RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 FAM217BQ9NTX9 383 aaPredicted RBP22.24■■□□□ 1.15
VIM-203ENST00000469543 COL4A1P02462 1669 aa22.24■■□□□ 1.15
VIM-203ENST00000469543 GSG1L2A8MUP6 293 aa22.24■■□□□ 1.15
VIM-203ENST00000469543 RANBP6O60518 1105 aaKnown RBP22.24■■□□□ 1.15
VIM-203ENST00000469543 WDHD1O75717 1129 aaPredicted RBP22.24■■□□□ 1.15
VIM-203ENST00000469543 UQCRFS1P1P0C7P4 283 aa22.24■■□□□ 1.15
VIM-203ENST00000469543 ADALQ6DHV7 355 aa22.24■■□□□ 1.15
VIM-203ENST00000469543 PLA2G4DQ86XP0 818 aa22.24■■□□□ 1.15
VIM-203ENST00000469543 ARID3AQ99856 593 aa22.24■■□□□ 1.15
VIM-203ENST00000469543 ABCC12Q96J65 1359 aa22.24■■□□□ 1.15
VIM-203ENST00000469543 SPATA31A1Q5TZJ5 1347 aa22.24■■□□□ 1.15
VIM-203ENST00000469543 CHRNDQ07001 517 aa22.24■■□□□ 1.15
VIM-203ENST00000469543 CCDC24Q8N4L8 307 aa22.24■■□□□ 1.15
VIM-203ENST00000469543 ABCF2Q9UG63 623 aa22.24■■□□□ 1.15
VIM-203ENST00000469543 PATL2C9JE40 543 aaKnown RBP22.23■■□□□ 1.15
VIM-203ENST00000469543 SPTLC2O15270 562 aa22.23■■□□□ 1.15
VIM-203ENST00000469543 GYG1P46976 350 aa22.23■■□□□ 1.15
VIM-203ENST00000469543 MAP3K12Q12852 859 aa22.23■■□□□ 1.15
VIM-203ENST00000469543 TMEM67Q5HYA8 995 aa22.23■■□□□ 1.15
VIM-203ENST00000469543 MRPS27Q92552 414 aaKnown RBP22.23■■□□□ 1.15
VIM-203ENST00000469543 LY9Q9HBG7 655 aa22.23■■□□□ 1.15
VIM-203ENST00000469543 MYH14Q7Z406 1995 aaKnown RBP22.23■■□□□ 1.15
VIM-203ENST00000469543 GUCY1A2P33402 732 aa22.23■■□□□ 1.15
VIM-203ENST00000469543 SYNE3Q6ZMZ3 975 aa22.23■■□□□ 1.15
VIM-203ENST00000469543 SDR42E1Q8WUS8 393 aa22.23■■□□□ 1.15
VIM-203ENST00000469543 NTSR2O95665 410 aa22.22■■□□□ 1.15
VIM-203ENST00000469543 DHX40Q8IX18 779 aaKnown RBP22.22■■□□□ 1.15
VIM-203ENST00000469543 LRP2BPQ9P2M1 347 aa22.22■■□□□ 1.15
VIM-203ENST00000469543 KRT40Q6A162 431 aa22.22■■□□□ 1.15
VIM-203ENST00000469543 CLIP2Q9UDT6 1046 aa22.22■■□□□ 1.15
VIM-203ENST00000469543 MYH15Q9Y2K3 1946 aa22.21■■□□□ 1.15
VIM-203ENST00000469543 IFIT3O14879 490 aaKnown RBP22.21■■□□□ 1.15
VIM-203ENST00000469543 NTRK3Q16288 839 aa22.21■■□□□ 1.15
VIM-203ENST00000469543 VPS37DQ86XT2 251 aa22.21■■□□□ 1.15
VIM-203ENST00000469543 SLC4A4Q9Y6R1 1079 aa22.21■■□□□ 1.15
VIM-203ENST00000469543 ZMYM6O95789 1325 aa22.21■■□□□ 1.15
VIM-203ENST00000469543 GOLGA6L19H0YKK7 550 aa22.21■■□□□ 1.15
VIM-203ENST00000469543 ZBTB43O43298 467 aa22.21■■□□□ 1.15
VIM-203ENST00000469543 DPCR1Q3MIW9 517 aa22.21■■□□□ 1.15
VIM-203ENST00000469543 ANO1Q5XXA6 986 aa22.2■■□□□ 1.14
VIM-203ENST00000469543 CACTINQ8WUQ7 758 aaKnown RBP22.2■■□□□ 1.14
VIM-203ENST00000469543 SPTLC3Q9NUV7 552 aa22.2■■□□□ 1.14
VIM-203ENST00000469543 DOT1LQ8TEK3 1739 aa22.2■■□□□ 1.14
VIM-203ENST00000469543 IGHMBP2P38935 993 aaKnown RBP22.2■■□□□ 1.14
VIM-203ENST00000469543 STX1AQ16623 288 aa22.2■■□□□ 1.14
VIM-203ENST00000469543 CCDC152Q4G0S7 254 aa22.2■■□□□ 1.14
VIM-203ENST00000469543 AXDND1Q5T1B0 1012 aaPredicted RBP22.2■■□□□ 1.14
VIM-203ENST00000469543 CLIC6Q96NY7 704 aa22.2■■□□□ 1.14
VIM-203ENST00000469543 POLR3EQ9NVU0 708 aa22.2■■□□□ 1.14
VIM-203ENST00000469543 ANKRD36CQ5JPF3 1778 aa22.19■■□□□ 1.14
VIM-203ENST00000469543 TDO2P48775 406 aa22.19■■□□□ 1.14
VIM-203ENST00000469543 ERFEQ4G0M1 354 aa22.19■■□□□ 1.14
VIM-203ENST00000469543 ATL3Q6DD88 541 aa22.19■■□□□ 1.14
VIM-203ENST00000469543 AOPEPQ8N6M6 819 aa22.19■■□□□ 1.14
VIM-203ENST00000469543 SLC26A6Q9BXS9 759 aa22.19■■□□□ 1.14
VIM-203ENST00000469543 TAF1P21675 1872 aa22.19■■□□□ 1.14
VIM-203ENST00000469543 COL16A1Q07092 1604 aaPredicted RBP22.19■■□□□ 1.14
VIM-203ENST00000469543 MROH7-TTC4A0A0A0MT08 1334 aa22.19■■□□□ 1.14
VIM-203ENST00000469543 BECN2A8MW95 431 aa22.19■■□□□ 1.14
VIM-203ENST00000469543 SPECC1Q5M775 1068 aa22.19■■□□□ 1.14
VIM-203ENST00000469543 GOLGA8AA7E2F4 631 aa22.18■■□□□ 1.14
VIM-203ENST00000469543 GOLGA6L6A8MZA4 724 aa22.18■■□□□ 1.14
VIM-203ENST00000469543 ZNF202O95125 648 aa22.18■■□□□ 1.14
VIM-203ENST00000469543 KLHL34Q8N239 644 aa22.18■■□□□ 1.14
VIM-203ENST00000469543 SLC12A7Q9Y666 1083 aa22.18■■□□□ 1.14
VIM-203ENST00000469543 ROBO1Q9Y6N7 1651 aa22.18■■□□□ 1.14
VIM-203ENST00000469543 ATRNO75882 1429 aa22.18■■□□□ 1.14
VIM-203ENST00000469543 CYP2D7A0A087X1C5 515 aa22.18■■□□□ 1.14
VIM-203ENST00000469543 MINDY4BA8MYZ0 360 aa22.18■■□□□ 1.14
VIM-203ENST00000469543 IARSP41252 1262 aaKnown RBP22.18■■□□□ 1.14
VIM-203ENST00000469543 TERF1P54274 439 aa22.18■■□□□ 1.14
VIM-203ENST00000469543 EVX2Q03828 476 aa22.18■■□□□ 1.14
VIM-203ENST00000469543 MFSD6Q6ZSS7 791 aa22.18■■□□□ 1.14
VIM-203ENST00000469543 COL14A1Q05707 1796 aaKnown RBP22.18■■□□□ 1.14
VIM-203ENST00000469543 FAM182BQ5T319 152 aa22.17■■□□□ 1.14
VIM-203ENST00000469543 BCL11BQ9C0K0 894 aaPredicted RBP22.17■■□□□ 1.14
VIM-203ENST00000469543 KCNJ14Q9UNX9 436 aa22.17■■□□□ 1.14
VIM-203ENST00000469543 CTAGE5O15320 804 aa22.17■■□□□ 1.14
VIM-203ENST00000469543 PFKFB1P16118 471 aa22.17■■□□□ 1.14
VIM-203ENST00000469543 GNL2Q13823 731 aaKnown RBP22.17■■□□□ 1.14
VIM-203ENST00000469543 AKNAD1Q5T1N1 836 aa22.17■■□□□ 1.14
VIM-203ENST00000469543 FILIP1Q7Z7B0 1213 aa22.17■■□□□ 1.14
VIM-203ENST00000469543 PIP4K2BP78356 416 aa22.16■■□□□ 1.14
VIM-203ENST00000469543 SLC51AQ86UW1 340 aa22.16■■□□□ 1.14
VIM-203ENST00000469543 KCNG4Q8TDN1 519 aa22.16■■□□□ 1.14
VIM-203ENST00000469543 BRAPQ7Z569 592 aa22.16■■□□□ 1.14
VIM-203ENST00000469543 KIAA1468Q9P260 1216 aa22.16■■□□□ 1.14
VIM-203ENST00000469543 CYP7A1P22680 504 aa22.15■■□□□ 1.14
VIM-203ENST00000469543 KLRK1P26718 216 aa22.15■■□□□ 1.14
VIM-203ENST00000469543 FAM98CQ17RN3 349 aaKnown RBP22.15■■□□□ 1.14
VIM-203ENST00000469543 WDR19Q8NEZ3 1342 aa22.15■■□□□ 1.14
VIM-203ENST00000469543 hCG_1642624A0A1W2PR95 340 aa22.15■■□□□ 1.14
VIM-203ENST00000469543 BTBD18B2RXH4 712 aa22.15■■□□□ 1.14
VIM-203ENST00000469543 NUP133Q8WUM0 1156 aa22.15■■□□□ 1.14
VIM-203ENST00000469543 TMEM87BQ96K49 555 aa22.15■■□□□ 1.14
VIM-203ENST00000469543 ANO10Q9NW15 660 aa22.15■■□□□ 1.14
VIM-203ENST00000469543 JAG2Q9Y219 1238 aa22.15■■□□□ 1.14
VIM-203ENST00000469543 A0A1W2PQ27 194 aa22.14■■□□□ 1.14
VIM-203ENST00000469543 A0A1W2PQ64 194 aa22.14■■□□□ 1.14
VIM-203ENST00000469543 A0A1W2PQD8 194 aa22.14■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms