RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 LAMA3Q16787 3333 aa19.4■□□□□ 0.7
MCF2L-228ENST00000487354 ECM2O94769 699 aaPredicted RBP19.39■□□□□ 0.69
MCF2L-228ENST00000487354 BCAMP50895 628 aa19.39■□□□□ 0.69
MCF2L-228ENST00000487354 SLC4A10Q6U841 1118 aa19.39■□□□□ 0.69
MCF2L-228ENST00000487354 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.39■□□□□ 0.69
MCF2L-228ENST00000487354 PRO3102Q9H379 93 aa19.39■□□□□ 0.69
MCF2L-228ENST00000487354 SRRDQ9UH36 339 aa19.39■□□□□ 0.69
MCF2L-228ENST00000487354 KCNH4Q9UQ05 1017 aa19.39■□□□□ 0.69
MCF2L-228ENST00000487354 SALL2Q9Y467 1007 aaPredicted RBP19.39■□□□□ 0.69
MCF2L-228ENST00000487354 PDE8BO95263 885 aa19.38■□□□□ 0.69
MCF2L-228ENST00000487354 FGFR2P21802 821 aa19.38■□□□□ 0.69
MCF2L-228ENST00000487354 OSBPP22059 807 aa19.38■□□□□ 0.69
MCF2L-228ENST00000487354 PRMT2P55345 433 aa19.38■□□□□ 0.69
MCF2L-228ENST00000487354 PPATQ06203 517 aa19.38■□□□□ 0.69
MCF2L-228ENST00000487354 KIF22Q14807 665 aa19.38■□□□□ 0.69
MCF2L-228ENST00000487354 CHRDL2Q6WN34 429 aa19.38■□□□□ 0.69
MCF2L-228ENST00000487354 MIGA2Q7L4E1 593 aa19.38■□□□□ 0.69
MCF2L-228ENST00000487354 ANKRD23Q86SG2 305 aa19.38■□□□□ 0.69
MCF2L-228ENST00000487354 KLHDC4Q8TBB5 520 aa19.38■□□□□ 0.69
MCF2L-228ENST00000487354 ZNF112Q9UJU3 913 aa19.38■□□□□ 0.69
MCF2L-228ENST00000487354 KIF16BQ96L93 1317 aa19.37■□□□□ 0.69
MCF2L-228ENST00000487354 METTL24Q5JXM2 366 aa19.37■□□□□ 0.69
MCF2L-228ENST00000487354 HHIPL2Q6UWX4 724 aa19.37■□□□□ 0.69
MCF2L-228ENST00000487354 VPS37DQ86XT2 251 aa19.37■□□□□ 0.69
MCF2L-228ENST00000487354 RBM27Q9P2N5 1060 aaKnown RBP19.37■□□□□ 0.69
MCF2L-228ENST00000487354 ATRNL1Q5VV63 1379 aa19.36■□□□□ 0.69
MCF2L-228ENST00000487354 PSMC4P43686 418 aa19.36■□□□□ 0.69
MCF2L-228ENST00000487354 ZNF341Q9BYN7 854 aa19.36■□□□□ 0.69
MCF2L-228ENST00000487354 SUGT1Q9Y2Z0 365 aa19.36■□□□□ 0.69
MCF2L-228ENST00000487354 COL6A3P12111 3177 aa19.36■□□□□ 0.69
MCF2L-228ENST00000487354 DOCK3Q8IZD9 2030 aa19.35■□□□□ 0.69
MCF2L-228ENST00000487354 MYH2Q9UKX2 1941 aa19.35■□□□□ 0.69
MCF2L-228ENST00000487354 DOCK1Q14185 1865 aa19.35■□□□□ 0.69
MCF2L-228ENST00000487354 MAST3O60307 1309 aa19.35■□□□□ 0.69
MCF2L-228ENST00000487354 PDHXO00330 501 aa19.35■□□□□ 0.69
MCF2L-228ENST00000487354 NFIAQ12857 509 aa19.35■□□□□ 0.69
MCF2L-228ENST00000487354 CAVIN4Q5BKX8 364 aa19.35■□□□□ 0.69
MCF2L-228ENST00000487354 DCAF15Q66K64 600 aa19.35■□□□□ 0.69
MCF2L-228ENST00000487354 TMOD2Q9NZR1 351 aa19.35■□□□□ 0.69
MCF2L-228ENST00000487354 MYPNQ86TC9 1320 aa19.34■□□□□ 0.69
MCF2L-228ENST00000487354 WDHD1O75717 1129 aaPredicted RBP19.34■□□□□ 0.69
MCF2L-228ENST00000487354 BCRP11274 1271 aa19.34■□□□□ 0.69
MCF2L-228ENST00000487354 GJA8P48165 433 aa19.34■□□□□ 0.69
MCF2L-228ENST00000487354 NOL9Q5SY16 702 aaKnown RBP19.34■□□□□ 0.69
MCF2L-228ENST00000487354 GPAT2Q6NUI2 795 aa19.34■□□□□ 0.69
MCF2L-228ENST00000487354 FAM151AQ8WW52 585 aa19.34■□□□□ 0.69
MCF2L-228ENST00000487354 HOOK2Q96ED9 719 aa19.34■□□□□ 0.69
MCF2L-228ENST00000487354 DAGLAQ9Y4D2 1042 aa19.34■□□□□ 0.69
MCF2L-228ENST00000487354 CCL5P13501 91 aa19.33■□□□□ 0.68
MCF2L-228ENST00000487354 GRK4P32298 578 aa19.33■□□□□ 0.68
MCF2L-228ENST00000487354 RFX5P48382 616 aaPredicted RBP19.33■□□□□ 0.68
MCF2L-228ENST00000487354 FAM198AQ9UFP1 575 aa19.33■□□□□ 0.68
MCF2L-228ENST00000487354 RFX7Q2KHR2 1363 aa19.32■□□□□ 0.68
MCF2L-228ENST00000487354 FRAT2O75474 233 aaPredicted RBP19.32■□□□□ 0.68
MCF2L-228ENST00000487354 GJB1P08034 283 aa19.32■□□□□ 0.68
MCF2L-228ENST00000487354 PRKCZQ05513 592 aa19.32■□□□□ 0.68
MCF2L-228ENST00000487354 PUM3Q15397 648 aaKnown RBP19.32■□□□□ 0.68
MCF2L-228ENST00000487354 DIXDC1Q155Q3 683 aa19.32■□□□□ 0.68
MCF2L-228ENST00000487354 CDC42EP5Q6NZY7 148 aa19.32■□□□□ 0.68
MCF2L-228ENST00000487354 MRS2Q9HD23 443 aa19.32■□□□□ 0.68
MCF2L-228ENST00000487354 TCP10Q12799 353 aa19.31■□□□□ 0.68
MCF2L-228ENST00000487354 ZFPM1Q8IX07 1006 aa19.31■□□□□ 0.68
MCF2L-228ENST00000487354 GABRQQ9UN88 632 aa19.31■□□□□ 0.68
MCF2L-228ENST00000487354 FMNL1O95466 1100 aaPredicted RBP19.3■□□□□ 0.68
MCF2L-228ENST00000487354 CYP2C8P10632 490 aa19.3■□□□□ 0.68
MCF2L-228ENST00000487354 PRDX5P30044 214 aa19.3■□□□□ 0.68
MCF2L-228ENST00000487354 RAET1EQ8TD07 263 aa19.3■□□□□ 0.68
MCF2L-228ENST00000487354 DPF3Q92784 378 aa19.3■□□□□ 0.68
MCF2L-228ENST00000487354 LOC285556D6RIA3 1793 aa19.29■□□□□ 0.68
MCF2L-228ENST00000487354 ZNF521Q96K83 1311 aa19.29■□□□□ 0.68
MCF2L-228ENST00000487354 PHF20L1A8MW92 1017 aa19.29■□□□□ 0.68
MCF2L-228ENST00000487354 MRPL50Q8N5N7 158 aaKnown RBP19.29■□□□□ 0.68
MCF2L-228ENST00000487354 NKX2-3Q8TAU0 364 aa19.29■□□□□ 0.68
MCF2L-228ENST00000487354 USP44Q9H0E7 712 aa19.29■□□□□ 0.68
MCF2L-228ENST00000487354 UNC93B1Q9H1C4 597 aa19.29■□□□□ 0.68
MCF2L-228ENST00000487354 ATAD5Q96QE3 1844 aa19.28■□□□□ 0.68
MCF2L-228ENST00000487354 ZBTB7BO15156 539 aaPredicted RBP19.28■□□□□ 0.68
MCF2L-228ENST00000487354 IFIT1P09914 478 aaKnown RBP19.28■□□□□ 0.68
MCF2L-228ENST00000487354 HOXD10P28358 340 aa19.28■□□□□ 0.68
MCF2L-228ENST00000487354 ATG9AQ7Z3C6 839 aa19.28■□□□□ 0.68
MCF2L-228ENST00000487354 WDR66Q8TBY9 1149 aa19.28■□□□□ 0.68
MCF2L-228ENST00000487354 U2AF1L4Q8WU68 220 aaKnown RBP19.28■□□□□ 0.68
MCF2L-228ENST00000487354 PARK7Q99497 189 aaKnown RBP19.28■□□□□ 0.68
MCF2L-228ENST00000487354 RNF208Q9H0X6 261 aa19.28■□□□□ 0.68
MCF2L-228ENST00000487354 A0A0G2JLL6 359 aaPredicted RBP19.27■□□□□ 0.68
MCF2L-228ENST00000487354 EYA2O00167 538 aa19.27■□□□□ 0.68
MCF2L-228ENST00000487354 SLURP2P0DP57 97 aa19.27■□□□□ 0.68
MCF2L-228ENST00000487354 PRRT2Q7Z6L0 340 aaPredicted RBP19.27■□□□□ 0.68
MCF2L-228ENST00000487354 PLXNB2O15031 1838 aa19.27■□□□□ 0.68
MCF2L-228ENST00000487354 CXCL11O14625 94 aa19.26■□□□□ 0.67
MCF2L-228ENST00000487354 FARP2O94887 1054 aaPredicted RBP19.26■□□□□ 0.67
MCF2L-228ENST00000487354 FCGRTP55899 365 aa19.26■□□□□ 0.67
MCF2L-228ENST00000487354 SH3BP5LQ7L8J4 393 aa19.26■□□□□ 0.67
MCF2L-228ENST00000487354 SLAIN1Q8ND83 568 aa19.26■□□□□ 0.67
MCF2L-228ENST00000487354 LPIN2Q92539 896 aa19.26■□□□□ 0.67
MCF2L-228ENST00000487354 SOX1O00570 391 aaPredicted RBP19.25■□□□□ 0.67
MCF2L-228ENST00000487354 SLC5A1P13866 664 aa19.25■□□□□ 0.67
MCF2L-228ENST00000487354 HTATIP2Q9BUP3 242 aa19.25■□□□□ 0.67
MCF2L-228ENST00000487354 SALL1Q9NSC2 1324 aa19.25■□□□□ 0.67
MCF2L-228ENST00000487354 SGPL1O95470 568 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms