RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 MYCP01106 439 aaPredicted RBP9.11□□□□□ -0.95
CCDC88A-213ENST00000476903 GATA4P43694 442 aa9.11□□□□□ -0.95
CCDC88A-213ENST00000476903 TNP2Q05952 138 aa9.11□□□□□ -0.95
CCDC88A-213ENST00000476903 AMIGO3Q86WK7 504 aa9.11□□□□□ -0.95
CCDC88A-213ENST00000476903 PHTF2Q8N3S3 785 aa9.11□□□□□ -0.95
CCDC88A-213ENST00000476903 SLC52A2Q9HAB3 445 aa9.11□□□□□ -0.95
CCDC88A-213ENST00000476903 ZNF330Q9Y3S2 320 aaPredicted RBP9.11□□□□□ -0.95
CCDC88A-213ENST00000476903 C4AP0C0L4 1744 aa9.11□□□□□ -0.95
CCDC88A-213ENST00000476903 CNTNAP4Q9C0A0 1308 aa9.1□□□□□ -0.95
CCDC88A-213ENST00000476903 GOLGB1Q14789 3259 aaKnown RBP9.1□□□□□ -0.95
CCDC88A-213ENST00000476903 RNMTO43148 476 aaKnown RBP9.1□□□□□ -0.95
CCDC88A-213ENST00000476903 MTHFSDQ2M296 383 aaKnown RBP9.1□□□□□ -0.95
CCDC88A-213ENST00000476903 FIGNL1Q6PIW4 674 aa9.1□□□□□ -0.95
CCDC88A-213ENST00000476903 NLRP8Q86W28 1048 aa9.1□□□□□ -0.95
CCDC88A-213ENST00000476903 PCMTD1Q96MG8 357 aaPredicted RBP9.1□□□□□ -0.95
CCDC88A-213ENST00000476903 SLC4A9Q96Q91 983 aa9.1□□□□□ -0.95
CCDC88A-213ENST00000476903 PLVAPQ9BX97 442 aa9.1□□□□□ -0.95
CCDC88A-213ENST00000476903 AVENQ9NQS1 362 aaPredicted RBP9.1□□□□□ -0.95
CCDC88A-213ENST00000476903 RTCBQ9Y3I0 505 aaKnown RBP9.1□□□□□ -0.95
CCDC88A-213ENST00000476903 UTRNP46939 3433 aa9.09□□□□□ -0.95
CCDC88A-213ENST00000476903 SIPA1L3O60292 1781 aaPredicted RBP9.09□□□□□ -0.95
CCDC88A-213ENST00000476903 UBR2Q8IWV8 1755 aa9.09□□□□□ -0.95
CCDC88A-213ENST00000476903 PTCD1O75127 700 aaKnown RBP9.09□□□□□ -0.95
CCDC88A-213ENST00000476903 MAPTP10636 758 aaKnown RBP9.09□□□□□ -0.95
CCDC88A-213ENST00000476903 ADH6P28332 368 aa9.09□□□□□ -0.95
CCDC88A-213ENST00000476903 GTF2E1P29083 439 aaPredicted RBP9.09□□□□□ -0.95
CCDC88A-213ENST00000476903 GPR162Q16538 588 aa9.09□□□□□ -0.95
CCDC88A-213ENST00000476903 TRAPPC3LQ5T215 181 aa9.09□□□□□ -0.95
CCDC88A-213ENST00000476903 SMIM5Q71RC9 77 aa9.09□□□□□ -0.95
CCDC88A-213ENST00000476903 ZNF295-AS1Q8N0V1 137 aa9.09□□□□□ -0.95
CCDC88A-213ENST00000476903 GAS2L2Q8NHY3 880 aa9.09□□□□□ -0.95
CCDC88A-213ENST00000476903 LGR6Q9HBX8 967 aa9.09□□□□□ -0.95
CCDC88A-213ENST00000476903 NUDCQ9Y266 331 aa9.09□□□□□ -0.95
CCDC88A-213ENST00000476903 KIF13BQ9NQT8 1826 aa9.08□□□□□ -0.96
CCDC88A-213ENST00000476903 ATXN7O15265 892 aaPredicted RBP9.08□□□□□ -0.96
CCDC88A-213ENST00000476903 RPS6KA4O75676 772 aa9.08□□□□□ -0.96
CCDC88A-213ENST00000476903 PPP2R1AP30153 589 aa9.08□□□□□ -0.96
CCDC88A-213ENST00000476903 PLA2G4AP47712 749 aa9.08□□□□□ -0.96
CCDC88A-213ENST00000476903 MTMR14Q8NCE2 650 aa9.08□□□□□ -0.96
CCDC88A-213ENST00000476903 NLGN2Q8NFZ4 835 aa9.08□□□□□ -0.96
CCDC88A-213ENST00000476903 MDFIQ99750 246 aa9.08□□□□□ -0.96
CCDC88A-213ENST00000476903 CD2APQ9Y5K6 639 aa9.08□□□□□ -0.96
CCDC88A-213ENST00000476903 KCPQ6ZWJ8 1503 aa9.07□□□□□ -0.96
CCDC88A-213ENST00000476903 GNAT3A8MTJ3 354 aa9.07□□□□□ -0.96
CCDC88A-213ENST00000476903 SPATA31C1P0DKV0 1188 aa9.07□□□□□ -0.96
CCDC88A-213ENST00000476903 CD33P20138 364 aa9.07□□□□□ -0.96
CCDC88A-213ENST00000476903 RFC4P35249 363 aa9.07□□□□□ -0.96
CCDC88A-213ENST00000476903 CRKLP46109 303 aaKnown RBP9.07□□□□□ -0.96
CCDC88A-213ENST00000476903 SCNN1DP51172 638 aa9.07□□□□□ -0.96
CCDC88A-213ENST00000476903 TLR1Q15399 786 aa9.07□□□□□ -0.96
CCDC88A-213ENST00000476903 TBC1D9Q6ZT07 1266 aa9.07□□□□□ -0.96
CCDC88A-213ENST00000476903 C1orf216Q8TAB5 229 aa9.07□□□□□ -0.96
CCDC88A-213ENST00000476903 U2AF1L5P0DN76 240 aaPredicted RBP9.06□□□□□ -0.96
CCDC88A-213ENST00000476903 PRKAR2BP31323 418 aa9.06□□□□□ -0.96
CCDC88A-213ENST00000476903 U2AF1Q01081 240 aaKnown RBP eCLIP9.06□□□□□ -0.96
CCDC88A-213ENST00000476903 SLC39A6Q13433 755 aa9.06□□□□□ -0.96
CCDC88A-213ENST00000476903 LCE3BQ5TA77 95 aa9.06□□□□□ -0.96
CCDC88A-213ENST00000476903 NLGN1Q8N2Q7 840 aa9.06□□□□□ -0.96
CCDC88A-213ENST00000476903 TPSG1Q9NRR2 321 aa9.06□□□□□ -0.96
CCDC88A-213ENST00000476903 DCDC2BA2VCK2 349 aa9.05□□□□□ -0.96
CCDC88A-213ENST00000476903 MMP10P09238 476 aa9.05□□□□□ -0.96
CCDC88A-213ENST00000476903 TEFQ10587 303 aa9.05□□□□□ -0.96
CCDC88A-213ENST00000476903 TTC5Q8N0Z6 440 aa9.05□□□□□ -0.96
CCDC88A-213ENST00000476903 DLG5Q8TDM6 1919 aa9.05□□□□□ -0.96
CCDC88A-213ENST00000476903 N4BP2Q86UW6 1770 aaPredicted RBP9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 CEMIPQ8WUJ3 1361 aa9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 A0A1W2PNR3 127 aa9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 GRIN3BO60391 1043 aa9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 GYS1P13807 737 aa9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 PCBP4P57723 403 aaKnown RBP9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 COL9A3Q14050 684 aaPredicted RBP9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 ZNF468Q5VIY5 522 aaPredicted RBP9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 INTS5Q6P9B9 1019 aaKnown RBP9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 DNAJC10Q8IXB1 793 aa9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 BANK1Q8NDB2 785 aa9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 IL17REQ8NFR9 667 aa9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 PHACTR3Q96KR7 559 aa9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 CCDC87Q9NVE4 849 aa9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 NDUFB9Q9Y6M9 179 aa9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 USP42Q9H9J4 1324 aaKnown RBP9.04□□□□□ -0.96
CCDC88A-213ENST00000476903 KIAA1551Q9HCM1 1747 aa9.03□□□□□ -0.96
CCDC88A-213ENST00000476903 CYP19A1P11511 503 aaPredicted RBP9.03□□□□□ -0.96
CCDC88A-213ENST00000476903 YBX3P16989 372 aaKnown RBP eCLIP9.03□□□□□ -0.961e-6■■□□□ 11.8
CCDC88A-213ENST00000476903 USP4Q13107 963 aa9.03□□□□□ -0.96
CCDC88A-213ENST00000476903 RTF1Q92541 710 aaKnown RBP9.03□□□□□ -0.96
CCDC88A-213ENST00000476903 SOS1Q07889 1333 aaPredicted RBP9.03□□□□□ -0.96
CCDC88A-213ENST00000476903 BRCA1P38398 1863 aaKnown RBP9.02□□□□□ -0.96
CCDC88A-213ENST00000476903 DYRK3O43781 588 aa9.02□□□□□ -0.97
CCDC88A-213ENST00000476903 STARD3NLO95772 234 aa9.02□□□□□ -0.97
CCDC88A-213ENST00000476903 INHAP05111 366 aa9.02□□□□□ -0.97
CCDC88A-213ENST00000476903 NEFMP07197 916 aa9.02□□□□□ -0.97
CCDC88A-213ENST00000476903 ZNF790Q6PG37 636 aa9.02□□□□□ -0.97
CCDC88A-213ENST00000476903 PARP3Q9Y6F1 533 aa9.02□□□□□ -0.97
CCDC88A-213ENST00000476903 C10orf71Q711Q0 1435 aa9.02□□□□□ -0.97
CCDC88A-213ENST00000476903 COL15A1P39059 1388 aa9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 HEG1Q9ULI3 1381 aa9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 AFDNP55196 1824 aaKnown RBP9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 BTBD11A6QL63 1104 aa9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 KHNYNO15037 678 aaKnown RBP9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 FAM157BP0CG42 384 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms