RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	KIF22	Q14807	665 aa		13.28	□□□□□ -0.28
HMGN1-215	ENST00000485550	METTL24	Q5JXM2	366 aa		13.28	□□□□□ -0.28
HMGN1-215	ENST00000485550	TDRD7	Q8NHU6	1098 aa	Known RBP	13.28	□□□□□ -0.28
HMGN1-215	ENST00000485550	TDRD3	Q9H7E2	651 aa	Known RBP	13.28	□□□□□ -0.28
HMGN1-215	ENST00000485550	ZNF70	Q9UC06	446 aa	Predicted RBP	13.28	□□□□□ -0.28
HMGN1-215	ENST00000485550	PTPRC	P08575	1304 aa		13.28	□□□□□ -0.28
HMGN1-215	ENST00000485550	TCP10L2	B9ZVM9	353 aa		13.27	□□□□□ -0.29
HMGN1-215	ENST00000485550	FKBP1A	P62942	108 aa	Known RBP	13.27	□□□□□ -0.29
HMGN1-215	ENST00000485550	MAP3K9	P80192	1104 aa		13.27	□□□□□ -0.29
HMGN1-215	ENST00000485550	LACTB	P83111	547 aa	Predicted RBP	13.27	□□□□□ -0.29
HMGN1-215	ENST00000485550	CHAF1A	Q13111	956 aa	Predicted RBP	13.27	□□□□□ -0.29
HMGN1-215	ENST00000485550	TNFAIP1	Q13829	316 aa		13.27	□□□□□ -0.29
HMGN1-215	ENST00000485550	RABL6	Q3YEC7	729 aa	Predicted RBP	13.27	□□□□□ -0.29
HMGN1-215	ENST00000485550	MFSD14B	Q5SR56	506 aa		13.27	□□□□□ -0.29
HMGN1-215	ENST00000485550	TEPSIN	Q96N21	525 aa		13.27	□□□□□ -0.29
HMGN1-215	ENST00000485550	TMEM39B	Q9GZU3	492 aa		13.27	□□□□□ -0.29
HMGN1-215	ENST00000485550	USP44	Q9H0E7	712 aa		13.27	□□□□□ -0.29
HMGN1-215	ENST00000485550	SMC4	Q9NTJ3	1288 aa		13.27	□□□□□ -0.29
HMGN1-215	ENST00000485550	TTF2	Q9UNY4	1162 aa	Known RBP	13.27	□□□□□ -0.29
HMGN1-215	ENST00000485550	TLR2	O60603	784 aa		13.26	□□□□□ -0.29
HMGN1-215	ENST00000485550	LHX8	Q68G74	356 aa		13.26	□□□□□ -0.29
HMGN1-215	ENST00000485550	FAM205A	Q6ZU69	1335 aa		13.26	□□□□□ -0.29
HMGN1-215	ENST00000485550	MROH5	Q6ZUA9	1318 aa		13.26	□□□□□ -0.29
HMGN1-215	ENST00000485550	VPS37D	Q86XT2	251 aa		13.26	□□□□□ -0.29
HMGN1-215	ENST00000485550	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.26	□□□□□ -0.29
HMGN1-215	ENST00000485550	CSAD	Q9Y600	493 aa		13.26	□□□□□ -0.29
HMGN1-215	ENST00000485550	BTBD19	C9JJ37	291 aa		13.25	□□□□□ -0.29
HMGN1-215	ENST00000485550	FRAT2	O75474	233 aa	Predicted RBP	13.25	□□□□□ -0.29
HMGN1-215	ENST00000485550	WDHD1	O75717	1129 aa	Predicted RBP	13.25	□□□□□ -0.29
HMGN1-215	ENST00000485550	CTGF	P29279	349 aa		13.25	□□□□□ -0.29
HMGN1-215	ENST00000485550	BCAM	P50895	628 aa		13.25	□□□□□ -0.29
HMGN1-215	ENST00000485550	GRIK5	Q16478	980 aa		13.25	□□□□□ -0.29
HMGN1-215	ENST00000485550	FBXO33	Q7Z6M2	555 aa		13.25	□□□□□ -0.29
HMGN1-215	ENST00000485550	ZNF579	Q8NAF0	562 aa	Known RBP	13.25	□□□□□ -0.29
HMGN1-215	ENST00000485550	NOB1	Q9ULX3	412 aa	Known RBP	13.25	□□□□□ -0.29
HMGN1-215	ENST00000485550	MYH13	Q9UKX3	1938 aa		13.24	□□□□□ -0.29
HMGN1-215	ENST00000485550	PDE8B	O95263	885 aa		13.24	□□□□□ -0.29
HMGN1-215	ENST00000485550	ALDH1L2	Q3SY69	923 aa		13.24	□□□□□ -0.29
HMGN1-215	ENST00000485550	CAVIN4	Q5BKX8	364 aa		13.24	□□□□□ -0.29
HMGN1-215	ENST00000485550	DZIP1L	Q8IYY4	767 aa	Known RBP	13.24	□□□□□ -0.29
HMGN1-215	ENST00000485550	PRO3102	Q9H379	93 aa		13.24	□□□□□ -0.29
HMGN1-215	ENST00000485550		A0A0C4DFX4	3053 aa		13.24	□□□□□ -0.29
HMGN1-215	ENST00000485550	SPDYE5	A6NIY4	337 aa		13.23	□□□□□ -0.29
HMGN1-215	ENST00000485550	SOX1	O00570	391 aa	Predicted RBP	13.23	□□□□□ -0.29
HMGN1-215	ENST00000485550	IRF6	O14896	467 aa		13.23	□□□□□ -0.29
HMGN1-215	ENST00000485550	GNRH1	P01148	92 aa		13.23	□□□□□ -0.29
HMGN1-215	ENST00000485550	CETP	P11597	493 aa		13.23	□□□□□ -0.29
HMGN1-215	ENST00000485550	CRK	P46108	304 aa		13.23	□□□□□ -0.29
HMGN1-215	ENST00000485550	TRMT2A	Q8IZ69	625 aa	Known RBP	13.23	□□□□□ -0.29
HMGN1-215	ENST00000485550	VGLL2	Q8N8G2	317 aa		13.23	□□□□□ -0.29
HMGN1-215	ENST00000485550	LRCH3	Q96II8	777 aa		13.23	□□□□□ -0.29
HMGN1-215	ENST00000485550	HTATIP2	Q9BUP3	242 aa		13.23	□□□□□ -0.29
HMGN1-215	ENST00000485550	CPA4	Q9UI42	421 aa		13.23	□□□□□ -0.29
HMGN1-215	ENST00000485550	SNCAIP	Q9Y6H5	919 aa		13.23	□□□□□ -0.29
HMGN1-215	ENST00000485550	CCL5	P13501	91 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	OSBP	P22059	807 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	GRK4	P32298	578 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	PSMC4	P43686	418 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	GJA8	P48165	433 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	RFX5	P48382	616 aa	Predicted RBP	13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	TNNI2	P48788	182 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	CACNB3	P54284	484 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	PRMT2	P55345	433 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	UBE2Q1	Q7Z7E8	422 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	NKX2-3	Q8TAU0	364 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	RAET1E	Q8TD07	263 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	TRIM47	Q96LD4	638 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	RNF208	Q9H0X6	261 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	BIN2	Q9UBW5	565 aa	Predicted RBP	13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	SRRD	Q9UH36	339 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	SERPINA10	Q9UK55	444 aa		13.22	□□□□□ -0.29
HMGN1-215	ENST00000485550	EYA2	O00167	538 aa		13.21	□□□□□ -0.29
HMGN1-215	ENST00000485550	ZBTB7B	O15156	539 aa	Predicted RBP	13.21	□□□□□ -0.29
HMGN1-215	ENST00000485550	IFIT1	P09914	478 aa	Known RBP	13.21	□□□□□ -0.29
HMGN1-215	ENST00000485550	UBTFL1	P0CB47	393 aa	Predicted RBP	13.21	□□□□□ -0.29
HMGN1-215	ENST00000485550	CLCN6	P51797	869 aa		13.21	□□□□□ -0.29
HMGN1-215	ENST00000485550	SNAPC2	Q13487	334 aa		13.21	□□□□□ -0.29
HMGN1-215	ENST00000485550	C17orf99	Q6UX52	265 aa		13.21	□□□□□ -0.29
HMGN1-215	ENST00000485550	ERO1B	Q86YB8	467 aa		13.21	□□□□□ -0.29
HMGN1-215	ENST00000485550	WRNIP1	Q96S55	665 aa		13.21	□□□□□ -0.29
HMGN1-215	ENST00000485550	SIL1	Q9H173	461 aa		13.21	□□□□□ -0.29
HMGN1-215	ENST00000485550	ZCCHC17	Q9NP64	241 aa	Known RBP	13.21	□□□□□ -0.29
HMGN1-215	ENST00000485550	NR2E3	Q9Y5X4	410 aa		13.21	□□□□□ -0.29
HMGN1-215	ENST00000485550	LAMA3	Q16787	3333 aa		13.2	□□□□□ -0.3
HMGN1-215	ENST00000485550	MYPN	Q86TC9	1320 aa		13.2	□□□□□ -0.3
HMGN1-215	ENST00000485550	FARP2	O94887	1054 aa	Predicted RBP	13.2	□□□□□ -0.3
HMGN1-215	ENST00000485550	FMNL1	O95466	1100 aa	Predicted RBP	13.2	□□□□□ -0.3
HMGN1-215	ENST00000485550	GJB1	P08034	283 aa		13.2	□□□□□ -0.3
HMGN1-215	ENST00000485550	FGFR2	P21802	821 aa		13.2	□□□□□ -0.3
HMGN1-215	ENST00000485550	PUM3	Q15397	648 aa	Known RBP	13.2	□□□□□ -0.3
HMGN1-215	ENST00000485550	PTPRF	P10586	1907 aa		13.19	□□□□□ -0.3
HMGN1-215	ENST00000485550	CCER2	I3L3R5	266 aa		13.19	□□□□□ -0.3
HMGN1-215	ENST00000485550	HOXD10	P28358	340 aa		13.19	□□□□□ -0.3
HMGN1-215	ENST00000485550	MNX1	P50219	401 aa	Predicted RBP	13.19	□□□□□ -0.3
HMGN1-215	ENST00000485550	PPIL2	Q13356	520 aa		13.19	□□□□□ -0.3
HMGN1-215	ENST00000485550	ATG9A	Q7Z3C6	839 aa		13.19	□□□□□ -0.3
HMGN1-215	ENST00000485550	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.19	□□□□□ -0.3
HMGN1-215	ENST00000485550	TBC1D22A	Q8WUA7	517 aa		13.19	□□□□□ -0.3
HMGN1-215	ENST00000485550	PA2G4	Q9UQ80	394 aa	Known RBP	13.19	□□□□□ -0.3

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