RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 WHAMMQ8TF30 809 aa11.62□□□□□ -0.55
MCF2-207ENST00000483690 GAL3ST3Q96A11 431 aa11.62□□□□□ -0.55
MCF2-207ENST00000483690 KLHDC7BQ96G42 594 aa11.62□□□□□ -0.55
MCF2-207ENST00000483690 LRRC3Q9BY71 257 aa11.62□□□□□ -0.55
MCF2-207ENST00000483690 ZC3H12CQ9C0D7 883 aaKnown RBP11.62□□□□□ -0.55
MCF2-207ENST00000483690 RRAGCQ9HB90 399 aa11.62□□□□□ -0.55
MCF2-207ENST00000483690 ENAMQ9NRM1 1142 aa11.62□□□□□ -0.55
MCF2-207ENST00000483690 SSBP05455 408 aaKnown RBP eCLIP11.61□□□□□ -0.55
MCF2-207ENST00000483690 MAOBP27338 520 aa11.61□□□□□ -0.55
MCF2-207ENST00000483690 SOX9P48436 509 aa11.61□□□□□ -0.55
MCF2-207ENST00000483690 DGKGP49619 791 aa11.61□□□□□ -0.55
MCF2-207ENST00000483690 HNRNPUQ00839 825 aaKnown RBP eCLIP11.61□□□□□ -0.55
MCF2-207ENST00000483690 SUZ12Q15022 739 aaKnown RBP11.61□□□□□ -0.55
MCF2-207ENST00000483690 CWF19L2Q2TBE0 894 aaKnown RBP11.61□□□□□ -0.55
MCF2-207ENST00000483690 SEZ6Q53EL9 994 aa11.61□□□□□ -0.55
MCF2-207ENST00000483690 SLITRK4Q8IW52 837 aa11.61□□□□□ -0.55
MCF2-207ENST00000483690 NEDD1Q8NHV4 660 aa11.61□□□□□ -0.55
MCF2-207ENST00000483690 FBXO27Q8NI29 283 aa11.61□□□□□ -0.55
MCF2-207ENST00000483690 ACSBG1Q96GR2 724 aa11.61□□□□□ -0.55
MCF2-207ENST00000483690 DNAJC2Q99543 621 aaKnown RBP11.61□□□□□ -0.55
MCF2-207ENST00000483690 NRSN2Q9GZP1 204 aa11.61□□□□□ -0.55
MCF2-207ENST00000483690 CILPO75339 1184 aa11.6□□□□□ -0.55
MCF2-207ENST00000483690 STK10O94804 968 aaKnown RBP11.6□□□□□ -0.55
MCF2-207ENST00000483690 COL9A3Q14050 684 aaPredicted RBP11.6□□□□□ -0.55
MCF2-207ENST00000483690 TRAPPC3LQ5T215 181 aa11.6□□□□□ -0.55
MCF2-207ENST00000483690 DCAF11Q8TEB1 546 aa11.6□□□□□ -0.55
MCF2-207ENST00000483690 USP26Q9BXU7 913 aa11.6□□□□□ -0.55
MCF2-207ENST00000483690 STRIP2Q9ULQ0 834 aa11.6□□□□□ -0.55
MCF2-207ENST00000483690 NLRP12P59046 1061 aa11.59□□□□□ -0.55
MCF2-207ENST00000483690 MPRIPQ6WCQ1 1025 aa11.59□□□□□ -0.55
MCF2-207ENST00000483690 DTWD1Q8N5C7 304 aa11.59□□□□□ -0.55
MCF2-207ENST00000483690 GALNT11Q8NCW6 608 aa11.59□□□□□ -0.55
MCF2-207ENST00000483690 KRT82Q9NSB4 513 aa11.59□□□□□ -0.55
MCF2-207ENST00000483690 LOC105371045A0A1W2PR82 267 aa11.58□□□□□ -0.56
MCF2-207ENST00000483690 ECEL1O95672 775 aa11.58□□□□□ -0.56
MCF2-207ENST00000483690 PTPN11Q06124 597 aaPredicted RBP11.58□□□□□ -0.56
MCF2-207ENST00000483690 PDE3AQ14432 1141 aa11.58□□□□□ -0.56
MCF2-207ENST00000483690 ILDR2Q71H61 639 aa11.58□□□□□ -0.56
MCF2-207ENST00000483690 SVOPQ8N4V2 548 aa11.58□□□□□ -0.56
MCF2-207ENST00000483690 GPBAR1Q8TDU6 330 aa11.58□□□□□ -0.56
MCF2-207ENST00000483690 CPLX3Q8WVH0 158 aa11.58□□□□□ -0.56
MCF2-207ENST00000483690 HIRIP3Q9BW71 556 aaPredicted RBP11.58□□□□□ -0.56
MCF2-207ENST00000483690 SHROOM4Q9ULL8 1493 aa11.57□□□□□ -0.56
MCF2-207ENST00000483690 MCM4P33991 863 aa11.57□□□□□ -0.56
MCF2-207ENST00000483690 CD68P34810 354 aaPredicted RBP11.57□□□□□ -0.56
MCF2-207ENST00000483690 RPL6Q02878 288 aaKnown RBP11.57□□□□□ -0.56
MCF2-207ENST00000483690 HP1BP3Q5SSJ5 553 aaPredicted RBP11.57□□□□□ -0.56
MCF2-207ENST00000483690 ZNF385CQ66K41 422 aaPredicted RBP11.57□□□□□ -0.56
MCF2-207ENST00000483690 REC114Q7Z4M0 266 aa11.57□□□□□ -0.56
MCF2-207ENST00000483690 CCDC86Q9H6F5 360 aaKnown RBP11.57□□□□□ -0.56
MCF2-207ENST00000483690 CACNA2D2Q9NY47 1150 aa11.57□□□□□ -0.56
MCF2-207ENST00000483690 PCDHA4Q9UN74 947 aa11.57□□□□□ -0.56
MCF2-207ENST00000483690 ZNF165P49910 485 aa11.56□□□□□ -0.56
MCF2-207ENST00000483690 TREML4Q6UXN2 200 aa11.56□□□□□ -0.56
MCF2-207ENST00000483690 TM4SF5O14894 197 aa11.55□□□□□ -0.56
MCF2-207ENST00000483690 DEAF1O75398 565 aaPredicted RBP11.55□□□□□ -0.56
MCF2-207ENST00000483690 HOXB4P17483 251 aaPredicted RBP11.55□□□□□ -0.56
MCF2-207ENST00000483690 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.55□□□□□ -0.56
MCF2-207ENST00000483690 BRMS1Q9HCU9 246 aa11.55□□□□□ -0.56
MCF2-207ENST00000483690 LOC100289279A0A1B0GTE1 492 aa11.54□□□□□ -0.56
MCF2-207ENST00000483690 DDX3YO15523 660 aaKnown RBP11.54□□□□□ -0.56
MCF2-207ENST00000483690 CTSBP07858 339 aa11.54□□□□□ -0.56
MCF2-207ENST00000483690 RAC1P63000 192 aa11.54□□□□□ -0.56
MCF2-207ENST00000483690 RBL2Q08999 1139 aa11.54□□□□□ -0.56
MCF2-207ENST00000483690 SOGA3Q5TF21 947 aa11.54□□□□□ -0.56
MCF2-207ENST00000483690 SRRTQ9BXP5 876 aaKnown RBP11.54□□□□□ -0.56
MCF2-207ENST00000483690 ADAM11O75078 769 aa11.53□□□□□ -0.56
MCF2-207ENST00000483690 FOXD4L6Q3SYB3 417 aaPredicted RBP11.53□□□□□ -0.56
MCF2-207ENST00000483690 FOXD4L3Q6VB84 417 aaPredicted RBP11.53□□□□□ -0.56
MCF2-207ENST00000483690 REXO1Q8N1G1 1221 aaKnown RBP11.53□□□□□ -0.56
MCF2-207ENST00000483690 FERD3LQ96RJ6 166 aa11.53□□□□□ -0.56
MCF2-207ENST00000483690 PPT2Q9UMR5 302 aa11.53□□□□□ -0.56
MCF2-207ENST00000483690 A0A0A0MRY4 1105 aa11.52□□□□□ -0.57
MCF2-207ENST00000483690 ZNF862O60290 1169 aa11.52□□□□□ -0.57
MCF2-207ENST00000483690 WIPI1Q5MNZ9 446 aaPredicted RBP11.52□□□□□ -0.57
MCF2-207ENST00000483690 CCDC81Q6ZN84 652 aa11.52□□□□□ -0.57
MCF2-207ENST00000483690 DPH6Q7L8W6 267 aa11.52□□□□□ -0.57
MCF2-207ENST00000483690 FBXO11Q86XK2 927 aa11.52□□□□□ -0.57
MCF2-207ENST00000483690 CKAP2LQ8IYA6 745 aa11.52□□□□□ -0.57
MCF2-207ENST00000483690 PMFBP1Q8TBY8 1022 aa11.52□□□□□ -0.57
MCF2-207ENST00000483690 ZNF408Q9H9D4 720 aa11.52□□□□□ -0.57
MCF2-207ENST00000483690 MRVI1Q9Y6F6 885 aa11.52□□□□□ -0.57
MCF2-207ENST00000483690 SPDYE3A6NKU9 549 aa11.51□□□□□ -0.57
MCF2-207ENST00000483690 PIK3R2O00459 728 aa11.51□□□□□ -0.57
MCF2-207ENST00000483690 LIG1P18858 919 aa11.51□□□□□ -0.57
MCF2-207ENST00000483690 LCE2AQ5TA79 106 aaPredicted RBP11.51□□□□□ -0.57
MCF2-207ENST00000483690 FBXW10Q5XX13 1052 aa11.51□□□□□ -0.57
MCF2-207ENST00000483690 GK5Q6ZS86 529 aa11.51□□□□□ -0.57
MCF2-207ENST00000483690 HDXQ7Z353 690 aa11.51□□□□□ -0.57
MCF2-207ENST00000483690 FMR1NBQ8N0W7 255 aaPredicted RBP11.51□□□□□ -0.57
MCF2-207ENST00000483690 ANAPC16Q96DE5 110 aa11.51□□□□□ -0.57
MCF2-207ENST00000483690 TRIM11Q96F44 468 aa11.51□□□□□ -0.57
MCF2-207ENST00000483690 KCNK4Q9NYG8 393 aa11.51□□□□□ -0.57
MCF2-207ENST00000483690 DUOXA2Q1HG44 320 aa11.5□□□□□ -0.57
MCF2-207ENST00000483690 KIF4BQ2VIQ3 1234 aa11.5□□□□□ -0.57
MCF2-207ENST00000483690 ELMO3Q96BJ8 720 aa11.5□□□□□ -0.57
MCF2-207ENST00000483690 PLPPR2Q96GM1 343 aa11.5□□□□□ -0.57
MCF2-207ENST00000483690 CRBNQ96SW2 442 aa11.5□□□□□ -0.57
MCF2-207ENST00000483690 LNPKQ9C0E8 428 aa11.5□□□□□ -0.57
MCF2-207ENST00000483690 SNCAIPQ9Y6H5 919 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms