RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 SUPT20HL1Q3ZLR7 823 aa8.69□□□□□ -1.02
VPS50-218ENST00000485994 COL13A1Q5TAT6 717 aaPredicted RBP8.69□□□□□ -1.02
VPS50-218ENST00000485994 SSH3Q8TE77 659 aa8.69□□□□□ -1.02
VPS50-218ENST00000485994 CLUAP1Q96AJ1 413 aa8.69□□□□□ -1.02
VPS50-218ENST00000485994 ZDHHC15Q96MV8 337 aa8.69□□□□□ -1.02
VPS50-218ENST00000485994 BEGAINQ9BUH8 593 aa8.69□□□□□ -1.02
VPS50-218ENST00000485994 GPR108Q9NPR9 543 aa8.69□□□□□ -1.02
VPS50-218ENST00000485994 GNL3LQ9NVN8 582 aaKnown RBP8.69□□□□□ -1.02
VPS50-218ENST00000485994 DENND2AQ9ULE3 1009 aa8.69□□□□□ -1.02
VPS50-218ENST00000485994 TTF2Q9UNY4 1162 aaKnown RBP8.69□□□□□ -1.02
VPS50-218ENST00000485994 TNNQ9UQP3 1299 aa8.69□□□□□ -1.02
VPS50-218ENST00000485994 NOP58Q9Y2X3 529 aaKnown RBP8.69□□□□□ -1.02
VPS50-218ENST00000485994 MAST3O60307 1309 aa8.69□□□□□ -1.02
VPS50-218ENST00000485994 PDS5AQ29RF7 1337 aaKnown RBP8.69□□□□□ -1.02
VPS50-218ENST00000485994 AOC2O75106 756 aa8.68□□□□□ -1.02
VPS50-218ENST00000485994 SLC10A3P09131 477 aa8.68□□□□□ -1.02
VPS50-218ENST00000485994 CRKP46108 304 aa8.68□□□□□ -1.02
VPS50-218ENST00000485994 G3BP1Q13283 466 aaKnown RBP eCLIP8.68□□□□□ -1.02
VPS50-218ENST00000485994 TNFAIP1Q13829 316 aa8.68□□□□□ -1.02
VPS50-218ENST00000485994 ARMC9Q7Z3E5 817 aa8.68□□□□□ -1.02
VPS50-218ENST00000485994 EFCAB3Q8N7B9 438 aa8.68□□□□□ -1.02
VPS50-218ENST00000485994 SIL1Q9H173 461 aa8.68□□□□□ -1.02
VPS50-218ENST00000485994 ZNF70Q9UC06 446 aaPredicted RBP8.68□□□□□ -1.02
VPS50-218ENST00000485994 PA2G4Q9UQ80 394 aaKnown RBP8.68□□□□□ -1.02
VPS50-218ENST00000485994 PAPPA2Q9BXP8 1791 aa8.68□□□□□ -1.02
VPS50-218ENST00000485994 AKAP11Q9UKA4 1901 aa8.68□□□□□ -1.02
VPS50-218ENST00000485994 PNMA6EA0A0J9YXQ4 647 aa8.67□□□□□ -1.02
VPS50-218ENST00000485994 F8W031 263 aaPredicted RBP8.67□□□□□ -1.02
VPS50-218ENST00000485994 PPP1R12BO60237 982 aaPredicted RBP8.67□□□□□ -1.02
VPS50-218ENST00000485994 HSPA8P11142 646 aaKnown RBP8.67□□□□□ -1.02
VPS50-218ENST00000485994 RLBP1P12271 317 aa8.67□□□□□ -1.02
VPS50-218ENST00000485994 TM4SF4P48230 202 aa8.67□□□□□ -1.02
VPS50-218ENST00000485994 INHBEP58166 350 aa8.67□□□□□ -1.02
VPS50-218ENST00000485994 TIMM10P62072 90 aa8.67□□□□□ -1.02
VPS50-218ENST00000485994 PRAMEF18Q5VWM3 479 aa8.67□□□□□ -1.02
VPS50-218ENST00000485994 CCDC102BQ68D86 513 aa8.67□□□□□ -1.02
VPS50-218ENST00000485994 APOBEC3HQ6NTF7 200 aaKnown RBP8.67□□□□□ -1.02
VPS50-218ENST00000485994 PAXIP1Q6ZW49 1069 aaPredicted RBP8.67□□□□□ -1.02
VPS50-218ENST00000485994 FAM83AQ86UY5 434 aa8.67□□□□□ -1.02
VPS50-218ENST00000485994 FTSJ3Q8IY81 847 aaKnown RBP8.67□□□□□ -1.02
VPS50-218ENST00000485994 TEKT1Q969V4 418 aa8.67□□□□□ -1.02
VPS50-218ENST00000485994 CSRNP1Q96S65 589 aa8.67□□□□□ -1.02
VPS50-218ENST00000485994 SAGE1Q9NXZ1 904 aa8.67□□□□□ -1.02
VPS50-218ENST00000485994 CIZ1Q9ULV3 898 aaPredicted RBP8.67□□□□□ -1.02
VPS50-218ENST00000485994 PCDHAC2Q9Y5I4 1007 aa8.67□□□□□ -1.02
VPS50-218ENST00000485994 MYH13Q9UKX3 1938 aa8.66□□□□□ -1.02
VPS50-218ENST00000485994 ARAP2Q8WZ64 1704 aa8.66□□□□□ -1.02
VPS50-218ENST00000485994 UBE2Q2LH0YL09 131 aa8.66□□□□□ -1.02
VPS50-218ENST00000485994 USP2O75604 605 aaPredicted RBP8.66□□□□□ -1.02
VPS50-218ENST00000485994 TNNI2P48788 182 aa8.66□□□□□ -1.02
VPS50-218ENST00000485994 RBM5P52756 815 aaKnown RBP eCLIP8.66□□□□□ -1.02
VPS50-218ENST00000485994 KIF23Q02241 960 aaPredicted RBP8.66□□□□□ -1.02
VPS50-218ENST00000485994 TFCP2Q12800 502 aa8.66□□□□□ -1.02
VPS50-218ENST00000485994 RASA3Q14644 834 aa8.66□□□□□ -1.02
VPS50-218ENST00000485994 MVPQ14764 893 aaKnown RBP8.66□□□□□ -1.02
VPS50-218ENST00000485994 GRIK5Q16478 980 aa8.66□□□□□ -1.02
VPS50-218ENST00000485994 ZGPATQ8N5A5 531 aaKnown RBP8.66□□□□□ -1.02
VPS50-218ENST00000485994 TEPSINQ96N21 525 aa8.66□□□□□ -1.02
VPS50-218ENST00000485994 ZIC5Q96T25 663 aa8.66□□□□□ -1.02
VPS50-218ENST00000485994 CHMP4BQ9H444 224 aaKnown RBP8.66□□□□□ -1.02
VPS50-218ENST00000485994 TDRD3Q9H7E2 651 aaKnown RBP8.66□□□□□ -1.02
VPS50-218ENST00000485994 IQSEC3Q9UPP2 1182 aaPredicted RBP8.66□□□□□ -1.02
VPS50-218ENST00000485994 JAG2Q9Y219 1238 aa8.66□□□□□ -1.02
VPS50-218ENST00000485994 A0A1B0GUL7 405 aa8.65□□□□□ -1.02
VPS50-218ENST00000485994 MAP4K4O95819 1239 aaPredicted RBP8.65□□□□□ -1.02
VPS50-218ENST00000485994 LDHBP07195 334 aaKnown RBP8.65□□□□□ -1.02
VPS50-218ENST00000485994 PHKA1P46020 1223 aa8.65□□□□□ -1.02
VPS50-218ENST00000485994 LBX1P52954 281 aa8.65□□□□□ -1.02
VPS50-218ENST00000485994 CHAF1AQ13111 956 aaPredicted RBP8.65□□□□□ -1.02
VPS50-218ENST00000485994 NOM1Q5C9Z4 860 aaKnown RBP8.65□□□□□ -1.02
VPS50-218ENST00000485994 SPTY2D1Q68D10 685 aaPredicted RBP8.65□□□□□ -1.02
VPS50-218ENST00000485994 RASAL3Q86YV0 1011 aa8.65□□□□□ -1.02
VPS50-218ENST00000485994 KHSRPQ92945 711 aaKnown RBP eCLIP8.65□□□□□ -1.022e-7■■■■□ 23.4
VPS50-218ENST00000485994 HOOK2Q96ED9 719 aa8.65□□□□□ -1.02
VPS50-218ENST00000485994 XAGE2Q96GT9 111 aa8.65□□□□□ -1.02
VPS50-218ENST00000485994 ZNF512BQ96KM6 892 aaPredicted RBP8.65□□□□□ -1.02
VPS50-218ENST00000485994 CFHR5Q9BXR6 569 aa8.65□□□□□ -1.02
VPS50-218ENST00000485994 SCAF8Q9UPN6 1271 aaKnown RBP8.65□□□□□ -1.02
VPS50-218ENST00000485994 CASP8AP2Q9UKL3 1982 aa8.64□□□□□ -1.03
VPS50-218ENST00000485994 AOX1Q06278 1338 aa8.64□□□□□ -1.03
VPS50-218ENST00000485994 CLRN2A0PK11 232 aa8.64□□□□□ -1.03
VPS50-218ENST00000485994 ZBTB48P10074 688 aaPredicted RBP8.64□□□□□ -1.03
VPS50-218ENST00000485994 ARID4AP29374 1257 aaPredicted RBP8.64□□□□□ -1.03
VPS50-218ENST00000485994 IREB2P48200 963 aaKnown RBP8.64□□□□□ -1.03
VPS50-218ENST00000485994 GRM1Q13255 1194 aa8.64□□□□□ -1.03
VPS50-218ENST00000485994 PDE3AQ14432 1141 aa8.64□□□□□ -1.03
VPS50-218ENST00000485994 NBPF12Q5TAG4 269 aaPredicted RBP8.64□□□□□ -1.03
VPS50-218ENST00000485994 MOB2Q70IA6 237 aa8.64□□□□□ -1.03
VPS50-218ENST00000485994 ITPRIPQ8IWB1 547 aa8.64□□□□□ -1.03
VPS50-218ENST00000485994 SLF2Q8IX21 1173 aa8.64□□□□□ -1.03
VPS50-218ENST00000485994 RPAP2Q8IXW5 612 aaPredicted RBP8.64□□□□□ -1.03
VPS50-218ENST00000485994 ANKRD13AQ8IZ07 590 aa8.64□□□□□ -1.03
VPS50-218ENST00000485994 TNS4Q8IZW8 715 aa8.64□□□□□ -1.03
VPS50-218ENST00000485994 SLC10A4Q96EP9 437 aa8.64□□□□□ -1.03
VPS50-218ENST00000485994 VEZTQ9HBM0 779 aa8.64□□□□□ -1.03
VPS50-218ENST00000485994 RCAN3Q9UKA8 241 aa8.64□□□□□ -1.03
VPS50-218ENST00000485994 DDX19BQ9UMR2 479 aa8.64□□□□□ -1.03
VPS50-218ENST00000485994 ANGEL1Q9UNK9 670 aaKnown RBP8.64□□□□□ -1.03
VPS50-218ENST00000485994 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.64□□□□□ -1.03
VPS50-218ENST00000485994 MYH2Q9UKX2 1941 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms