSS2O15393 492 aa6.1□□□□□ -1.43
CPSF3-205ENST00000489629 LIG1P18858 919 aa6.1□□□□□ -1.43
CPSF3-205ENST00000489629 ASPAP45381 313 aa6.1□□□□□ -1.43
CPSF3-205ENST00000489629 FCGRTP55899 365 aa6.1□□□□□ -1.43
CPSF3-205ENST00000489629 PLCB3Q01970 1234 aa6.1□□□□□ -1.43
CPSF3-205ENST00000489629 MAP7Q14244 749 aa6.1□□□□□ -1.43
CPSF3-205ENST00000489629 PDE3AQ14432 1141 aa6.1□□□□□ -1.43
CPSF3-205ENST00000489629 DTHD1Q6ZMT9 781 aa6.1□□□□□ -1.43
CPSF3-205ENST00000489629 PDZD3Q86UT5 571 aa6.1□□□□□ -1.43
CPSF3-205ENST00000489629 TBC1D32Q96NH3 1257 aa6.1□□□□□ -1.43
CPSF3-205ENST00000489629 C1GALT1Q9NS00 363 aa6.1□□□□□ -1.43
CPSF3-205ENST00000489629 NLRP2Q9NX02 1062 aa6.1□□□□□ -1.43
CPSF3-205ENST00000489629 AP4E1Q9UPM8 1137 aa6.1□□□□□ -1.43
CPSF3-205ENST00000489629 PNMA6FA0A0J9YX94 578 aa6.09□□□□□ -1.43
CPSF3-205ENST00000489629 FAM170BA6NMN3 283 aa6.09□□□□□ -1.43
CPSF3-205ENST00000489629 WNT11O96014 354 aa6.09□□□□□ -1.43
CPSF3-205ENST00000489629 XRCC5P13010 732 aaKnown RBP6.09□□□□□ -1.43
CPSF3-205ENST00000489629 RAB6AP20340 208 aa6.09□□□□□ -1.43
CPSF3-205ENST00000489629 MAPK1P28482 360 aa6.09□□□□□ -1.43
CPSF3-205ENST00000489629 KIF4BQ2VIQ3 1234 aa6.09□□□□□ -1.43
CPSF3-205ENST00000489629 METTL22Q9BUU2 404 aaPredicted RBP6.09□□□□□ -1.43
CPSF3-205ENST00000489629 KRT82Q9NSB4 513 aa6.09□□□□□ -1.43
CPSF3-205ENST00000489629 CRIM1Q9NZV1 1036 aa6.09□□□□□ -1.43
CPSF3-205ENST00000489629 PCDHGC5Q9Y5F6 944 aa6.09□□□□□ -1.43
CPSF3-205ENST00000489629 DYNC1LI2O43237 492 aaPredicted RBP6.08□□□□□ -1.44
CPSF3-205ENST00000489629 PRNPP04156 253 aa6.08□□□□□ -1.44
CPSF3-205ENST00000489629 GSTP1P09211 210 aaKnown RBP6.08□□□□□ -1.44
CPSF3-205ENST00000489629 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.08□□□□□ -1.44
CPSF3-205ENST00000489629 NXPE4Q6UWF7 544 aa6.08□□□□□ -1.44
CPSF3-205ENST00000489629 NFXL1Q6ZNB6 911 aa6.08□□□□□ -1.44
CPSF3-205ENST00000489629 STK35Q8TDR2 534 aa6.08□□□□□ -1.44
CPSF3-205ENST00000489629 ZC3H12CQ9C0D7 883 aaKnown RBP6.08□□□□□ -1.44
CPSF3-205ENST00000489629 TMEM39AQ9NV64 488 aa6.08□□□□□ -1.44
CPSF3-205ENST00000489629 PPP4R2Q9NY27 417 aa6.08□□□□□ -1.44
CPSF3-205ENST00000489629 FMR1Q06787 632 aaKnown RBP eCLIP6.07□□□□□ -1.44
CPSF3-205ENST00000489629 C3orf58Q8NDZ4 430 aa6.07□□□□□ -1.44
CPSF3-205ENST00000489629 FANCD2OSQ96PS1 177 aa6.07□□□□□ -1.44
CPSF3-205ENST00000489629 KRTAP4-12Q9BQ66 201 aa6.07□□□□□ -1.44
CPSF3-205ENST00000489629 IVNS1ABPQ9Y6Y0 642 aa6.07□□□□□ -1.44
CPSF3-205ENST00000489629 CYP26A1O43174 497 aa6.06□□□□□ -1.44
CPSF3-205ENST00000489629 SLFN14P0C7P3 912 aa6.06□□□□□ -1.44
CPSF3-205ENST00000489629 IRAK1P51617 712 aa6.06□□□□□ -1.44
CPSF3-205ENST00000489629 ID3Q02535 119 aa6.06□□□□□ -1.44
CPSF3-205ENST00000489629 PPP2R3AQ06190 1150 aa6.06□□□□□ -1.44
CPSF3-205ENST00000489629 KCNA1Q09470 495 aa6.06□□□□□ -1.44
CPSF3-205ENST00000489629 ZNF765Q7L2R6 523 aa6.06□□□□□ -1.44
CPSF3-205ENST00000489629 DISC1Q9NRI5 854 aa6.06□□□□□ -1.44
CPSF3-205ENST00000489629 CCDC39Q9UFE4 941 aa6.06□□□□□ -1.44
CPSF3-205ENST00000489629 GPN3Q9UHW5 284 aaPredicted RBP6.06□□□□□ -1.44
CPSF3-205ENST00000489629 ARNTP27540 789 aa6.05□□□□□ -1.44
CPSF3-205ENST00000489629 CYP27A1Q02318 531 aa6.05□□□□□ -1.44
CPSF3-205ENST00000489629 ZNF252P-AS1Q0IIN9 211 aa6.05□□□□□ -1.44
CPSF3-205ENST00000489629 OGFOD3Q6PK18 319 aa6.05□□□□□ -1.44
CPSF3-205ENST00000489629 SULF2Q8IWU5 870 aa6.05□□□□□ -1.44
CPSF3-205ENST00000489629 FBF1Q8TES7 1133 aa6.05□□□□□ -1.44
CPSF3-205ENST00000489629 ASB16Q96NS5 453 aa6.05□□□□□ -1.44
CPSF3-205ENST00000489629 NECAB3Q96P71 396 aaPredicted RBP6.05□□□□□ -1.44
CPSF3-205ENST00000489629 SETDB2Q96T68 719 aa6.05□□□□□ -1.44
CPSF3-205ENST00000489629 ATXN3LQ9H3M9 355 aa6.05□□□□□ -1.44
CPSF3-205ENST00000489629 CACNA2D2Q9NY47 1150 aa6.05□□□□□ -1.44
CPSF3-205ENST00000489629 ADGRE2Q9UHX3 823 aa6.05□□□□□ -1.44
CPSF3-205ENST00000489629 AKAP2Q9Y2D5 859 aa6.05□□□□□ -1.44
CPSF3-205ENST00000489629 DAGLAQ9Y4D2 1042 aa6.05□□□□□ -1.44
CPSF3-205ENST00000489629 TAL1P17542 331 aaPredicted RBP6.04□□□□□ -1.44
CPSF3-205ENST00000489629 NME2P22392 152 aa6.04□□□□□ -1.44
CPSF3-205ENST00000489629 DUSP27Q5VZP5 1158 aa6.04□□□□□ -1.44
CPSF3-205ENST00000489629 ZSCAN29Q8IWY8 852 aaPredicted RBP6.04□□□□□ -1.44
CPSF3-205ENST00000489629 OSBPL7Q9BZF2 842 aa6.04□□□□□ -1.44
CPSF3-205ENST00000489629 LGR6Q9HBX8 967 aa6.04□□□□□ -1.44
CPSF3-205ENST00000489629 ZC3H7BQ9UGR2 993 aaKnown RBP6.04□□□□□ -1.44
CPSF3-205ENST00000489629 MAPK8P45983 427 aa6.03□□□□□ -1.44
CPSF3-205ENST00000489629 TTLL4Q14679 1199 aa6.03□□□□□ -1.44
CPSF3-205ENST00000489629 ZC3H12AQ5D1E8 599 aaKnown RBP6.03□□□□□ -1.44
CPSF3-205ENST00000489629 VSIG10LQ86VR7 867 aa6.03□□□□□ -1.44
CPSF3-205ENST00000489629 ANKRD24Q8TF21 1146 aa6.03□□□□□ -1.44
CPSF3-205ENST00000489629 KCNB2Q92953 911 aa6.03□□□□□ -1.44
CPSF3-205ENST00000489629 FMNL2Q96PY5 1086 aa6.03□□□□□ -1.44
CPSF3-205ENST00000489629 BSDC1Q9NW68 430 aaPredicted RBP6.03□□□□□ -1.44
CPSF3-205ENST00000489629 WWC3Q9ULE0 1092 aa6.03□□□□□ -1.44
CPSF3-205ENST00000489629 NEFMP07197 916 aa6.02□□□□□ -1.45
CPSF3-205ENST00000489629 BMP6P22004 513 aa6.02□□□□□ -1.45
CPSF3-205ENST00000489629 GSTT1P30711 240 aa6.02□□□□□ -1.45
CPSF3-205ENST00000489629 COL19A1Q14993 1142 aa6.02□□□□□ -1.45
CPSF3-205ENST00000489629 ALG1LQ6GMV1 187 aa6.02□□□□□ -1.45
CPSF3-205ENST00000489629 MPRIPQ6WCQ1 1025 aa6.02□□□□□ -1.45
CPSF3-205ENST00000489629 SMYD4Q8IYR2 804 aaPredicted RBP6.02□□□□□ -1.45
CPSF3-205ENST00000489629 ABI1Q8IZP0 508 aa6.02□□□□□ -1.45
CPSF3-205ENST00000489629 TRAIPQ9BWF2 469 aa6.02□□□□□ -1.45
CPSF3-205ENST00000489629 EMILIN2Q9BXX0 1053 aa6.02□□□□□ -1.45
CPSF3-205ENST00000489629 SRCIN1Q9C0H9 1055 aa6.02□□□□□ -1.45
CPSF3-205ENST00000489629 PIDD1Q9HB75 910 aa6.02□□□□□ -1.45
CPSF3-205ENST00000489629 ANGEL1Q9UNK9 670 aaKnown RBP6.02□□□□□ -1.45
CPSF3-205ENST00000489629 ENC1O14682 589 aa6.01□□□□□ -1.45
CPSF3-205ENST00000489629 GIPC1O14908 333 aa6.01□□□□□ -1.45
CPSF3-205ENST00000489629 CDK5R2Q13319 367 aa6.01□□□□□ -1.45
CPSF3-205ENST00000489629 CBLL1Q75N03 491 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms