RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 DPF3Q92784 378 aa6.91□□□□□ -1.3
PTPN4-209ENST00000469511 DEFB129Q9H1M3 183 aa6.91□□□□□ -1.3
PTPN4-209ENST00000469511 PHAXQ9H814 394 aaKnown RBP6.91□□□□□ -1.3
PTPN4-209ENST00000469511 A0A1B0GUL6 1792 aa6.9□□□□□ -1.3
PTPN4-209ENST00000469511 MGAMO43451 1857 aa6.9□□□□□ -1.3
PTPN4-209ENST00000469511 ZBTB48P10074 688 aaPredicted RBP6.9□□□□□ -1.3
PTPN4-209ENST00000469511 ATP2B4P23634 1241 aa6.9□□□□□ -1.3
PTPN4-209ENST00000469511 PSEN2P49810 448 aa6.9□□□□□ -1.3
PTPN4-209ENST00000469511 RIPK4P57078 832 aa6.9□□□□□ -1.3
PTPN4-209ENST00000469511 INHBEP58166 350 aa6.9□□□□□ -1.3
PTPN4-209ENST00000469511 SLC9C1Q4G0N8 1177 aa6.9□□□□□ -1.3
PTPN4-209ENST00000469511 Q7L0L9 218 aa6.9□□□□□ -1.3
PTPN4-209ENST00000469511 ZNF687Q8N1G0 1237 aa6.9□□□□□ -1.3
PTPN4-209ENST00000469511 BRI3BPQ8WY22 251 aa6.9□□□□□ -1.3
PTPN4-209ENST00000469511 ELP3Q9H9T3 547 aa6.9□□□□□ -1.3
PTPN4-209ENST00000469511 PNMA3Q9UL41 463 aa6.9□□□□□ -1.3
PTPN4-209ENST00000469511 MINPP1Q9UNW1 487 aa6.9□□□□□ -1.3
PTPN4-209ENST00000469511 XDHP47989 1333 aa6.9□□□□□ -1.3
PTPN4-209ENST00000469511 F8W031 263 aaPredicted RBP6.89□□□□□ -1.31
PTPN4-209ENST00000469511 GTF2IP78347 998 aa6.89□□□□□ -1.31
PTPN4-209ENST00000469511 TRIM28Q13263 835 aaKnown RBP6.89□□□□□ -1.31
PTPN4-209ENST00000469511 SH3D19Q5HYK7 790 aa6.89□□□□□ -1.31
PTPN4-209ENST00000469511 STRIP1Q5VSL9 837 aa6.89□□□□□ -1.31
PTPN4-209ENST00000469511 TTLL5Q6EMB2 1281 aa6.89□□□□□ -1.31
PTPN4-209ENST00000469511 UBE2Q1Q7Z7E8 422 aa6.89□□□□□ -1.31
PTPN4-209ENST00000469511 OGFOD1Q8N543 542 aa6.89□□□□□ -1.31
PTPN4-209ENST00000469511 ZBTB38Q8NAP3 1195 aaPredicted RBP6.89□□□□□ -1.31
PTPN4-209ENST00000469511 MARVELD3Q96A59 401 aa6.89□□□□□ -1.31
PTPN4-209ENST00000469511 OPTNQ96CV9 577 aa6.89□□□□□ -1.31
PTPN4-209ENST00000469511 PRMT6Q96LA8 375 aaPredicted RBP6.89□□□□□ -1.31
PTPN4-209ENST00000469511 MYD88Q99836 296 aa6.89□□□□□ -1.31
PTPN4-209ENST00000469511 TMEM134Q9H6X4 195 aa6.89□□□□□ -1.31
PTPN4-209ENST00000469511 RABGEF1Q9UJ41 708 aa6.89□□□□□ -1.31
PTPN4-209ENST00000469511 JAG2Q9Y219 1238 aa6.89□□□□□ -1.31
PTPN4-209ENST00000469511 LAS1LQ9Y4W2 734 aaKnown RBP6.89□□□□□ -1.31
PTPN4-209ENST00000469511 A0A0C4DFX4 3053 aa6.89□□□□□ -1.31
PTPN4-209ENST00000469511 MED23Q9ULK4 1368 aa6.88□□□□□ -1.31
PTPN4-209ENST00000469511 CHL1O00533 1208 aa6.88□□□□□ -1.31
PTPN4-209ENST00000469511 ZBTB7BO15156 539 aaPredicted RBP6.88□□□□□ -1.31
PTPN4-209ENST00000469511 PDE8AO60658 829 aa6.88□□□□□ -1.31
PTPN4-209ENST00000469511 CCT4P50991 539 aaKnown RBP6.88□□□□□ -1.31
PTPN4-209ENST00000469511 TRIM26Q12899 539 aaPredicted RBP6.88□□□□□ -1.31
PTPN4-209ENST00000469511 TAF1CQ15572 869 aaPredicted RBP6.88□□□□□ -1.31
PTPN4-209ENST00000469511 HDGFL1Q5TGJ6 251 aa6.88□□□□□ -1.31
PTPN4-209ENST00000469511 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.88□□□□□ -1.31
PTPN4-209ENST00000469511 APOBEC3FQ8IUX4 373 aaKnown RBP6.88□□□□□ -1.31
PTPN4-209ENST00000469511 ANKRD18AQ8IVF6 992 aa6.88□□□□□ -1.31
PTPN4-209ENST00000469511 COL25A1Q9BXS0 654 aaPredicted RBP6.88□□□□□ -1.31
PTPN4-209ENST00000469511 KIAA1468Q9P260 1216 aa6.88□□□□□ -1.31
PTPN4-209ENST00000469511 STAP2Q9UGK3 403 aa6.88□□□□□ -1.31
PTPN4-209ENST00000469511 CLSPNQ9HAW4 1339 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 IRS2Q9Y4H2 1338 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 CCL15-CCL14A0A0B4J2E2 113 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 PPP1R12BO60237 982 aaPredicted RBP6.87□□□□□ -1.31
PTPN4-209ENST00000469511 PCCAP05165 728 aaPredicted RBP6.87□□□□□ -1.31
PTPN4-209ENST00000469511 TMPOP42166 694 aaKnown RBP6.87□□□□□ -1.31
PTPN4-209ENST00000469511 RASA3Q14644 834 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 DLGAP5Q15398 846 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 CCL15Q16663 113 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 CFAP100Q494V2 611 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 CCDC152Q4G0S7 254 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 DMRTA1Q5VZB9 504 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 RIC3Q7Z5B4 369 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 NBPF11Q86T75 865 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 TTLL11Q8NHH1 800 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 COA1Q9GZY4 146 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 GREM2Q9H772 168 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 VEZTQ9HBM0 779 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 ARAP2Q8WZ64 1704 aa6.87□□□□□ -1.31
PTPN4-209ENST00000469511 ZNF804BA4D1E1 1349 aa6.86□□□□□ -1.31
PTPN4-209ENST00000469511 LAMA3Q16787 3333 aa6.86□□□□□ -1.31
PTPN4-209ENST00000469511 FAM205CA6NFA0 338 aa6.86□□□□□ -1.31
PTPN4-209ENST00000469511 ELL2O00472 640 aaPredicted RBP6.86□□□□□ -1.31
PTPN4-209ENST00000469511 NEFMP07197 916 aa6.86□□□□□ -1.31
PTPN4-209ENST00000469511 LACTBP83111 547 aaPredicted RBP6.86□□□□□ -1.31
PTPN4-209ENST00000469511 SKIV2LQ15477 1246 aaKnown RBP6.86□□□□□ -1.31
PTPN4-209ENST00000469511 DIXDC1Q155Q3 683 aa6.86□□□□□ -1.31
PTPN4-209ENST00000469511 DUSP27Q5VZP5 1158 aa6.86□□□□□ -1.31
PTPN4-209ENST00000469511 OTUD7BQ6GQQ9 843 aa6.86□□□□□ -1.31
PTPN4-209ENST00000469511 CCDC146Q8IYE0 955 aa6.86□□□□□ -1.31
PTPN4-209ENST00000469511 ANKRD13AQ8IZ07 590 aa6.86□□□□□ -1.31
PTPN4-209ENST00000469511 HELBQ8NG08 1087 aaPredicted RBP6.86□□□□□ -1.31
PTPN4-209ENST00000469511 FAM163AQ96GL9 167 aaPredicted RBP6.86□□□□□ -1.31
PTPN4-209ENST00000469511 TEPSINQ96N21 525 aa6.86□□□□□ -1.31
PTPN4-209ENST00000469511 ZFYVE28Q9HCC9 887 aa6.86□□□□□ -1.31
PTPN4-209ENST00000469511 CD209Q9NNX6 404 aa6.86□□□□□ -1.31
PTPN4-209ENST00000469511 BSDC1Q9NW68 430 aaPredicted RBP6.86□□□□□ -1.31
PTPN4-209ENST00000469511 DBF4Q9UBU7 674 aaPredicted RBP6.86□□□□□ -1.31
PTPN4-209ENST00000469511 VPS9D1Q9Y2B5 631 aa6.86□□□□□ -1.31
PTPN4-209ENST00000469511 MYO3BQ8WXR4 1341 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 MAPK8IP3Q9UPT6 1336 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 BTBD19C9JJ37 291 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 SMAPO00193 183 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 TAF5LO75529 589 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 IGKV5-2P06315 115 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 CCL5P13501 91 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 CD46P15529 392 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 IREB2P48200 963 aaKnown RBP6.85□□□□□ -1.31
PTPN4-209ENST00000469511 CTSWP56202 376 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 VGLL4Q14135 290 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms