RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 FAM117BQ6P1L5 589 aa6.9□□□□□ -1.3
VPS13A-210ENST00000471439 PI16Q6UXB8 463 aa6.9□□□□□ -1.3
VPS13A-210ENST00000471439 DZIP1LQ8IYY4 767 aaKnown RBP6.9□□□□□ -1.3
VPS13A-210ENST00000471439 TMEM130Q8N3G9 435 aa6.9□□□□□ -1.3
VPS13A-210ENST00000471439 LIN7BQ9HAP6 207 aa6.9□□□□□ -1.3
VPS13A-210ENST00000471439 FAM177BA6PVY3 158 aa6.89□□□□□ -1.31
VPS13A-210ENST00000471439 EIF1AYO14602 144 aaKnown RBP6.89□□□□□ -1.31
VPS13A-210ENST00000471439 IKBKEQ14164 716 aa6.89□□□□□ -1.31
VPS13A-210ENST00000471439 DUOXA2Q1HG44 320 aa6.89□□□□□ -1.31
VPS13A-210ENST00000471439 CCNJLQ8IV13 435 aa6.89□□□□□ -1.31
VPS13A-210ENST00000471439 KLHL23Q8NBE8 558 aa6.89□□□□□ -1.31
VPS13A-210ENST00000471439 RGS12O14924 1447 aa6.89□□□□□ -1.31
VPS13A-210ENST00000471439 FHOD3Q2V2M9 1422 aa6.89□□□□□ -1.31
VPS13A-210ENST00000471439 DENND4BO75064 1496 aaPredicted RBP6.89□□□□□ -1.31
VPS13A-210ENST00000471439 ABCA9Q8IUA7 1624 aa6.89□□□□□ -1.31
VPS13A-210ENST00000471439 NHSL1Q5SYE7 1610 aa6.88□□□□□ -1.31
VPS13A-210ENST00000471439 ZMYM4Q5VZL5 1548 aa6.88□□□□□ -1.31
VPS13A-210ENST00000471439 CPNE3O75131 537 aaKnown RBP6.88□□□□□ -1.31
VPS13A-210ENST00000471439 DLGAP3O95886 979 aa6.88□□□□□ -1.31
VPS13A-210ENST00000471439 H2AFB1P0C5Y9 115 aa6.88□□□□□ -1.31
VPS13A-210ENST00000471439 H2AFB2P0C5Z0 115 aa6.88□□□□□ -1.31
VPS13A-210ENST00000471439 ESRRAP11474 423 aaPredicted RBP6.88□□□□□ -1.31
VPS13A-210ENST00000471439 PDE3BQ13370 1112 aa6.88□□□□□ -1.31
VPS13A-210ENST00000471439 CCDC74AQ96AQ1 378 aa6.88□□□□□ -1.31
VPS13A-210ENST00000471439 RBCK1Q9BYM8 510 aa6.88□□□□□ -1.31
VPS13A-210ENST00000471439 VWDEQ8N2E2 1590 aa6.87□□□□□ -1.31
VPS13A-210ENST00000471439 A0A096LPE4 126 aa6.87□□□□□ -1.31
VPS13A-210ENST00000471439 A0A1W2PPZ6 126 aa6.87□□□□□ -1.31
VPS13A-210ENST00000471439 MAPK1P28482 360 aa6.87□□□□□ -1.31
VPS13A-210ENST00000471439 C19orf57Q0VDD7 668 aa6.87□□□□□ -1.31
VPS13A-210ENST00000471439 PRR23CQ6ZRP0 262 aa6.87□□□□□ -1.31
VPS13A-210ENST00000471439 ARMC10Q8N2F6 343 aa6.87□□□□□ -1.31
VPS13A-210ENST00000471439 EPS8L3Q8TE67 593 aaKnown RBP6.87□□□□□ -1.31
VPS13A-210ENST00000471439 SETDB2Q96T68 719 aa6.87□□□□□ -1.31
VPS13A-210ENST00000471439 USP26Q9BXU7 913 aa6.87□□□□□ -1.31
VPS13A-210ENST00000471439 DCTN4Q9UJW0 460 aa6.87□□□□□ -1.31
VPS13A-210ENST00000471439 STRCP1A6NGW2 1772 aa6.87□□□□□ -1.31
VPS13A-210ENST00000471439 LRP6O75581 1613 aa6.87□□□□□ -1.31
VPS13A-210ENST00000471439 CTSBP07858 339 aa6.86□□□□□ -1.31
VPS13A-210ENST00000471439 ZNF423Q2M1K9 1284 aa6.86□□□□□ -1.31
VPS13A-210ENST00000471439 WNT8BQ93098 351 aa6.86□□□□□ -1.31
VPS13A-210ENST00000471439 CITED4Q96RK1 184 aa6.86□□□□□ -1.31
VPS13A-210ENST00000471439 CSRNP1Q96S65 589 aa6.86□□□□□ -1.31
VPS13A-210ENST00000471439 ABCB6Q9NP58 842 aa6.86□□□□□ -1.31
VPS13A-210ENST00000471439 OSGEPQ9NPF4 335 aa6.86□□□□□ -1.31
VPS13A-210ENST00000471439 WRNQ14191 1432 aaPredicted RBP eCLIP6.85□□□□□ -1.31
VPS13A-210ENST00000471439 ZNF142P52746 1687 aaPredicted RBP6.85□□□□□ -1.31
VPS13A-210ENST00000471439 LOC100289279A0A1B0GTE1 492 aa6.85□□□□□ -1.31
VPS13A-210ENST00000471439 PATL2C9JE40 543 aaKnown RBP6.85□□□□□ -1.31
VPS13A-210ENST00000471439 ECEL1O95672 775 aa6.85□□□□□ -1.31
VPS13A-210ENST00000471439 PREPP48147 710 aa6.85□□□□□ -1.31
VPS13A-210ENST00000471439 GSTM4Q03013 218 aa6.85□□□□□ -1.31
VPS13A-210ENST00000471439 PCDH1Q08174 1060 aa6.85□□□□□ -1.31
VPS13A-210ENST00000471439 ZMYM1Q5SVZ6 1142 aa6.85□□□□□ -1.31
VPS13A-210ENST00000471439 MEX3CQ5U5Q3 659 aaKnown RBP6.85□□□□□ -1.31
VPS13A-210ENST00000471439 KIAA0319Q5VV43 1072 aa6.85□□□□□ -1.31
VPS13A-210ENST00000471439 GLIS3Q8NEA6 775 aa6.85□□□□□ -1.31
VPS13A-210ENST00000471439 NRSN2Q9GZP1 204 aa6.85□□□□□ -1.31
VPS13A-210ENST00000471439 EHD4Q9H223 541 aa6.85□□□□□ -1.31
VPS13A-210ENST00000471439 DISP1Q96F81 1524 aa6.85□□□□□ -1.31
VPS13A-210ENST00000471439 MAGI2Q86UL8 1455 aa6.85□□□□□ -1.31
VPS13A-210ENST00000471439 FAM135BQ49AJ0 1406 aa6.84□□□□□ -1.31
VPS13A-210ENST00000471439 HECW1Q76N89 1606 aa6.84□□□□□ -1.31
VPS13A-210ENST00000471439 GRM2Q14416 872 aa6.84□□□□□ -1.31
VPS13A-210ENST00000471439 SND1Q7KZF4 910 aaKnown RBP eCLIP6.84□□□□□ -1.31
VPS13A-210ENST00000471439 Q8N3U1 123 aa6.84□□□□□ -1.31
VPS13A-210ENST00000471439 DCAF11Q8TEB1 546 aa6.84□□□□□ -1.31
VPS13A-210ENST00000471439 ALKBH8Q96BT7 664 aaKnown RBP6.84□□□□□ -1.31
VPS13A-210ENST00000471439 DMRTB1Q96MA1 342 aa6.84□□□□□ -1.31
VPS13A-210ENST00000471439 RUSC1Q9BVN2 902 aa6.84□□□□□ -1.31
VPS13A-210ENST00000471439 ZNF576Q9H609 170 aa6.84□□□□□ -1.31
VPS13A-210ENST00000471439 ATP10AO60312 1499 aa6.84□□□□□ -1.31
VPS13A-210ENST00000471439 NEURL4Q96JN8 1562 aa6.83□□□□□ -1.32
VPS13A-210ENST00000471439 UTRNP46939 3433 aa6.83□□□□□ -1.32
VPS13A-210ENST00000471439 PNMA6FA0A0J9YX94 578 aa6.83□□□□□ -1.32
VPS13A-210ENST00000471439 GADD45BO75293 160 aaPredicted RBP6.83□□□□□ -1.32
VPS13A-210ENST00000471439 PRELPP51888 382 aa6.83□□□□□ -1.32
VPS13A-210ENST00000471439 DSC3Q14574 896 aa6.83□□□□□ -1.32
VPS13A-210ENST00000471439 XP32Q5T750 250 aa6.83□□□□□ -1.32
VPS13A-210ENST00000471439 UTP4Q969X6 686 aaKnown RBP6.83□□□□□ -1.32
VPS13A-210ENST00000471439 FAM46AQ96IP4 442 aaKnown RBP6.83□□□□□ -1.32
VPS13A-210ENST00000471439 TRIM56Q9BRZ2 755 aaKnown RBP6.83□□□□□ -1.32
VPS13A-210ENST00000471439 CLEC4MQ9H2X3 399 aaPredicted RBP6.83□□□□□ -1.32
VPS13A-210ENST00000471439 POLR1AO95602 1720 aaPredicted RBP6.83□□□□□ -1.32
VPS13A-210ENST00000471439 C9orf84Q5VXU9 1444 aa6.83□□□□□ -1.32
VPS13A-210ENST00000471439 ROBO1Q9Y6N7 1651 aa6.82□□□□□ -1.32
VPS13A-210ENST00000471439 ARL4DP49703 201 aa6.82□□□□□ -1.32
VPS13A-210ENST00000471439 FAAP100Q0VG06 881 aa6.82□□□□□ -1.32
VPS13A-210ENST00000471439 TMCO4Q5TGY1 634 aa6.82□□□□□ -1.32
VPS13A-210ENST00000471439 RNF208Q9H0X6 261 aa6.82□□□□□ -1.32
VPS13A-210ENST00000471439 DNAJC25Q9H1X3 360 aa6.82□□□□□ -1.32
VPS13A-210ENST00000471439 JCADQ9P266 1359 aa6.82□□□□□ -1.32
VPS13A-210ENST00000471439 MYO3AQ8NEV4 1616 aa6.81□□□□□ -1.32
VPS13A-210ENST00000471439 TREHO43280 583 aa6.81□□□□□ -1.32
VPS13A-210ENST00000471439 NEFLP07196 543 aa6.81□□□□□ -1.32
VPS13A-210ENST00000471439 DRD2P14416 443 aa6.81□□□□□ -1.32
VPS13A-210ENST00000471439 ITPKAP23677 461 aa6.81□□□□□ -1.32
VPS13A-210ENST00000471439 ZNF157P51786 506 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-210ENST00000471439 PRPF40BQ6NWY9 871 aaKnown RBP6.81□□□□□ -1.32
VPS13A-210ENST00000471439 CEP41Q9BYV8 373 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms