RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 FAM174AQ8TBP5 190 aa8.82□□□□□ -1
HDAC3-209ENST00000486618 PCGF6Q9BYE7 350 aa8.82□□□□□ -1
HDAC3-209ENST00000486618 PGAP2Q9UHJ9 254 aa8.82□□□□□ -1
HDAC3-209ENST00000486618 ZNRF3Q9ULT6 936 aa8.82□□□□□ -1
HDAC3-209ENST00000486618 NPC1L1Q9UHC9 1359 aa8.82□□□□□ -1
HDAC3-209ENST00000486618 COL3A1P02461 1466 aaPredicted RBP8.82□□□□□ -1
HDAC3-209ENST00000486618 MAP3K15Q6ZN16 1313 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 CDHR2Q9BYE9 1310 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 RIC1Q4ADV7 1423 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 TCERG1O14776 1098 aaKnown RBP8.81□□□□□ -1
HDAC3-209ENST00000486618 PTMSP20962 102 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 CXCL9Q07325 125 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 TNIP1Q15025 636 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 AGERQ15109 404 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 AOC3Q16853 763 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 CIAPIN1Q6FI81 312 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 MCM10Q7L590 875 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 PPP1R42Q7Z4L9 355 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 BPHLQ86WA6 291 aaPredicted RBP8.81□□□□□ -1
HDAC3-209ENST00000486618 TEX2Q8IWB9 1127 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 CCDC82Q8N4S0 544 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 NGEFQ8N5V2 710 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 ARMC2Q8NEN0 867 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 NLRP3Q96P20 1036 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 PLCD4Q9BRC7 762 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 BCL2L13Q9BXK5 485 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 GLIS2Q9BZE0 524 aaPredicted RBP8.81□□□□□ -1
HDAC3-209ENST00000486618 ZNF408Q9H9D4 720 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 ABCC12Q96J65 1359 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 IBTKQ9P2D0 1353 aaPredicted RBP8.81□□□□□ -1
HDAC3-209ENST00000486618 COL4A5P29400 1685 aa8.81□□□□□ -1
HDAC3-209ENST00000486618 GPTP24298 496 aa8.8□□□□□ -1
HDAC3-209ENST00000486618 GMPSP49915 693 aaPredicted RBP8.8□□□□□ -1
HDAC3-209ENST00000486618 NNTQ13423 1086 aa8.8□□□□□ -1
HDAC3-209ENST00000486618 CCDC27Q2M243 656 aa8.8□□□□□ -1
HDAC3-209ENST00000486618 SH3RF1Q7Z6J0 888 aa8.8□□□□□ -1
HDAC3-209ENST00000486618 PNISRQ8TF01 805 aaKnown RBP8.8□□□□□ -1
HDAC3-209ENST00000486618 LRRN4Q8WUT4 740 aa8.8□□□□□ -1
HDAC3-209ENST00000486618 RRP7AQ9Y3A4 280 aaKnown RBP8.8□□□□□ -1
HDAC3-209ENST00000486618 ATP6V0A2Q9Y487 856 aa8.8□□□□□ -1
HDAC3-209ENST00000486618 H7C1D1 291 aa8.79□□□□□ -1
HDAC3-209ENST00000486618 BBOX1O75936 387 aa8.79□□□□□ -1
HDAC3-209ENST00000486618 NEFMP07197 916 aa8.79□□□□□ -1
HDAC3-209ENST00000486618 U2AF1L5P0DN76 240 aaPredicted RBP8.79□□□□□ -1
HDAC3-209ENST00000486618 HUNKP57058 714 aa8.79□□□□□ -1
HDAC3-209ENST00000486618 U2AF1Q01081 240 aaKnown RBP eCLIP8.79□□□□□ -1
HDAC3-209ENST00000486618 CNGB1Q14028 1251 aaPredicted RBP8.79□□□□□ -1
HDAC3-209ENST00000486618 PARP10Q53GL7 1025 aa8.79□□□□□ -1
HDAC3-209ENST00000486618 SUSD4Q5VX71 490 aa8.79□□□□□ -1
HDAC3-209ENST00000486618 DPP8Q6V1X1 898 aaPredicted RBP8.79□□□□□ -1
HDAC3-209ENST00000486618 SH3BP5LQ7L8J4 393 aa8.79□□□□□ -1
HDAC3-209ENST00000486618 CDK15Q96Q40 435 aa8.79□□□□□ -1
HDAC3-209ENST00000486618 RTFDC1Q9BY42 306 aaPredicted RBP8.79□□□□□ -1
HDAC3-209ENST00000486618 PRDM16Q9HAZ2 1276 aa8.79□□□□□ -1
HDAC3-209ENST00000486618 CAPN5O15484 640 aaPredicted RBP8.78□□□□□ -1
HDAC3-209ENST00000486618 NTSR2O95665 410 aa8.78□□□□□ -1
HDAC3-209ENST00000486618 ADH1CP00326 375 aa8.78□□□□□ -1
HDAC3-209ENST00000486618 MYL6BP14649 208 aa8.78□□□□□ -1
HDAC3-209ENST00000486618 KIAA2012Q0VF49 1180 aa8.78□□□□□ -1
HDAC3-209ENST00000486618 DCTN1Q14203 1278 aa8.78□□□□□ -1
HDAC3-209ENST00000486618 SLC10A5Q5PT55 438 aa8.78□□□□□ -1
HDAC3-209ENST00000486618 TTLL7Q6ZT98 887 aa8.78□□□□□ -1
HDAC3-209ENST00000486618 SP8Q8IXZ3 490 aa8.78□□□□□ -1
HDAC3-209ENST00000486618 ZNF34Q8IZ26 560 aa8.78□□□□□ -1
HDAC3-209ENST00000486618 SAGE1Q9NXZ1 904 aa8.78□□□□□ -1
HDAC3-209ENST00000486618 CNOT7Q9UIV1 285 aaKnown RBP8.78□□□□□ -1
HDAC3-209ENST00000486618 POLR2AP24928 1970 aaKnown RBP8.78□□□□□ -1
HDAC3-209ENST00000486618 LAMB4A4D0S4 1761 aa8.78□□□□□ -1
HDAC3-209ENST00000486618 AKAP11Q9UKA4 1901 aa8.78□□□□□ -1
HDAC3-209ENST00000486618 UBN2Q6ZU65 1347 aa8.78□□□□□ -1
HDAC3-209ENST00000486618 AP1G2O75843 785 aa8.77□□□□□ -1.01
HDAC3-209ENST00000486618 BMP1P13497 986 aa8.77□□□□□ -1.01
HDAC3-209ENST00000486618 HIRAP54198 1017 aaPredicted RBP8.77□□□□□ -1.01
HDAC3-209ENST00000486618 ARID5BQ14865 1188 aa8.77□□□□□ -1.01
HDAC3-209ENST00000486618 RGMBQ6NW40 437 aa8.77□□□□□ -1.01
HDAC3-209ENST00000486618 USP48Q86UV5 1035 aa8.77□□□□□ -1.01
HDAC3-209ENST00000486618 C2orf69Q8N8R5 385 aa8.77□□□□□ -1.01
HDAC3-209ENST00000486618 TRIM47Q96LD4 638 aa8.77□□□□□ -1.01
HDAC3-209ENST00000486618 UTP14AQ9BVJ6 771 aaKnown RBP8.77□□□□□ -1.01
HDAC3-209ENST00000486618 C1QTNF2Q9BXJ5 285 aa8.77□□□□□ -1.01
HDAC3-209ENST00000486618 GOPCQ9HD26 462 aa8.77□□□□□ -1.01
HDAC3-209ENST00000486618 MIS18AQ9NYP9 233 aa8.77□□□□□ -1.01
HDAC3-209ENST00000486618 ERBB4Q15303 1308 aa8.77□□□□□ -1.01
HDAC3-209ENST00000486618 RAD17O75943 681 aa8.76□□□□□ -1.01
HDAC3-209ENST00000486618 SNRPBP14678 240 aaKnown RBP8.76□□□□□ -1.01
HDAC3-209ENST00000486618 KIF23Q02241 960 aaPredicted RBP8.76□□□□□ -1.01
HDAC3-209ENST00000486618 NR6A1Q15406 480 aa8.76□□□□□ -1.01
HDAC3-209ENST00000486618 DDX46Q7L014 1031 aaKnown RBP8.76□□□□□ -1.01
HDAC3-209ENST00000486618 TMC4Q7Z404 712 aa8.76□□□□□ -1.01
HDAC3-209ENST00000486618 TRPM4Q8TD43 1214 aa8.76□□□□□ -1.01
HDAC3-209ENST00000486618 DPF2Q92785 391 aa8.76□□□□□ -1.01
HDAC3-209ENST00000486618 GPKOWQ92917 476 aaPredicted RBP eCLIP8.76□□□□□ -1.01
HDAC3-209ENST00000486618 ZIC5Q96T25 663 aa8.76□□□□□ -1.01
HDAC3-209ENST00000486618 SENP2Q9HC62 589 aa8.76□□□□□ -1.01
HDAC3-209ENST00000486618 GBA2Q9HCG7 927 aaPredicted RBP8.76□□□□□ -1.01
HDAC3-209ENST00000486618 ABCC4O15439 1325 aa8.76□□□□□ -1.01
HDAC3-209ENST00000486618 MAGEB6P1A0A0J9YX57 407 aa8.75□□□□□ -1.01
HDAC3-209ENST00000486618 ZNF157P51786 506 aaPredicted RBP8.75□□□□□ -1.01
HDAC3-209ENST00000486618 SOX10P56693 466 aa8.75□□□□□ -1.01
HDAC3-209ENST00000486618 EIF4A1P60842 406 aaKnown RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms