RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 SOX17Q9H6I2 414 aaPredicted RBP6.35□□□□□ -1.39
PTCD3-214ENST00000483925 CCSER2Q9H7U1 834 aa6.35□□□□□ -1.39
PTCD3-214ENST00000483925 LEMD3Q9Y2U8 911 aa6.35□□□□□ -1.39
PTCD3-214ENST00000483925 LOC100289279A0A1B0GTE1 492 aa6.34□□□□□ -1.39
PTCD3-214ENST00000483925 EIF4EBP3O60516 100 aaPredicted RBP6.34□□□□□ -1.39
PTCD3-214ENST00000483925 TIAF1O95411 115 aa6.34□□□□□ -1.39
PTCD3-214ENST00000483925 GTF2F1P35269 517 aaKnown RBP eCLIP6.34□□□□□ -1.39
PTCD3-214ENST00000483925 USP5P45974 858 aa6.34□□□□□ -1.39
PTCD3-214ENST00000483925 USP11P51784 963 aa6.34□□□□□ -1.39
PTCD3-214ENST00000483925 EHHADHQ08426 723 aa6.34□□□□□ -1.39
PTCD3-214ENST00000483925 CPSF6Q16630 551 aaKnown RBP eCLIP6.34□□□□□ -1.39
PTCD3-214ENST00000483925 NOL8Q76FK4 1167 aaKnown RBP6.34□□□□□ -1.39
PTCD3-214ENST00000483925 FBXL6Q8N531 539 aa6.34□□□□□ -1.39
PTCD3-214ENST00000483925 ASAP3Q8TDY4 903 aa6.34□□□□□ -1.39
PTCD3-214ENST00000483925 SNX29Q8TEQ0 813 aa6.34□□□□□ -1.39
PTCD3-214ENST00000483925 CITED4Q96RK1 184 aa6.34□□□□□ -1.39
PTCD3-214ENST00000483925 TINF2Q9BSI4 451 aa6.34□□□□□ -1.39
PTCD3-214ENST00000483925 OSBPL1AQ9BXW6 950 aa6.34□□□□□ -1.39
PTCD3-214ENST00000483925 BHLHE41Q9C0J9 482 aaPredicted RBP6.34□□□□□ -1.39
PTCD3-214ENST00000483925 FAM95CA0A1B0GW59 222 aa6.33□□□□□ -1.4
PTCD3-214ENST00000483925 NDUFB5O43674 189 aa6.33□□□□□ -1.4
PTCD3-214ENST00000483925 SORBS3O60504 671 aa6.33□□□□□ -1.4
PTCD3-214ENST00000483925 F13BP05160 661 aa6.33□□□□□ -1.4
PTCD3-214ENST00000483925 P4HBP07237 508 aaKnown RBP6.33□□□□□ -1.4
PTCD3-214ENST00000483925 ESRRAP11474 423 aaPredicted RBP6.33□□□□□ -1.4
PTCD3-214ENST00000483925 FOSL1P15407 271 aa6.33□□□□□ -1.4
PTCD3-214ENST00000483925 NFKBIBQ15653 356 aa6.33□□□□□ -1.4
PTCD3-214ENST00000483925 PAOXQ6QHF9 649 aa6.33□□□□□ -1.4
PTCD3-214ENST00000483925 ZNF662Q6ZS27 426 aa6.33□□□□□ -1.4
PTCD3-214ENST00000483925 METTL16Q86W50 562 aaKnown RBP6.33□□□□□ -1.4
PTCD3-214ENST00000483925 CAPN10Q9HC96 672 aa6.33□□□□□ -1.4
PTCD3-214ENST00000483925 ADGRE2Q9UHX3 823 aa6.33□□□□□ -1.4
PTCD3-214ENST00000483925 PRPF40AO75400 957 aaKnown RBP6.32□□□□□ -1.4
PTCD3-214ENST00000483925 DLGAP3O95886 979 aa6.32□□□□□ -1.4
PTCD3-214ENST00000483925 DRD2P14416 443 aa6.32□□□□□ -1.4
PTCD3-214ENST00000483925 NPR3P17342 541 aa6.32□□□□□ -1.4
PTCD3-214ENST00000483925 GSTM4Q03013 218 aa6.32□□□□□ -1.4
PTCD3-214ENST00000483925 MTMR3Q13615 1198 aa6.32□□□□□ -1.4
PTCD3-214ENST00000483925 CCDC144BQ3MJ40 725 aa6.32□□□□□ -1.4
PTCD3-214ENST00000483925 LDLRAD1Q5T700 205 aa6.32□□□□□ -1.4
PTCD3-214ENST00000483925 TMC7Q7Z402 723 aa6.32□□□□□ -1.4
PTCD3-214ENST00000483925 FBLIM1Q8WUP2 373 aa6.32□□□□□ -1.4
PTCD3-214ENST00000483925 DHX38Q92620 1227 aaKnown RBP6.32□□□□□ -1.4
PTCD3-214ENST00000483925 PARP2Q9UGN5 583 aa6.32□□□□□ -1.4
PTCD3-214ENST00000483925 FOXD3Q9UJU5 478 aaPredicted RBP6.32□□□□□ -1.4
PTCD3-214ENST00000483925 ANGEL1Q9UNK9 670 aaKnown RBP6.32□□□□□ -1.4
PTCD3-214ENST00000483925 SBNO2Q9Y2G9 1366 aa6.31□□□□□ -1.4
PTCD3-214ENST00000483925 TREHO43280 583 aa6.31□□□□□ -1.4
PTCD3-214ENST00000483925 MARCH6O60337 910 aa6.31□□□□□ -1.4
PTCD3-214ENST00000483925 LDHBP07195 334 aaKnown RBP6.31□□□□□ -1.4
PTCD3-214ENST00000483925 PLCB3Q01970 1234 aa6.31□□□□□ -1.4
PTCD3-214ENST00000483925 FMR1Q06787 632 aaKnown RBP eCLIP6.31□□□□□ -1.4
PTCD3-214ENST00000483925 MSMPQ1L6U9 139 aa6.31□□□□□ -1.4
PTCD3-214ENST00000483925 PEAR1Q5VY43 1037 aaPredicted RBP6.31□□□□□ -1.4
PTCD3-214ENST00000483925 SDE2Q6IQ49 451 aa6.31□□□□□ -1.4
PTCD3-214ENST00000483925 CDPF1Q6NVV7 123 aa6.31□□□□□ -1.4
PTCD3-214ENST00000483925 TMC4Q7Z404 712 aa6.31□□□□□ -1.4
PTCD3-214ENST00000483925 GMLQ99445 158 aa6.31□□□□□ -1.4
PTCD3-214ENST00000483925 METTL22Q9BUU2 404 aaPredicted RBP6.31□□□□□ -1.4
PTCD3-214ENST00000483925 CLSTN1O94985 981 aa6.3□□□□□ -1.4
PTCD3-214ENST00000483925 ZNF76P36508 570 aa6.3□□□□□ -1.4
PTCD3-214ENST00000483925 SOX4Q06945 474 aaPredicted RBP6.3□□□□□ -1.4
PTCD3-214ENST00000483925 RBL2Q08999 1139 aa6.3□□□□□ -1.4
PTCD3-214ENST00000483925 CERS3Q8IU89 383 aa6.3□□□□□ -1.4
PTCD3-214ENST00000483925 ABI1Q8IZP0 508 aa6.3□□□□□ -1.4
PTCD3-214ENST00000483925 C2CD4AQ8NCU7 369 aaPredicted RBP6.3□□□□□ -1.4
PTCD3-214ENST00000483925 TMC1Q8TDI8 760 aa6.3□□□□□ -1.4
PTCD3-214ENST00000483925 YIPF2Q9BWQ6 316 aa6.3□□□□□ -1.4
PTCD3-214ENST00000483925 METTL14Q9HCE5 456 aaKnown RBP6.3□□□□□ -1.4
PTCD3-214ENST00000483925 LATS2Q9NRM7 1088 aa6.3□□□□□ -1.4
PTCD3-214ENST00000483925 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.3□□□□□ -1.4
PTCD3-214ENST00000483925 CYP26A1O43174 497 aa6.29□□□□□ -1.4
PTCD3-214ENST00000483925 IBSPP21815 317 aaPredicted RBP6.29□□□□□ -1.4
PTCD3-214ENST00000483925 IGBP1P78318 339 aa6.29□□□□□ -1.4
PTCD3-214ENST00000483925 DAB2P98082 770 aa6.29□□□□□ -1.4
PTCD3-214ENST00000483925 FANCCQ00597 558 aa6.29□□□□□ -1.4
PTCD3-214ENST00000483925 ATP2B2Q01814 1243 aa6.29□□□□□ -1.4
PTCD3-214ENST00000483925 PSMD2Q13200 908 aa6.29□□□□□ -1.4
PTCD3-214ENST00000483925 EGFLAMQ63HQ2 1017 aa6.29□□□□□ -1.4
PTCD3-214ENST00000483925 DHX37Q8IY37 1157 aaKnown RBP6.29□□□□□ -1.4
PTCD3-214ENST00000483925 SHISA5Q8N114 240 aa6.29□□□□□ -1.4
PTCD3-214ENST00000483925 EZH1Q92800 747 aaPredicted RBP6.29□□□□□ -1.4
PTCD3-214ENST00000483925 DMRTB1Q96MA1 342 aa6.29□□□□□ -1.4
PTCD3-214ENST00000483925 FBXL18Q96ME1 805 aa6.29□□□□□ -1.4
PTCD3-214ENST00000483925 TBC1D32Q96NH3 1257 aa6.29□□□□□ -1.4
PTCD3-214ENST00000483925 DUSP9Q99956 384 aaKnown RBP6.29□□□□□ -1.4
PTCD3-214ENST00000483925 ZFYVE28Q9HCC9 887 aa6.29□□□□□ -1.4
PTCD3-214ENST00000483925 VTI1BQ9UEU0 232 aa6.29□□□□□ -1.4
PTCD3-214ENST00000483925 CCDC39Q9UFE4 941 aa6.29□□□□□ -1.4
PTCD3-214ENST00000483925 METTL12A8MUP2 240 aa6.28□□□□□ -1.4
PTCD3-214ENST00000483925 FZD6O60353 706 aa6.28□□□□□ -1.4
PTCD3-214ENST00000483925 PRNPP04156 253 aa6.28□□□□□ -1.4
PTCD3-214ENST00000483925 DNAJA1P31689 397 aaKnown RBP6.28□□□□□ -1.4
PTCD3-214ENST00000483925 MAPK8P45983 427 aa6.28□□□□□ -1.4
PTCD3-214ENST00000483925 ZAR1Q86SH2 424 aa6.28□□□□□ -1.4
PTCD3-214ENST00000483925 MICAL1Q8TDZ2 1067 aa6.28□□□□□ -1.4
PTCD3-214ENST00000483925 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.28□□□□□ -1.4
PTCD3-214ENST00000483925 A0A096LPE4 126 aa6.27□□□□□ -1.41
PTCD3-214ENST00000483925 KRTAP4-8A0A0G2JLE6 195 aa6.27□□□□□ -1.41
PTCD3-214ENST00000483925 A0A1W2PPZ6 126 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms