RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 ADM5C9JUS6 153 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 MAP4K4O95819 1239 aaPredicted RBP6.49□□□□□ -1.37
COL17A1-206ENST00000483876 IFIT1P09914 478 aaKnown RBP6.49□□□□□ -1.37
COL17A1-206ENST00000483876 UQCRFS1P1P0C7P4 283 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 ZKSCAN1P17029 563 aaPredicted RBP6.49□□□□□ -1.37
COL17A1-206ENST00000483876 FGFR2P21802 821 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 BMP8BP34820 402 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 IGHMBP2P38935 993 aaKnown RBP6.49□□□□□ -1.37
COL17A1-206ENST00000483876 SREBF2Q12772 1141 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 TTF1Q15361 905 aaPredicted RBP6.49□□□□□ -1.37
COL17A1-206ENST00000483876 PUM3Q15397 648 aaKnown RBP6.49□□□□□ -1.37
COL17A1-206ENST00000483876 ATP2B3Q16720 1220 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 MCMDC2Q4G0Z9 681 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 METTL24Q5JXM2 366 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 GORABQ5T7V8 394 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 RNF20Q5VTR2 975 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 SAMD7Q7Z3H4 446 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 NIM1KQ8IY84 436 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 MAFAQ8NHW3 353 aaPredicted RBP6.49□□□□□ -1.37
COL17A1-206ENST00000483876 XAGE2Q96GT9 111 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 INTS4Q96HW7 963 aaKnown RBP6.49□□□□□ -1.37
COL17A1-206ENST00000483876 NLRP3Q96P20 1036 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 MPHOSPH8Q99549 860 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 EFCC1Q9HA90 598 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 BSDC1Q9NW68 430 aaPredicted RBP6.49□□□□□ -1.37
COL17A1-206ENST00000483876 PAG1Q9NWQ8 432 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 HMG20BQ9P0W2 317 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 ZNF609O15014 1411 aa6.49□□□□□ -1.37
COL17A1-206ENST00000483876 CENPFP49454 3210 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 TTC28Q96AY4 2481 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 RNF113AO15541 343 aaKnown RBP6.48□□□□□ -1.37
COL17A1-206ENST00000483876 EVI5O60447 810 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 TAF5LO75529 589 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 ALDH1A1P00352 501 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 PDIA4P13667 645 aaKnown RBP6.48□□□□□ -1.37
COL17A1-206ENST00000483876 HCLS1P14317 486 aaPredicted RBP6.48□□□□□ -1.37
COL17A1-206ENST00000483876 PSMA5P28066 241 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 GTF2E1P29083 439 aaPredicted RBP6.48□□□□□ -1.37
COL17A1-206ENST00000483876 ARID4AP29374 1257 aaPredicted RBP6.48□□□□□ -1.37
COL17A1-206ENST00000483876 NEK4P51957 841 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 NMIQ13287 307 aaPredicted RBP6.48□□□□□ -1.37
COL17A1-206ENST00000483876 KRT32Q14532 448 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 TTC39AQ5SRH9 613 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 ZSCAN25Q6NSZ9 544 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 TMED8Q6PL24 325 aaPredicted RBP6.48□□□□□ -1.37
COL17A1-206ENST00000483876 CD99L2Q8TCZ2 262 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 DCPSQ96C86 337 aaKnown RBP6.48□□□□□ -1.37
COL17A1-206ENST00000483876 FAM161BQ96MY7 647 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 C1QTNF1Q9BXJ1 281 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 IL25Q9H293 177 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 ZSWIM6Q9HCJ5 1215 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 SNX14Q9Y5W7 946 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 CCDC171Q6TFL3 1326 aa6.48□□□□□ -1.37
COL17A1-206ENST00000483876 MED23Q9ULK4 1368 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 H7C1D1 291 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 GOLIM4O00461 696 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 CD2BP2O95400 341 aaKnown RBP6.47□□□□□ -1.37
COL17A1-206ENST00000483876 SLC5A1P13866 664 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 RPS8P62241 208 aaKnown RBP6.47□□□□□ -1.37
COL17A1-206ENST00000483876 NUCB2P80303 420 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 PTH1RQ03431 593 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 CXCL9Q07325 125 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 MKRN3Q13064 507 aaKnown RBP6.47□□□□□ -1.37
COL17A1-206ENST00000483876 CUL4AQ13619 759 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 UBE4AQ14139 1066 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 ZMYM1Q5SVZ6 1142 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 VPS53Q5VIR6 699 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 CLEC17AQ6ZS10 378 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 NBPF5PQ86XG9 351 aaPredicted RBP6.47□□□□□ -1.37
COL17A1-206ENST00000483876 ANKRD18AQ8IVF6 992 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 SHISA4Q96DD7 197 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 ZSCAN31Q96LW9 406 aaPredicted RBP6.47□□□□□ -1.37
COL17A1-206ENST00000483876 FAM227BQ96M60 508 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 GDF15Q99988 308 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 DSCC1Q9BVC3 393 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.47□□□□□ -1.37
COL17A1-206ENST00000483876 CNOT7Q9UIV1 285 aaKnown RBP6.47□□□□□ -1.37
COL17A1-206ENST00000483876 PALD1Q9ULE6 856 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 ZBTB12Q9Y330 459 aaPredicted RBP6.47□□□□□ -1.37
COL17A1-206ENST00000483876 U3KPZ7 1027 aaPredicted RBP6.47□□□□□ -1.37
COL17A1-206ENST00000483876 SPEF2Q9C093 1822 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 CACNA1SQ13698 1873 aa6.47□□□□□ -1.37
COL17A1-206ENST00000483876 A0A0D9SFI3 127 aa6.46□□□□□ -1.38
COL17A1-206ENST00000483876 POTEB2H3BUK9 544 aa6.46□□□□□ -1.38
COL17A1-206ENST00000483876 HSP90AA1P07900 732 aaKnown RBP6.46□□□□□ -1.38
COL17A1-206ENST00000483876 HMGB1P09429 215 aaKnown RBP6.46□□□□□ -1.38
COL17A1-206ENST00000483876 ALDH1B1P30837 517 aa6.46□□□□□ -1.38
COL17A1-206ENST00000483876 MRE11P49959 708 aa6.46□□□□□ -1.38
COL17A1-206ENST00000483876 FKBP1BP68106 108 aa6.46□□□□□ -1.38
COL17A1-206ENST00000483876 UBE3CQ15386 1083 aa6.46□□□□□ -1.38
COL17A1-206ENST00000483876 NFKBIBQ15653 356 aa6.46□□□□□ -1.38
COL17A1-206ENST00000483876 RIC1Q4ADV7 1423 aa6.46□□□□□ -1.38
COL17A1-206ENST00000483876 CREB3L3Q68CJ9 461 aa6.46□□□□□ -1.38
COL17A1-206ENST00000483876 CCDC102BQ68D86 513 aa6.46□□□□□ -1.38
COL17A1-206ENST00000483876 FAM109BQ6ICB4 259 aaPredicted RBP6.46□□□□□ -1.38
COL17A1-206ENST00000483876 RASEFQ8IZ41 740 aa6.46□□□□□ -1.38
COL17A1-206ENST00000483876 TDHQ8IZJ6 230 aa6.46□□□□□ -1.38
COL17A1-206ENST00000483876 TTC14Q96N46 770 aa6.46□□□□□ -1.38
COL17A1-206ENST00000483876 CCDC85AQ96PX6 553 aaPredicted RBP6.46□□□□□ -1.38
COL17A1-206ENST00000483876 DNAJC2Q99543 621 aaKnown RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms