RNA–Protein interactions for RNA: ENST00000487890.5

GPNMB-212, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-212ENST00000487890 NUCKS1Q9H1E3 243 aaKnown RBP4.72□□□□□ -1.65
GPNMB-212ENST00000487890 IFT57Q9NWB7 429 aa4.72□□□□□ -1.65
GPNMB-212ENST00000487890 GPN3Q9UHW5 284 aaPredicted RBP4.72□□□□□ -1.65
GPNMB-212ENST00000487890 MSRB2Q9Y3D2 182 aa4.72□□□□□ -1.65
GPNMB-212ENST00000487890 NUP153P49790 1475 aaKnown RBP4.72□□□□□ -1.65
GPNMB-212ENST00000487890 COL17A1Q9UMD9 1497 aaPredicted RBP4.72□□□□□ -1.65
GPNMB-212ENST00000487890 ABCA9Q8IUA7 1624 aa4.72□□□□□ -1.65
GPNMB-212ENST00000487890 MAGI3Q5TCQ9 1506 aa4.72□□□□□ -1.65
GPNMB-212ENST00000487890 hCG_2014768A0A024R1R8 64 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 PLEKHD1A6NEE1 506 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 SOBPA7XYQ1 873 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 CILPO75339 1184 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 AVPP01185 164 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 MCM4P33991 863 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 CLCQ05315 142 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 SEPT6Q14141 434 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 ZNF423Q2M1K9 1284 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.71□□□□□ -1.66
GPNMB-212ENST00000487890 RNF187Q5TA31 235 aaPredicted RBP4.71□□□□□ -1.66
GPNMB-212ENST00000487890 FBXW10Q5XX13 1052 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 ADAMTSL4Q6UY14 1074 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 FILIP1Q7Z7B0 1213 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 CCDC84Q86UT8 332 aaPredicted RBP4.71□□□□□ -1.66
GPNMB-212ENST00000487890 MICAL1Q8TDZ2 1067 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 SH3TC2Q8TF17 1288 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 ABHD17AQ96GS6 310 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 FERD3LQ96RJ6 166 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 POP1Q99575 1024 aaKnown RBP4.71□□□□□ -1.66
GPNMB-212ENST00000487890 CHMP4AQ9BY43 222 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 TNKS2Q9H2K2 1166 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 BRMS1Q9HCU9 246 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 TMEM39AQ9NV64 488 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 HECW1Q76N89 1606 aa4.71□□□□□ -1.66
GPNMB-212ENST00000487890 CDK13Q14004 1512 aaKnown RBP4.71□□□□□ -1.66
GPNMB-212ENST00000487890 CFAP74Q9C0B2 1584 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 ESYT3A0FGR9 886 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 SLC35F4A4IF30 521 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 FAM187AA6NFU0 413 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 MARCH6O60337 910 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 PTPN11Q06124 597 aaPredicted RBP4.7□□□□□ -1.66
GPNMB-212ENST00000487890 MPP2Q14168 576 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 DDR2Q16832 855 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 TNNI3KQ59H18 835 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 GK5Q6ZS86 529 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 GRIN3AQ8TCU5 1115 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 TRPM4Q8TD43 1214 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 CRBNQ96SW2 442 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 BRINP2Q9C0B6 783 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 MIR1-1HGQ9H1L0 117 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 EFCC1Q9HA90 598 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 FANCLQ9NW38 375 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 ACTR10Q9NZ32 417 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 PDZRN3Q9UPQ7 1066 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 NOP58Q9Y2X3 529 aaKnown RBP4.7□□□□□ -1.66
GPNMB-212ENST00000487890 COL4A3BPQ9Y5P4 624 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 ARID4BQ4LE39 1312 aaPredicted RBP4.7□□□□□ -1.66
GPNMB-212ENST00000487890 TTC37Q6PGP7 1564 aa4.7□□□□□ -1.66
GPNMB-212ENST00000487890 MYO5CQ9NQX4 1742 aa4.69□□□□□ -1.66
GPNMB-212ENST00000487890 MAN1A2O60476 641 aa4.69□□□□□ -1.66
GPNMB-212ENST00000487890 RAPGEF3O95398 923 aa4.69□□□□□ -1.66
GPNMB-212ENST00000487890 IBSPP21815 317 aaPredicted RBP4.69□□□□□ -1.66
GPNMB-212ENST00000487890 NME2P22392 152 aa4.69□□□□□ -1.66
GPNMB-212ENST00000487890 ZNF165P49910 485 aa4.69□□□□□ -1.66
GPNMB-212ENST00000487890 GPLD1P80108 840 aa4.69□□□□□ -1.66
GPNMB-212ENST00000487890 PTSQ03393 145 aa4.69□□□□□ -1.66
GPNMB-212ENST00000487890 PCDH1Q08174 1060 aa4.69□□□□□ -1.66
GPNMB-212ENST00000487890 CWF19L2Q2TBE0 894 aaKnown RBP4.69□□□□□ -1.66
GPNMB-212ENST00000487890 REC114Q7Z4M0 266 aa4.69□□□□□ -1.66
GPNMB-212ENST00000487890 REXO1Q8N1G1 1221 aaKnown RBP4.69□□□□□ -1.66
GPNMB-212ENST00000487890 CLEC4MQ9H2X3 399 aaPredicted RBP4.69□□□□□ -1.66
GPNMB-212ENST00000487890 IGFLR1Q9H665 355 aa4.69□□□□□ -1.66
GPNMB-212ENST00000487890 PCDH12Q9NPG4 1184 aa4.69□□□□□ -1.66
GPNMB-212ENST00000487890 CYP8B1Q9UNU6 501 aa4.69□□□□□ -1.66
GPNMB-212ENST00000487890 ARAP3Q8WWN8 1544 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 H7C1W4 665 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 PDPK1O15530 556 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 DNAJC6O75061 913 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 CDC45O75419 566 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 TRIM37O94972 964 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 B3GALT4O96024 378 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 LMNB1P20700 586 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 ARNTP27540 789 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 SMCPP49901 116 aaPredicted RBP4.68□□□□□ -1.66
GPNMB-212ENST00000487890 ANAPC15P60006 121 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 CTBSQ01459 385 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 PPP2R3AQ06190 1150 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 SQSTM1Q13501 440 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 RASGRF1Q13972 1273 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 LARP1BQ659C4 914 aaKnown RBP4.68□□□□□ -1.66
GPNMB-212ENST00000487890 CEP135Q66GS9 1140 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 MPRIPQ6WCQ1 1025 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 RUFY4Q6ZNE9 571 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 VN1R5Q7Z5H4 357 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 TRIM22Q8IYM9 498 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 ZCRB1Q8TBF4 217 aaKnown RBP4.68□□□□□ -1.66
GPNMB-212ENST00000487890 BSNDQ8WZ55 320 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 GTPBP3Q969Y2 492 aaKnown RBP4.68□□□□□ -1.66
GPNMB-212ENST00000487890 SPC25Q9HBM1 224 aa4.68□□□□□ -1.66
GPNMB-212ENST00000487890 DNAJB12Q9NXW2 375 aaKnown RBP4.68□□□□□ -1.66
GPNMB-212ENST00000487890 ZNRF3Q9ULT6 936 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms