RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 SALL1Q9NSC2 1324 aa24.54■■□□□ 1.52
COL9A3-210ENST00000472880 TAF1CQ15572 869 aaPredicted RBP24.53■■□□□ 1.52
COL9A3-210ENST00000472880 ERO1BQ86YB8 467 aa24.53■■□□□ 1.52
COL9A3-210ENST00000472880 ZNF341Q9BYN7 854 aa24.53■■□□□ 1.52
COL9A3-210ENST00000472880 SP3Q02447 781 aa24.52■■□□□ 1.52
COL9A3-210ENST00000472880 CDC42EP5Q6NZY7 148 aa24.52■■□□□ 1.52
COL9A3-210ENST00000472880 FAM151AQ8WW52 585 aa24.52■■□□□ 1.52
COL9A3-210ENST00000472880 ZKSCAN4Q969J2 545 aaPredicted RBP24.52■■□□□ 1.52
COL9A3-210ENST00000472880 ZFYVE28Q9HCC9 887 aa24.52■■□□□ 1.52
COL9A3-210ENST00000472880 IPO8O15397 1037 aaKnown RBP24.51■■□□□ 1.51
COL9A3-210ENST00000472880 SRGAP3O43295 1099 aa24.51■■□□□ 1.51
COL9A3-210ENST00000472880 ADORA1P30542 326 aa24.51■■□□□ 1.51
COL9A3-210ENST00000472880 CCDC102BQ68D86 513 aa24.51■■□□□ 1.51
COL9A3-210ENST00000472880 ZGPATQ8N5A5 531 aaKnown RBP24.51■■□□□ 1.51
COL9A3-210ENST00000472880 TNRC18O15417 2968 aaPredicted RBP24.51■■□□□ 1.51
COL9A3-210ENST00000472880 WDHD1O75717 1129 aaPredicted RBP24.5■■□□□ 1.51
COL9A3-210ENST00000472880 CETPP11597 493 aa24.5■■□□□ 1.51
COL9A3-210ENST00000472880 TCP10Q12799 353 aa24.5■■□□□ 1.51
COL9A3-210ENST00000472880 MIGA2Q7L4E1 593 aa24.5■■□□□ 1.51
COL9A3-210ENST00000472880 EFCC1Q9HA90 598 aa24.5■■□□□ 1.51
COL9A3-210ENST00000472880 PPIL2Q13356 520 aa24.49■■□□□ 1.51
COL9A3-210ENST00000472880 SNAPC2Q13487 334 aa24.49■■□□□ 1.51
COL9A3-210ENST00000472880 MTX1Q13505 466 aa24.49■■□□□ 1.51
COL9A3-210ENST00000472880 FAM43AQ8N2R8 423 aa24.49■■□□□ 1.51
COL9A3-210ENST00000472880 USP40Q9NVE5 1235 aa24.49■■□□□ 1.51
COL9A3-210ENST00000472880 AKAP2Q9Y2D5 859 aa24.49■■□□□ 1.51
COL9A3-210ENST00000472880 ZBTB22O15209 634 aa24.48■■□□□ 1.51
COL9A3-210ENST00000472880 TRIM27P14373 513 aa24.48■■□□□ 1.51
COL9A3-210ENST00000472880 NFIAQ12857 509 aa24.48■■□□□ 1.51
COL9A3-210ENST00000472880 FRAT1Q92837 279 aaPredicted RBP24.48■■□□□ 1.51
COL9A3-210ENST00000472880 PTPN22Q9Y2R2 807 aa24.48■■□□□ 1.51
COL9A3-210ENST00000472880 PDS5AQ29RF7 1337 aaKnown RBP24.47■■□□□ 1.51
COL9A3-210ENST00000472880 A0A1B0GUL7 405 aa24.47■■□□□ 1.51
COL9A3-210ENST00000472880 IRF6O14896 467 aa24.47■■□□□ 1.51
COL9A3-210ENST00000472880 TIMM10P62072 90 aa24.47■■□□□ 1.51
COL9A3-210ENST00000472880 RASGRF1Q13972 1273 aa24.47■■□□□ 1.51
COL9A3-210ENST00000472880 ATF7IPQ6VMQ6 1270 aa24.47■■□□□ 1.51
COL9A3-210ENST00000472880 DZIP1Q86YF9 867 aaKnown RBP24.47■■□□□ 1.51
COL9A3-210ENST00000472880 AK9Q5TCS8 1911 aa24.47■■□□□ 1.51
COL9A3-210ENST00000472880 MYH2Q9UKX2 1941 aa24.46■■□□□ 1.51
COL9A3-210ENST00000472880 INPP5BP32019 993 aa24.46■■□□□ 1.51
COL9A3-210ENST00000472880 TFCP2Q12800 502 aa24.46■■□□□ 1.51
COL9A3-210ENST00000472880 MVPQ14764 893 aaKnown RBP24.46■■□□□ 1.51
COL9A3-210ENST00000472880 ARHGEF6Q15052 776 aa24.46■■□□□ 1.51
COL9A3-210ENST00000472880 ZCCHC17Q9NP64 241 aaKnown RBP24.46■■□□□ 1.51
COL9A3-210ENST00000472880 FAM198AQ9UFP1 575 aa24.46■■□□□ 1.51
COL9A3-210ENST00000472880 DOCK2Q92608 1830 aa24.45■■□□□ 1.5
COL9A3-210ENST00000472880 GNAI2P04899 355 aa24.45■■□□□ 1.5
COL9A3-210ENST00000472880 PPATQ06203 517 aa24.45■■□□□ 1.5
COL9A3-210ENST00000472880 SLF2Q8IX21 1173 aa24.45■■□□□ 1.5
COL9A3-210ENST00000472880 XAGE2Q96GT9 111 aa24.45■■□□□ 1.5
COL9A3-210ENST00000472880 ABCF2Q9UG63 623 aa24.45■■□□□ 1.5
COL9A3-210ENST00000472880 GAKO14976 1311 aa24.44■■□□□ 1.5
COL9A3-210ENST00000472880 BTBD19C9JJ37 291 aa24.44■■□□□ 1.5
COL9A3-210ENST00000472880 BCAR3O75815 825 aa24.44■■□□□ 1.5
COL9A3-210ENST00000472880 SPTY2D1Q68D10 685 aaPredicted RBP24.44■■□□□ 1.5
COL9A3-210ENST00000472880 CLUAP1Q96AJ1 413 aa24.44■■□□□ 1.5
COL9A3-210ENST00000472880 TNNQ9UQP3 1299 aa24.44■■□□□ 1.5
COL9A3-210ENST00000472880 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.43■■□□□ 1.5
COL9A3-210ENST00000472880 NEUROD6Q96NK8 337 aa24.43■■□□□ 1.5
COL9A3-210ENST00000472880 ZNF112Q9UJU3 913 aa24.43■■□□□ 1.5
COL9A3-210ENST00000472880 PDE4DIPQ5VU43 2346 aa24.43■■□□□ 1.5
COL9A3-210ENST00000472880 TLR2O60603 784 aa24.42■■□□□ 1.5
COL9A3-210ENST00000472880 RGS3P49796 1198 aa24.42■■□□□ 1.5
COL9A3-210ENST00000472880 CAP1Q01518 475 aa24.42■■□□□ 1.5
COL9A3-210ENST00000472880 RFX7Q2KHR2 1363 aa24.42■■□□□ 1.5
COL9A3-210ENST00000472880 HTTP42858 3142 aa24.41■■□□□ 1.5
COL9A3-210ENST00000472880 ENTPD3O75355 529 aa24.41■■□□□ 1.5
COL9A3-210ENST00000472880 NOL9Q5SY16 702 aaKnown RBP24.41■■□□□ 1.5
COL9A3-210ENST00000472880 GORABQ5T7V8 394 aa24.41■■□□□ 1.5
COL9A3-210ENST00000472880 IDI2Q9BXS1 227 aa24.41■■□□□ 1.5
COL9A3-210ENST00000472880 RBBP6Q7Z6E9 1792 aaKnown RBP24.4■■□□□ 1.5
COL9A3-210ENST00000472880 KIF22Q14807 665 aa24.4■■□□□ 1.5
COL9A3-210ENST00000472880 PRPF38BQ5VTL8 546 aaKnown RBP24.4■■□□□ 1.5
COL9A3-210ENST00000472880 ERICH6Q7L0X2 663 aa24.4■■□□□ 1.5
COL9A3-210ENST00000472880 ZSCAN29Q8IWY8 852 aaPredicted RBP24.4■■□□□ 1.5
COL9A3-210ENST00000472880 ZFPM1Q8IX07 1006 aa24.4■■□□□ 1.5
COL9A3-210ENST00000472880 ARMC5Q96C12 935 aa24.4■■□□□ 1.5
COL9A3-210ENST00000472880 MROH7-TTC4A0A0A0MT08 1334 aa24.39■■□□□ 1.5
COL9A3-210ENST00000472880 BTDP43251 543 aa24.39■■□□□ 1.49
COL9A3-210ENST00000472880 G3BP1Q13283 466 aaKnown RBP eCLIP24.39■■□□□ 1.49
COL9A3-210ENST00000472880 ZKSCAN2Q63HK3 967 aa24.39■■□□□ 1.49
COL9A3-210ENST00000472880 KCNH4Q9UQ05 1017 aa24.39■■□□□ 1.49
COL9A3-210ENST00000472880 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.39■■□□□ 1.49
COL9A3-210ENST00000472880 ATRNL1Q5VV63 1379 aa24.39■■□□□ 1.49
COL9A3-210ENST00000472880 PNMA6EA0A0J9YXQ4 647 aa24.38■■□□□ 1.49
COL9A3-210ENST00000472880 SLC34A2O95436 690 aa24.38■■□□□ 1.49
COL9A3-210ENST00000472880 ANKRD23Q86SG2 305 aa24.38■■□□□ 1.49
COL9A3-210ENST00000472880 TMEM57Q8N5G2 664 aa24.38■■□□□ 1.49
COL9A3-210ENST00000472880 FAM163AQ96GL9 167 aaPredicted RBP24.38■■□□□ 1.49
COL9A3-210ENST00000472880 POTEFA5A3E0 1075 aa24.37■■□□□ 1.49
COL9A3-210ENST00000472880 LACTBP83111 547 aaPredicted RBP24.37■■□□□ 1.49
COL9A3-210ENST00000472880 MECOMQ03112 1051 aa24.37■■□□□ 1.49
COL9A3-210ENST00000472880 PICALMQ13492 652 aa24.37■■□□□ 1.49
COL9A3-210ENST00000472880 SLC9C1Q4G0N8 1177 aa24.37■■□□□ 1.49
COL9A3-210ENST00000472880 HMG20BQ9P0W2 317 aa24.37■■□□□ 1.49
COL9A3-210ENST00000472880 PTCH2Q9Y6C5 1203 aa24.37■■□□□ 1.49
COL9A3-210ENST00000472880 ZSWIM8A7E2V4 1837 aa24.36■■□□□ 1.49
COL9A3-210ENST00000472880 PDHXO00330 501 aa24.36■■□□□ 1.49
COL9A3-210ENST00000472880 HNRNPUQ00839 825 aaKnown RBP eCLIP24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms