RNA–Protein interactions for RNA: ENST00000474258.1

SEMA4D-216, Transcript of semaphorin 4D, humanhuman

TSL 4

Gene SEMA4D, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-216ENST00000474258 PHKA1P46020 1223 aa13.73□□□□□ -0.21
SEMA4D-216ENST00000474258 OTOP1Q7RTM1 612 aa13.73□□□□□ -0.21
SEMA4D-216ENST00000474258 ERO1BQ86YB8 467 aa13.73□□□□□ -0.21
SEMA4D-216ENST00000474258 ZGPATQ8N5A5 531 aaKnown RBP13.73□□□□□ -0.21
SEMA4D-216ENST00000474258 FAM151AQ8WW52 585 aa13.73□□□□□ -0.21
SEMA4D-216ENST00000474258 OTUD5Q96G74 571 aa13.73□□□□□ -0.21
SEMA4D-216ENST00000474258 WRNIP1Q96S55 665 aa13.73□□□□□ -0.21
SEMA4D-216ENST00000474258 DAGLAQ9Y4D2 1042 aa13.73□□□□□ -0.21
SEMA4D-216ENST00000474258 CCL15-CCL14A0A0B4J2E2 113 aa13.72□□□□□ -0.21
SEMA4D-216ENST00000474258 SPDYE5A6NIY4 337 aa13.72□□□□□ -0.21
SEMA4D-216ENST00000474258 SRGAP3O43295 1099 aa13.72□□□□□ -0.21
SEMA4D-216ENST00000474258 TIMM10P62072 90 aa13.72□□□□□ -0.21
SEMA4D-216ENST00000474258 SP3Q02447 781 aa13.72□□□□□ -0.21
SEMA4D-216ENST00000474258 DIXDC1Q155Q3 683 aa13.72□□□□□ -0.21
SEMA4D-216ENST00000474258 CCL15Q16663 113 aa13.72□□□□□ -0.21
SEMA4D-216ENST00000474258 CCDC102BQ68D86 513 aa13.72□□□□□ -0.21
SEMA4D-216ENST00000474258 CDC42EP5Q6NZY7 148 aa13.72□□□□□ -0.21
SEMA4D-216ENST00000474258 BRI3BPQ8WY22 251 aa13.72□□□□□ -0.21
SEMA4D-216ENST00000474258 ZNF341Q9BYN7 854 aa13.72□□□□□ -0.21
SEMA4D-216ENST00000474258 ZFYVE28Q9HCC9 887 aa13.72□□□□□ -0.21
SEMA4D-216ENST00000474258 AKAP2Q9Y2D5 859 aa13.72□□□□□ -0.21
SEMA4D-216ENST00000474258 SNCAIPQ9Y6H5 919 aa13.72□□□□□ -0.21
SEMA4D-216ENST00000474258 TRIM27P14373 513 aa13.71□□□□□ -0.21
SEMA4D-216ENST00000474258 ADORA1P30542 326 aa13.71□□□□□ -0.21
SEMA4D-216ENST00000474258 TCP10Q12799 353 aa13.71□□□□□ -0.21
SEMA4D-216ENST00000474258 MTX1Q13505 466 aa13.71□□□□□ -0.21
SEMA4D-216ENST00000474258 TAF1CQ15572 869 aaPredicted RBP13.71□□□□□ -0.21
SEMA4D-216ENST00000474258 ATF7IPQ6VMQ6 1270 aa13.71□□□□□ -0.21
SEMA4D-216ENST00000474258 MIGA2Q7L4E1 593 aa13.71□□□□□ -0.21
SEMA4D-216ENST00000474258 CD99L2Q8TCZ2 262 aa13.71□□□□□ -0.21
SEMA4D-216ENST00000474258 ZKSCAN4Q969J2 545 aaPredicted RBP13.71□□□□□ -0.21
SEMA4D-216ENST00000474258 USP40Q9NVE5 1235 aa13.71□□□□□ -0.21
SEMA4D-216ENST00000474258 DOCK2Q92608 1830 aa13.71□□□□□ -0.22
SEMA4D-216ENST00000474258 WDHD1O75717 1129 aaPredicted RBP13.7□□□□□ -0.22
SEMA4D-216ENST00000474258 BCAR3O75815 825 aa13.7□□□□□ -0.22
SEMA4D-216ENST00000474258 CETPP11597 493 aa13.7□□□□□ -0.22
SEMA4D-216ENST00000474258 SNAPC2Q13487 334 aa13.7□□□□□ -0.22
SEMA4D-216ENST00000474258 ARHGEF6Q15052 776 aa13.7□□□□□ -0.22
SEMA4D-216ENST00000474258 FAM43AQ8N2R8 423 aa13.7□□□□□ -0.22
SEMA4D-216ENST00000474258 FRAT1Q92837 279 aaPredicted RBP13.7□□□□□ -0.22
SEMA4D-216ENST00000474258 EFCC1Q9HA90 598 aa13.7□□□□□ -0.22
SEMA4D-216ENST00000474258 PTPN22Q9Y2R2 807 aa13.7□□□□□ -0.22
SEMA4D-216ENST00000474258 PDS5AQ29RF7 1337 aaKnown RBP13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 RBBP6Q7Z6E9 1792 aaKnown RBP13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 A0A1B0GUL7 405 aa13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 IRF6O14896 467 aa13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 GNAI2P04899 355 aa13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 PPATQ06203 517 aa13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 TFCP2Q12800 502 aa13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 NFIAQ12857 509 aa13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 PPIL2Q13356 520 aa13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 MVPQ14764 893 aaKnown RBP13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 SPTY2D1Q68D10 685 aaPredicted RBP13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 SLF2Q8IX21 1173 aa13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 XAGE2Q96GT9 111 aa13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 ZCCHC17Q9NP64 241 aaKnown RBP13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 FAM198AQ9UFP1 575 aa13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 ZNF112Q9UJU3 913 aa13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 KIAA0100Q14667 2235 aaKnown RBP13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 TNRC18O15417 2968 aaPredicted RBP13.69□□□□□ -0.22
SEMA4D-216ENST00000474258 INPP5BP32019 993 aa13.68□□□□□ -0.22
SEMA4D-216ENST00000474258 RASGRF1Q13972 1273 aa13.68□□□□□ -0.22
SEMA4D-216ENST00000474258 DZIP1Q86YF9 867 aaKnown RBP13.68□□□□□ -0.22
SEMA4D-216ENST00000474258 CLUAP1Q96AJ1 413 aa13.68□□□□□ -0.22
SEMA4D-216ENST00000474258 NEUROD6Q96NK8 337 aa13.68□□□□□ -0.22
SEMA4D-216ENST00000474258 ABCF2Q9UG63 623 aa13.68□□□□□ -0.22
SEMA4D-216ENST00000474258 GAKO14976 1311 aa13.67□□□□□ -0.22
SEMA4D-216ENST00000474258 BTBD19C9JJ37 291 aa13.67□□□□□ -0.22
SEMA4D-216ENST00000474258 ENTPD3O75355 529 aa13.67□□□□□ -0.22
SEMA4D-216ENST00000474258 G3BP1Q13283 466 aaKnown RBP eCLIP13.67□□□□□ -0.22
SEMA4D-216ENST00000474258 FAM163AQ96GL9 167 aaPredicted RBP13.67□□□□□ -0.22
SEMA4D-216ENST00000474258 IDI2Q9BXS1 227 aa13.67□□□□□ -0.22
SEMA4D-216ENST00000474258 TNNQ9UQP3 1299 aa13.67□□□□□ -0.22
SEMA4D-216ENST00000474258 PTPRFP10586 1907 aa13.66□□□□□ -0.22
SEMA4D-216ENST00000474258 TLR2O60603 784 aa13.66□□□□□ -0.22
SEMA4D-216ENST00000474258 RGS3P49796 1198 aa13.66□□□□□ -0.22
SEMA4D-216ENST00000474258 CAP1Q01518 475 aa13.66□□□□□ -0.22
SEMA4D-216ENST00000474258 NOL9Q5SY16 702 aaKnown RBP13.66□□□□□ -0.22
SEMA4D-216ENST00000474258 GORABQ5T7V8 394 aa13.66□□□□□ -0.22
SEMA4D-216ENST00000474258 ZKSCAN2Q63HK3 967 aa13.66□□□□□ -0.22
SEMA4D-216ENST00000474258 ERICH6Q7L0X2 663 aa13.66□□□□□ -0.22
SEMA4D-216ENST00000474258 ZFPM1Q8IX07 1006 aa13.66□□□□□ -0.22
SEMA4D-216ENST00000474258 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.66□□□□□ -0.22
SEMA4D-216ENST00000474258 MGAMO43451 1857 aa13.65□□□□□ -0.22
SEMA4D-216ENST00000474258 MYO5AQ9Y4I1 1855 aaKnown RBP13.65□□□□□ -0.22
SEMA4D-216ENST00000474258 ZSWIM8A7E2V4 1837 aa13.65□□□□□ -0.22
SEMA4D-216ENST00000474258 PHIPQ8WWQ0 1821 aa13.65□□□□□ -0.22
SEMA4D-216ENST00000474258 PNMA6EA0A0J9YXQ4 647 aa13.65□□□□□ -0.22
SEMA4D-216ENST00000474258 KIF22Q14807 665 aa13.65□□□□□ -0.22
SEMA4D-216ENST00000474258 TMEM57Q8N5G2 664 aa13.65□□□□□ -0.22
SEMA4D-216ENST00000474258 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.65□□□□□ -0.22
SEMA4D-216ENST00000474258 KCNH4Q9UQ05 1017 aa13.65□□□□□ -0.22
SEMA4D-216ENST00000474258 DOCK1Q14185 1865 aa13.65□□□□□ -0.22
SEMA4D-216ENST00000474258 BTDP43251 543 aa13.64□□□□□ -0.23
SEMA4D-216ENST00000474258 MECOMQ03112 1051 aa13.64□□□□□ -0.23
SEMA4D-216ENST00000474258 ANKRD23Q86SG2 305 aa13.64□□□□□ -0.23
SEMA4D-216ENST00000474258 NBPF11Q86T75 865 aa13.64□□□□□ -0.23
SEMA4D-216ENST00000474258 ZSCAN29Q8IWY8 852 aaPredicted RBP13.64□□□□□ -0.23
SEMA4D-216ENST00000474258 SPATA5Q8NB90 893 aa13.64□□□□□ -0.23
SEMA4D-216ENST00000474258 ARMC5Q96C12 935 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms