RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 MARVELD3Q96A59 401 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 SCYL1Q96KG9 808 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 TSPYL1Q9H0U9 437 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 FCF1Q9Y324 198 aaKnown RBP5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 HCN4Q9Y3Q4 1203 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 MYO5BQ9ULV0 1848 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 RGS12O14924 1447 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 NAIPQ13075 1403 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 HFM1A2PYH4 1435 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 A6NJY4 79 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 GOLGA8CPA6NN73 597 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 NAT2P11245 290 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 EIF4BP23588 611 aaKnown RBP5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 CASQ1P31415 396 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 ITGAEP38570 1179 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 TERF1P54274 439 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 E2F5Q15329 346 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 TBC1D10BQ4KMP7 808 aaPredicted RBP5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 VPS37DQ86XT2 251 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 ABTB2Q8N961 1025 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 ZNF784Q8NCA9 323 aaPredicted RBP5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 NUDT16Q96DE0 195 aaKnown RBP5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 NUCKS1Q9H1E3 243 aaKnown RBP5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 CGNQ9P2M7 1197 aaKnown RBP5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 SPATA31A6Q5VVP1 1343 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 ARHGAP31Q2M1Z3 1444 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 BICDL2A1A5D9 508 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 ERICH4A6NGS2 130 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 ZPR1O75312 459 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 ADH1BP00325 375 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 TPM3P06753 285 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 NYAP1Q6ZVC0 841 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 DCAF11Q8TEB1 546 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 CFAP53Q96M91 514 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 RETREG1Q9H6L5 497 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 ISY1Q9ULR0 285 aaKnown RBP5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 UNC13BO14795 1591 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 CCDC85CA6NKD9 419 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 WASLO00401 505 aaPredicted RBP5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 SNPHO15079 494 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 U2AF1L5P0DN76 240 aaPredicted RBP5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 NEFHP12036 1026 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 GJA8P48165 433 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 RBM5P52756 815 aaKnown RBP eCLIP5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 EIF5P55010 431 aaKnown RBP5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 U2AF1Q01081 240 aaKnown RBP eCLIP5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 FILIP1Q7Z7B0 1213 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 TRMT44Q8IYL2 757 aaKnown RBP5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 ZNF516Q92618 1163 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 SLC4A9Q96Q91 983 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 PAGR1Q9BTK6 254 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 ZNF408Q9H9D4 720 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 IFT57Q9NWB7 429 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 SPG7Q9UQ90 795 aa5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 DIS3Q9Y2L1 958 aaKnown RBP5.74□□□□□ -1.49
CCDC88A-209ENST00000456975 DIP2AQ14689 1571 aa5.73□□□□□ -1.49
CCDC88A-209ENST00000456975 LRP5O75197 1615 aa5.73□□□□□ -1.49
CCDC88A-209ENST00000456975 LTKP29376 864 aa5.73□□□□□ -1.49
CCDC88A-209ENST00000456975 C11orf91Q3C1V1 193 aa5.73□□□□□ -1.49
CCDC88A-209ENST00000456975 L1TD1Q5T7N2 865 aaKnown RBP5.73□□□□□ -1.49
CCDC88A-209ENST00000456975 CCDC70Q6NSX1 233 aa5.73□□□□□ -1.49
CCDC88A-209ENST00000456975 PDILTQ8N807 584 aa5.73□□□□□ -1.49
CCDC88A-209ENST00000456975 WNT2BQ93097 391 aa5.73□□□□□ -1.49
CCDC88A-209ENST00000456975 GPRASP2Q96D09 838 aa5.73□□□□□ -1.49
CCDC88A-209ENST00000456975 SLC6A16Q9GZN6 736 aa5.73□□□□□ -1.49
CCDC88A-209ENST00000456975 KANSL2Q9H9L4 492 aa5.73□□□□□ -1.49
CCDC88A-209ENST00000456975 EID1Q9Y6B2 187 aa5.73□□□□□ -1.49
CCDC88A-209ENST00000456975 EFCAB6Q5THR3 1501 aa5.73□□□□□ -1.49
CCDC88A-209ENST00000456975 GCC2Q8IWJ2 1684 aa5.73□□□□□ -1.49
CCDC88A-209ENST00000456975 TIMM44O43615 452 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 PBX2P40425 430 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 SMTNP53814 917 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 PSMA6P60900 246 aaKnown RBP5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 PTPN12Q05209 780 aaKnown RBP5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 BIRC2Q13490 618 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 ANKRD13BQ86YJ7 626 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 ALDH16A1Q8IZ83 802 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 MRFAP1L1Q96HT8 127 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 IPO9Q96P70 1041 aaKnown RBP5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 RPS6KC1Q96S38 1066 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 ZNF232Q9UNY5 417 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 NHSL1Q5SYE7 1610 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 FAM205CA6NFA0 338 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 HRO43593 1189 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 HMMRO75330 724 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 S1PR4O95977 384 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 KCNA2P16389 499 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 FSHRP23945 695 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 HSD3B2P26439 372 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 ETFBP38117 255 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 JMYQ8N9B5 988 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 MNS1Q8NEH6 495 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 FBF1Q8TES7 1133 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 IFT43Q96FT9 208 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 MYO19Q96H55 970 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 ZNF396Q96N95 335 aaPredicted RBP5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 MUC3BQ9H195 1237 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 MED4Q9NPJ6 270 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 FOXD3Q9UJU5 478 aaPredicted RBP5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms