RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 PAXBP1Q9Y5B6 917 aa11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 BRAPQ7Z569 592 aa11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 GSDMBQ8TAX9 411 aa11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 TRAF5O00463 557 aa11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 ALDH1B1P30837 517 aa11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 HSPA4P34932 840 aa11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 DLGAP5Q15398 846 aa11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 SEL1L2Q5TEA6 688 aa11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 PEG3Q9GZU2 1588 aa11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 RTL1A6NKG5 1358 aa11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 RIMS2Q9UQ26 1411 aa11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 DYNC1I1O14576 645 aa11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 RIOK3O14730 519 aaKnown RBP11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 ARHGEF6Q15052 776 aa11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 DHX32Q7L7V1 743 aaKnown RBP11.87□□□□□ -0.51
SRGAP3-207ENST00000485983 NUCB1Q02818 461 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 CWF19L2Q2TBE0 894 aaKnown RBP11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 LIN9Q5TKA1 542 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 PLIN2Q99541 437 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 TRIM7Q9C029 511 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 KAT6BQ8WYB5 2073 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 TERF1P54274 439 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 GABPAQ06546 454 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 PUM3Q15397 648 aaKnown RBP11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 NSMFQ6X4W1 530 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 NOC2LQ9Y3T9 749 aaKnown RBP11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 CTAGE9A4FU28 777 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 GIPC1O14908 333 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 ANO6Q4KMQ2 910 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 CPXCR1Q8N123 301 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 MAP3K5Q99683 1374 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 RNMTO43148 476 aaKnown RBP11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 PDE8AO60658 829 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 ATP2C2O75185 946 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 ERCC5P28715 1186 aaPredicted RBP11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 KRT9P35527 623 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 HDAC1Q13547 482 aaPredicted RBP11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 CCDC129Q6ZRS4 1044 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 CHST3Q7LGC8 479 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 AOPEPQ8N6M6 819 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 TBC1D31Q96DN5 1066 aa11.86□□□□□ -0.51
SRGAP3-207ENST00000485983 HCLS1P14317 486 aaPredicted RBP11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 SLC1A4P43007 532 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 APOBRQ0VD83 1088 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 CCDC110Q8TBZ0 833 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 LUC7L2Q9Y383 392 aaKnown RBP11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 TNFAIP3P21580 790 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 ITGA6P23229 1130 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 TNFAIP1Q13829 316 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 VWA3BQ502W6 1294 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 KCNG1Q9UIX4 513 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 NR1I2O75469 434 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 STX17P56962 302 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 ANKS4BQ8N8V4 417 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 FAM89AQ96GI7 184 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 SKILP12757 684 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 FAM98CQ17RN3 349 aaKnown RBP11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 PPP1R21Q6ZMI0 780 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 CEP128Q6ZU80 1094 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 CCDC25Q86WR0 208 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 GPR161Q8N6U8 529 aaKnown RBP11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 IP6K1Q92551 441 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 DDX21Q9NR30 783 aaKnown RBP eCLIP11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 DACT1Q9NYF0 836 aa11.85□□□□□ -0.51
SRGAP3-207ENST00000485983 SYT1P21579 422 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 C8orf58Q8NAV2 365 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 SELENOSQ9BQE4 189 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 ZKSCAN3Q9BRR0 538 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 AS3MTQ9HBK9 375 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 HELLSQ9NRZ9 838 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 CALCOCO1Q9P1Z2 691 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 KDM5BQ9UGL1 1544 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 SPOPO43791 374 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 CALUO43852 315 aaPredicted RBP11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 FAM47CQ5HY64 1035 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 RIOK1Q9BRS2 568 aaKnown RBP11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 DNAI1Q9UI46 699 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 USP21Q9UK80 565 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 BCS1LQ9Y276 419 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 TNNC1P63316 161 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 DAAM2Q86T65 1068 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 PLBD2Q8NHP8 589 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 FAM200AQ8TCP9 573 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 ATRIPQ8WXE1 791 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 CNPY2Q9Y2B0 182 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 PPIP5K2O43314 1243 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 CLUL1Q15846 466 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 MRPL50Q8N5N7 158 aaKnown RBP11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 FLAD1Q8NFF5 587 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 ARFGAP3Q9NP61 516 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 CUL7Q14999 1698 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 RAD50Q92878 1312 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 VWA3AA6NCI4 1184 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 TUBB4AP04350 444 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 PABPC4Q13310 644 aaKnown RBP eCLIP11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 TBC1D22AQ8WUA7 517 aa11.84□□□□□ -0.51
SRGAP3-207ENST00000485983 EYA2O00167 538 aa11.83□□□□□ -0.52
SRGAP3-207ENST00000485983 ZNF174Q15697 407 aa11.83□□□□□ -0.52
SRGAP3-207ENST00000485983 PPP1R9BQ96SB3 815 aa11.83□□□□□ -0.52
SRGAP3-207ENST00000485983 RALGAPBQ86X10 1494 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms