RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 PRPF40BQ6NWY9 871 aaKnown RBP9.04□□□□□ -0.96
PTCD3-208ENST00000469585 KANK3Q6NY19 840 aa9.04□□□□□ -0.96
PTCD3-208ENST00000469585 NXPE4Q6UWF7 544 aa9.04□□□□□ -0.96
PTCD3-208ENST00000469585 CHSY3Q70JA7 882 aa9.04□□□□□ -0.96
PTCD3-208ENST00000469585 NXPE3Q969Y0 559 aa9.04□□□□□ -0.96
PTCD3-208ENST00000469585 POP1Q99575 1024 aaKnown RBP9.04□□□□□ -0.96
PTCD3-208ENST00000469585 BHLHE41Q9C0J9 482 aaPredicted RBP9.04□□□□□ -0.96
PTCD3-208ENST00000469585 EID1Q9Y6B2 187 aa9.04□□□□□ -0.96
PTCD3-208ENST00000469585 AK5Q9Y6K8 562 aa9.04□□□□□ -0.96
PTCD3-208ENST00000469585 CAMSAP1Q5T5Y3 1602 aa9.04□□□□□ -0.96
PTCD3-208ENST00000469585 HFM1A2PYH4 1435 aa9.04□□□□□ -0.96
PTCD3-208ENST00000469585 RPRD2Q5VT52 1461 aaKnown RBP9.03□□□□□ -0.96
PTCD3-208ENST00000469585 DEPDC5O75140 1603 aa9.03□□□□□ -0.96
PTCD3-208ENST00000469585 LORP23490 312 aaPredicted RBP9.03□□□□□ -0.96
PTCD3-208ENST00000469585 GRIK5Q16478 980 aa9.03□□□□□ -0.96
PTCD3-208ENST00000469585 ADAMTSL4Q6UY14 1074 aa9.03□□□□□ -0.96
PTCD3-208ENST00000469585 MICALL1Q8N3F8 863 aa9.03□□□□□ -0.96
PTCD3-208ENST00000469585 MRRFQ96E11 262 aaKnown RBP9.03□□□□□ -0.96
PTCD3-208ENST00000469585 SRCIN1Q9C0H9 1055 aa9.03□□□□□ -0.96
PTCD3-208ENST00000469585 C12orf49Q9H741 205 aa9.03□□□□□ -0.96
PTCD3-208ENST00000469585 LIN7BQ9HAP6 207 aa9.03□□□□□ -0.96
PTCD3-208ENST00000469585 TRAK1Q9UPV9 953 aa9.03□□□□□ -0.96
PTCD3-208ENST00000469585 PTPRKQ15262 1439 aa9.03□□□□□ -0.96
PTCD3-208ENST00000469585 CEP152O94986 1710 aa9.02□□□□□ -0.96
PTCD3-208ENST00000469585 GCC2Q8IWJ2 1684 aa9.02□□□□□ -0.97
PTCD3-208ENST00000469585 PDE2AO00408 941 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-208ENST00000469585 SMNDC1O75940 238 aaKnown RBP eCLIP9.02□□□□□ -0.97
PTCD3-208ENST00000469585 VAMP1P23763 118 aa9.02□□□□□ -0.97
PTCD3-208ENST00000469585 CEP135Q66GS9 1140 aa9.02□□□□□ -0.97
PTCD3-208ENST00000469585 ANKLE2Q86XL3 938 aa9.02□□□□□ -0.97
PTCD3-208ENST00000469585 NUDT8Q8WV74 236 aa9.02□□□□□ -0.97
PTCD3-208ENST00000469585 ABCB6Q9NP58 842 aa9.02□□□□□ -0.97
PTCD3-208ENST00000469585 SLC52A1Q9NWF4 448 aa9.02□□□□□ -0.97
PTCD3-208ENST00000469585 ARHGAP31Q2M1Z3 1444 aa9.02□□□□□ -0.97
PTCD3-208ENST00000469585 A2ML1A8K2U0 1454 aa9.02□□□□□ -0.97
PTCD3-208ENST00000469585 LMTK3Q96Q04 1460 aa9.02□□□□□ -0.97
PTCD3-208ENST00000469585 UNC13BO14795 1591 aa9.01□□□□□ -0.97
PTCD3-208ENST00000469585 SORBS3O60504 671 aa9.01□□□□□ -0.97
PTCD3-208ENST00000469585 RGS9O75916 674 aaPredicted RBP9.01□□□□□ -0.97
PTCD3-208ENST00000469585 HOXB4P17483 251 aaPredicted RBP9.01□□□□□ -0.97
PTCD3-208ENST00000469585 HSPA2P54652 639 aa9.01□□□□□ -0.97
PTCD3-208ENST00000469585 TRIM33Q9UPN9 1127 aa9.01□□□□□ -0.97
PTCD3-208ENST00000469585 MYO3AQ8NEV4 1616 aa9.01□□□□□ -0.97
PTCD3-208ENST00000469585 ERVK-7P63135 1459 aa9.01□□□□□ -0.97
PTCD3-208ENST00000469585 TET3O43151 1660 aa9□□□□□ -0.97
PTCD3-208ENST00000469585 LMTK2Q8IWU2 1503 aa9□□□□□ -0.97
PTCD3-208ENST00000469585 UGGT1Q9NYU2 1555 aa9□□□□□ -0.97
PTCD3-208ENST00000469585 CEP170BQ9Y4F5 1589 aaPredicted RBP9□□□□□ -0.97
PTCD3-208ENST00000469585 NAIPQ13075 1403 aa9□□□□□ -0.97
PTCD3-208ENST00000469585 METTL12A8MUP2 240 aa9□□□□□ -0.97
PTCD3-208ENST00000469585 M0R082 166 aa9□□□□□ -0.97
PTCD3-208ENST00000469585 ARHGEF15O94989 841 aa9□□□□□ -0.97
PTCD3-208ENST00000469585 EIF4BP23588 611 aaKnown RBP9□□□□□ -0.97
PTCD3-208ENST00000469585 GRIA4P48058 902 aa9□□□□□ -0.97
PTCD3-208ENST00000469585 C8orf86Q6ZUL3 223 aa9□□□□□ -0.97
PTCD3-208ENST00000469585 ZNF417Q8TAU3 575 aa9□□□□□ -0.97
PTCD3-208ENST00000469585 ZNF587Q96SQ5 575 aaPredicted RBP9□□□□□ -0.97
PTCD3-208ENST00000469585 MRS2Q9HD23 443 aa9□□□□□ -0.97
PTCD3-208ENST00000469585 JPH1Q9HDC5 661 aaPredicted RBP9□□□□□ -0.97
PTCD3-208ENST00000469585 EFCAB6Q5THR3 1501 aa9□□□□□ -0.97
PTCD3-208ENST00000469585 SETD5Q9C0A6 1442 aa8.99□□□□□ -0.97
PTCD3-208ENST00000469585 TMEM238LA0A1B0GVL6 79 aa8.99□□□□□ -0.97
PTCD3-208ENST00000469585 CTSHP09668 335 aa8.99□□□□□ -0.97
PTCD3-208ENST00000469585 AFF1P51825 1210 aaKnown RBP8.99□□□□□ -0.97
PTCD3-208ENST00000469585 MAP3K10Q02779 954 aa8.99□□□□□ -0.97
PTCD3-208ENST00000469585 COL9A3Q14050 684 aaPredicted RBP8.99□□□□□ -0.97
PTCD3-208ENST00000469585 SPRED3Q2MJR0 410 aa8.99□□□□□ -0.97
PTCD3-208ENST00000469585 SVOPQ8N4V2 548 aa8.99□□□□□ -0.97
PTCD3-208ENST00000469585 ADAM19Q9H013 955 aa8.99□□□□□ -0.97
PTCD3-208ENST00000469585 PRDM6Q9NQX0 595 aa8.99□□□□□ -0.97
PTCD3-208ENST00000469585 FAM8A1Q9UBU6 413 aa8.99□□□□□ -0.97
PTCD3-208ENST00000469585 IQGAP3Q86VI3 1631 aa8.98□□□□□ -0.97
PTCD3-208ENST00000469585 MROH1Q8NDA8 1641 aa8.98□□□□□ -0.97
PTCD3-208ENST00000469585 ZNF142P52746 1687 aaPredicted RBP8.98□□□□□ -0.97
PTCD3-208ENST00000469585 A0A096LPE4 126 aa8.98□□□□□ -0.97
PTCD3-208ENST00000469585 A0A1W2PPZ6 126 aa8.98□□□□□ -0.97
PTCD3-208ENST00000469585 AMPD1P23109 780 aa8.98□□□□□ -0.97
PTCD3-208ENST00000469585 ITPKAP23677 461 aa8.98□□□□□ -0.97
PTCD3-208ENST00000469585 DGKGP49619 791 aa8.98□□□□□ -0.97
PTCD3-208ENST00000469585 LDLRAD1Q5T700 205 aa8.98□□□□□ -0.97
PTCD3-208ENST00000469585 NPM2Q86SE8 214 aaKnown RBP8.98□□□□□ -0.97
PTCD3-208ENST00000469585 C3orf58Q8NDZ4 430 aa8.98□□□□□ -0.97
PTCD3-208ENST00000469585 BCL11AQ9H165 835 aa8.98□□□□□ -0.97
PTCD3-208ENST00000469585 PPP4R2Q9NY27 417 aa8.98□□□□□ -0.97
PTCD3-208ENST00000469585 SPATA31D1Q6ZQQ2 1576 aa8.98□□□□□ -0.97
PTCD3-208ENST00000469585 CFAP65Q6ZU64 1925 aaKnown RBP8.97□□□□□ -0.97
PTCD3-208ENST00000469585 PLA2R1Q13018 1463 aa8.97□□□□□ -0.97
PTCD3-208ENST00000469585 LILRB5O75023 590 aa8.97□□□□□ -0.97
PTCD3-208ENST00000469585 RECKO95980 971 aa8.97□□□□□ -0.97
PTCD3-208ENST00000469585 USP17L7P0C7H9 530 aa8.97□□□□□ -0.97
PTCD3-208ENST00000469585 PTPRAP18433 802 aa8.97□□□□□ -0.97
PTCD3-208ENST00000469585 BAG6P46379 1132 aa8.97□□□□□ -0.97
PTCD3-208ENST00000469585 FCGRTP55899 365 aa8.97□□□□□ -0.97
PTCD3-208ENST00000469585 PTPN12Q05209 780 aaKnown RBP8.97□□□□□ -0.97
PTCD3-208ENST00000469585 GDF6Q6KF10 455 aaPredicted RBP8.97□□□□□ -0.97
PTCD3-208ENST00000469585 ILDR2Q71H61 639 aa8.97□□□□□ -0.97
PTCD3-208ENST00000469585 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.97□□□□□ -0.97
PTCD3-208ENST00000469585 ASAP3Q8TDY4 903 aa8.97□□□□□ -0.97
PTCD3-208ENST00000469585 BSNDQ8WZ55 320 aa8.97□□□□□ -0.97
PTCD3-208ENST00000469585 LACRTQ9GZZ8 138 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms